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Fan G, Liu H, Yang S, Luo L, Pang M, Liu B, Zhang L, Han L, Rong L, Liao X. Early Prognostication of Critical Patients With Spinal Cord Injury: A Machine Learning Study With 1485 Cases. Spine (Phila Pa 1976) 2024; 49:754-762. [PMID: 37921018 DOI: 10.1097/brs.0000000000004861] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Accepted: 10/14/2023] [Indexed: 11/04/2023]
Abstract
STUDY DESIGN A retrospective case-series. OBJECTIVE The study aims to use machine learning to predict the discharge destination of spinal cord injury (SCI) patients in the intensive care unit. SUMMARY OF BACKGROUND DATA Prognostication following SCI is vital, especially for critical patients who need intensive care. PATIENTS AND METHODS Clinical data of patients diagnosed with SCI were extracted from a publicly available intensive care unit database. The first recorded data of the included patients were used to develop a total of 98 machine learning classifiers, seeking to predict discharge destination (eg, death, further medical care, home, etc.). The microaverage area under the curve (AUC) was the main indicator to assess discrimination. The best average-AUC classifier and the best death-sensitivity classifier were integrated into an ensemble classifier. The discrimination of the ensemble classifier was compared with top death-sensitivity classifiers and top average-AUC classifiers. In addition, prediction consistency and clinical utility were also assessed. RESULTS A total of 1485 SCI patients were included. The ensemble classifier had a microaverage AUC of 0.851, which was only slightly inferior to the best average-AUC classifier ( P =0.10). The best average-AUC classifier death sensitivity was much lower than that of the ensemble classifier. The ensemble classifier had a death sensitivity of 0.452, which was inferior to the top 8 death-sensitivity classifiers, whose microaverage AUC were inferior to the ensemble classifier ( P <0.05). In addition, the ensemble classifier demonstrated a comparable Brier score and superior net benefit in the DCA when compared with the performance of the origin classifiers. CONCLUSIONS The ensemble classifier shows an overall superior performance in predicting discharge destination, considering discrimination ability, prediction consistency, and clinical utility. This classifier system may aid in the clinical management of critical SCI patients in the early phase following injury. LEVEL OF EVIDENCE Level 3.
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Affiliation(s)
- Guoxin Fan
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen, China
- Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen, China
- Department of Spine Surgery, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
| | - Huaqing Liu
- Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Pearl River Delta, Guangzhou, China
| | - Sheng Yang
- Department of Orthopedic, Spinal Pain Research Institute, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Libo Luo
- Department of Medical Oncology, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, China
| | - Mao Pang
- Department of Spine Surgery, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
| | - Bin Liu
- Department of Spine Surgery, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
| | - Liangming Zhang
- Department of Spine Surgery, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
| | - Lanqing Han
- Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Pearl River Delta, Guangzhou, China
| | - Limin Rong
- Department of Spine Surgery, The Third Affiliated Hospital of Sun Yat-sen University, Guangzhou, China
| | - Xiang Liao
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen, China
- Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, National-Regional Key Technology Engineering Laboratory for Medical Ultrasound, School of Biomedical Engineering, Shenzhen University Medical School, Shenzhen, China
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Fan G, Li Y, Wang D, Zhang J, Du X, Liu H, Liao X. Automatic segmentation of dura for quantitative analysis of lumbar stenosis: A deep learning study with 518 CT myelograms. J Appl Clin Med Phys 2024:e14378. [PMID: 38729652 DOI: 10.1002/acm2.14378] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 04/01/2024] [Accepted: 04/18/2024] [Indexed: 05/12/2024] Open
Abstract
BACKGROUND The diagnosis of lumbar spinal stenosis (LSS) can be challenging because radicular pain is not often present in the culprit-level localization. Accurate segmentation and quantitative analysis of the lumbar dura on radiographic images are key to the accurate differential diagnosis of LSS. The aim of this study is to develop an automatic dura-contouring tool for radiographic quantification on computed tomography myelogram (CTM) for patients with LSS. METHODS A total of 518 CTM cases with or without lumbar stenosis were included in this study. A deep learning (DL) segmentation algorithm 3-dimensional (3D) U-Net was deployed. A total of 210 labeled cases were used to develop the dura-contouring tool, with the ratio of the training, independent testing, and external validation datasets being 150:30:30. The Dice score (DCS) was the primary measure to evaluate the segmentation performance of the 3D U-Net, which was subsequently developed as the dura-contouring tool to segment another unlabeled 308 CTM cases with LSS. Automatic masks of 446 slices on the stenotic levels were then meticulously reviewed and revised by human experts, and the cross-sectional area (CSA) of the dura was compared. RESULTS The mean DCS of the 3D U-Net were 0.905 ± 0.080, 0.933 ± 0.018, and 0.928 ± 0.034 in the five-fold cross-validation, the independent testing, and the external validation datasets, respectively. The segmentation performance of the dura-contouring tool was also comparable to that of the second observer (the human expert). With the dura-contouring tool, only 59.0% (263/446) of the automatic masks of the stenotic slices needed to be revised. In the revised cases, there were no significant differences in the dura CSA between automatic masks and corresponding revised masks (p = 0.652). Additionally, a strong correlation of dura CSA was found between the automatic masks and corresponding revised masks (r = 0.805). CONCLUSIONS A dura-contouring tool was developed that could automatically segment the dural sac on CTM, and it demonstrated high accuracy and generalization ability. Additionally, the dura-contouring tool has the potential to be applied in patients with LSS because it facilitates the quantification of the dural CSA on stenotic slices.
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Affiliation(s)
- Guoxin Fan
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen, China
- Department of Spine Surgery, Third Affiliated Hospital, Sun Yat-Sen University, Guangzhou, China
| | - Yufeng Li
- Department of Sports Medicine, Eighth Affiliated Hospital, Sun Yat-Sen University, Shenzhen, China
| | - Dongdong Wang
- Department of Orthopaedics, Putuo People's Hospital, School of Medicine, Tongji University, Shanghai, China
| | - Jianjin Zhang
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen, China
| | - Xiaokang Du
- Department of Orthopedics, The People's Hospital of Wenshang County, Wenshang, Shandong, China
| | - Huaqing Liu
- Artificial Intelligence Innovation Center, Research Institute of Tsinghua PearlRiverDelta, Guangzhou, China
| | - Xiang Liao
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen, China
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Zhao J, Sun L, Sun Z, Zhou X, Si H, Zhang D. MSEF-Net: Multi-scale edge fusion network for lumbosacral plexus segmentation with MR image. Artif Intell Med 2024; 148:102771. [PMID: 38325928 DOI: 10.1016/j.artmed.2024.102771] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2022] [Revised: 12/08/2023] [Accepted: 01/14/2024] [Indexed: 02/09/2024]
Abstract
Nerve damage of spine areas is a common cause of disability and paralysis. The lumbosacral plexus segmentation from magnetic resonance imaging (MRI) scans plays an important role in many computer-aided diagnoses and surgery of spinal nerve lesions. Due to the complex structure and low contrast of the lumbosacral plexus, it is difficult to delineate the regions of edges accurately. To address this issue, we propose a Multi-Scale Edge Fusion Network (MSEF-Net) to fully enhance the edge feature in the encoder and adaptively fuse multi-scale features in the decoder. Specifically, to highlight the edge structure feature, we propose an edge feature fusion module (EFFM) by combining the Sobel operator edge detection and the edge-guided attention module (EAM), respectively. To adaptively fuse the multi-scale feature map in the decoder, we introduce an adaptive multi-scale fusion module (AMSF). Our proposed MSEF-Net method was evaluated on the collected spinal MRI dataset with 89 patients (a total of 2848 MR images). Experimental results demonstrate that our MSEF-Net is effective for lumbosacral plexus segmentation with MR images, when compared with several state-of-the-art segmentation methods.
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Affiliation(s)
- Junyong Zhao
- College of Computer Science and Technology, Nanjing University of Aeronautics and Astronautics, the Key Laboratory of Brain-Machine Intelligence Technology, Ministry of Education, Nanjing 211106, China
| | - Liang Sun
- College of Computer Science and Technology, Nanjing University of Aeronautics and Astronautics, the Key Laboratory of Brain-Machine Intelligence Technology, Ministry of Education, Nanjing 211106, China; Nanjing University of Aeronautics and Astronautics Shenzhen Research Institute, Shenzhen 518063, China.
| | - Zhi Sun
- Department of Medical Imaging, Shandong Provincial Hospital, Jinan 250021, China
| | - Xin Zhou
- Department of Orthopedics, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan 250012, China
| | - Haipeng Si
- Department of Orthopedics, Qilu Hospital, Cheeloo College of Medicine, Shandong University, Jinan 250012, China.
| | - Daoqiang Zhang
- College of Computer Science and Technology, Nanjing University of Aeronautics and Astronautics, the Key Laboratory of Brain-Machine Intelligence Technology, Ministry of Education, Nanjing 211106, China; Nanjing University of Aeronautics and Astronautics Shenzhen Research Institute, Shenzhen 518063, China.
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Yu P, Li Y, Zhao Q, Chen X, Wu L, Jiang S, Rao L, Rao Y. Three-dimensional analysis of puncture needle path through safety triangle approach PLD and design of puncture positioning guide plate. JOURNAL OF X-RAY SCIENCE AND TECHNOLOGY 2024; 32:825-837. [PMID: 38517837 DOI: 10.3233/xst-230267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/24/2024]
Abstract
OBJECTIVE In this study, the three-dimensional relationship between the optimal puncture needle path and the lumbar spinous process was discussed using digital technology. Additionally, the positioning guide plate was designed and 3D printed in order to simulate the surgical puncture of specimens. This plate served as an important reference for the preoperative simulation and clinical application of percutaneous laser decompression (PLD). METHOD The CT data were imported into the Mimics program, the 3D model was rebuilt, the ideal puncture line N and the associated central axis M were developed, and the required data were measured. All of these steps were completed. A total of five adult specimens were chosen for CT scanning; the data were imported into the Mimics program; positioning guide plates were generated and 3D printed; a simulated surgical puncture of the specimens was carried out; an X-ray inspection was carried out; and an analysis of the puncture accuracy was carried out. RESULTS (1) The angle between line N and line M was 42°~55°, and the angles between the line M and 3D plane were 1°~2°, 5°~12°, and 78°~84°, respectively; (2) As the level of the lumbar intervertebral disc decreases, the distance from point to line and point to surface changes regularly; (3) The positioning guide was designed with the end of the lumbar spinous process and the posterior superior iliac spine on both sides as supporting points. (4) Five specimens were punctured 40 times by using the guide to simulate surgical puncture, and the success rate was 97.5%. CONCLUSION By analyzing the three-dimensional relationship between the optimal puncture needle path and the lumbar spinous process, the guide plate was designed to simulate surgical puncture, and the individualized safety positioning of percutaneous puncture was obtained.
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Affiliation(s)
- Penghui Yu
- School of Basic Medical Science, Hunan University of Medicine, Huaihua, Hunan, China
- Huaihua Key Laboratory of Digital Anatomy and 3D Printing for Clinical Translational Research, Huaihua, Hunan, China
| | - Yanbing Li
- School of Basic Medical Science, Southern Medical University, Guangzhou, Guangdong, China
| | - Qidong Zhao
- Imaging Department, The First Affiliated Hospital of Hunan University of Medicine, Huaihua, Hunan, China
| | - Xia Chen
- School of Basic Medical Science, Hunan University of Medicine, Huaihua, Hunan, China
| | - Liqin Wu
- International Education School, Hunan University of Medicine, Huaihua, Hunan, China
| | - Shuai Jiang
- School of Basic Medical Science, Hunan University of Medicine, Huaihua, Hunan, China
- Huaihua Key Laboratory of Digital Anatomy and 3D Printing for Clinical Translational Research, Huaihua, Hunan, China
| | - Libing Rao
- School of Basic Medical Science, Hunan University of Medicine, Huaihua, Hunan, China
- Huaihua Key Laboratory of Digital Anatomy and 3D Printing for Clinical Translational Research, Huaihua, Hunan, China
| | - Yihua Rao
- Huaihua Key Laboratory of Digital Anatomy and 3D Printing for Clinical Translational Research, Huaihua, Hunan, China
- Neurosurgery Department, Hunan University of Medicine General Hospital, Huaihua, Hunan, China
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Tabarestani TQ, Salven DS, Sykes DAW, Bardeesi AM, Bartlett AM, Wang TY, Paturu MR, Dibble CF, Shaffrey CI, Ray WZ, Chi JH, Wiggins WF, Abd-El-Barr MM. Using Novel Segmentation Technology to Define Safe Corridors for Minimally Invasive Posterior Lumbar Interbody Fusion. Oper Neurosurg (Hagerstown) 2023:01787389-990000000-01010. [PMID: 38149852 DOI: 10.1227/ons.0000000000001046] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Accepted: 11/15/2023] [Indexed: 12/28/2023] Open
Abstract
BACKGROUND AND OBJECTIVES There has been a rise in minimally invasive methods to access the intervertebral disk space posteriorly given their decreased tissue destruction, lower blood loss, and earlier return to work. Two such options include the percutaneous lumbar interbody fusion through the Kambin triangle and the endoscopic transfacet approach. However, without accurate preoperative visualization, these approaches carry risks of damaging surrounding structures, especially the nerve roots. Using novel segmentation technology, our goal was to analyze the anatomic borders and relative sizes of the safe triangle, trans-Kambin, and the transfacet corridors to assist surgeons in planning a safe approach and determining cannula diameters. METHODS The areas of the safe triangle, Kambin, and transfacet corridors were measured using commercially available software (BrainLab, Munich, Germany). For each approach, the exiting nerve root, traversing nerve roots, theca, disk, and vertebrae were manually segmented on 3-dimensional T2-SPACE magnetic resonance imaging using a region-growing algorithm. The triangles' borders were delineated ensuring no overlap between the area and the nerves. RESULTS A total of 11 patients (65.4 ± 12.5 years, 33.3% female) were retrospectively reviewed. The Kambin, safe, and transfacet corridors were measured bilaterally at the operative level. The mean area (124.1 ± 19.7 mm2 vs 83.0 ± 11.7 mm2 vs 49.5 ± 11.4 mm2) and maximum permissible cannula diameter (9.9 ± 0.7 mm vs 6.8 ± 0.5 mm vs 6.05 ± 0.7 mm) for the transfacet triangles were significantly larger than Kambin and the traditional safe triangles, respectively (P < .001). CONCLUSION We identified, in 3-dimensional, the borders for the transfacet corridor: the traversing nerve root extending inferiorly until the caudal pedicle, the theca medially, and the exiting nerve root superiorly. These results illustrate the utility of preoperatively segmenting anatomic landmarks, specifically the nerve roots, to help guide decision-making when selecting the optimal operative approach.
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Affiliation(s)
- Troy Q Tabarestani
- Department of Neurosurgery, Duke University School of Medicine, Durham, North Carolina, USA
| | - David S Salven
- Department of Neurosurgery, Duke University School of Medicine, Durham, North Carolina, USA
| | - David A W Sykes
- Department of Neurosurgery, Duke University School of Medicine, Durham, North Carolina, USA
| | - Anas M Bardeesi
- Department of Neurosurgery, Duke University Hospital, Durham, North Carolina, USA
| | - Alyssa M Bartlett
- Department of Neurosurgery, Duke University School of Medicine, Durham, North Carolina, USA
| | - Timothy Y Wang
- Department of Neurosurgery, Duke University Hospital, Durham, North Carolina, USA
| | - Mounica R Paturu
- Department of Neurosurgery, Duke University Hospital, Durham, North Carolina, USA
| | - Christopher F Dibble
- Department of Neurosurgery, Duke University Hospital, Durham, North Carolina, USA
| | | | - Wilson Z Ray
- Department of Neurosurgery, Washington University, St. Louis, Missouri, USA
| | - John H Chi
- Department of Neurosurgery, Brigham and Women's Hospital, Boston, Massachusetts, USA
| | - Walter F Wiggins
- Department of Radiology, Duke University Hospital, Durham, North Carolina, USA
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Fan G, Wang D, Li Y, Xu Z, Wang H, Liu H, Liao X. Machine Learning Predicts Decompression Levels for Lumbar Spinal Stenosis Using Canal Radiomic Features from Computed Tomography Myelography. Diagnostics (Basel) 2023; 14:53. [PMID: 38201362 PMCID: PMC10795799 DOI: 10.3390/diagnostics14010053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 11/17/2023] [Accepted: 11/29/2023] [Indexed: 01/12/2024] Open
Abstract
BACKGROUND The accurate preoperative identification of decompression levels is crucial for the success of surgery in patients with multi-level lumbar spinal stenosis (LSS). The objective of this study was to develop machine learning (ML) classifiers that can predict decompression levels using computed tomography myelography (CTM) data from LSS patients. METHODS A total of 1095 lumbar levels from 219 patients were included in this study. The bony spinal canal in CTM images was manually delineated, and radiomic features were extracted. The extracted data were randomly divided into training and testing datasets (8:2). Six feature selection methods combined with 12 ML algorithms were employed, resulting in a total of 72 ML classifiers. The main evaluation indicator for all classifiers was the area under the curve of the receiver operating characteristic (ROC-AUC), with the precision-recall AUC (PR-AUC) serving as the secondary indicator. The prediction outcome of ML classifiers was decompression level or not. RESULTS The embedding linear support vector (embeddingLSVC) was the optimal feature selection method. The feature importance analysis revealed the top 5 important features of the 15 radiomic predictors, which included 2 texture features, 2 first-order intensity features, and 1 shape feature. Except for shape features, these features might be eye-discernible but hardly quantified. The top two ML classifiers were embeddingLSVC combined with support vector machine (EmbeddingLSVC_SVM) and embeddingLSVC combined with gradient boosting (EmbeddingLSVC_GradientBoost). These classifiers achieved ROC-AUCs over 0.90 and PR-AUCs over 0.80 in independent testing among the 72 classifiers. Further comparisons indicated that EmbeddingLSVC_SVM appeared to be the optimal classifier, demonstrating superior discrimination ability, slight advantages in the Brier scores on the calibration curve, and Net benefits on the Decision Curve Analysis. CONCLUSIONS ML successfully extracted valuable and interpretable radiomic features from the spinal canal using CTM images, and accurately predicted decompression levels for LSS patients. The EmbeddingLSVC_SVM classifier has the potential to assist surgical decision making in clinical practice, as it showed high discrimination, advantageous calibration, and competitive utility in selecting decompression levels in LSS patients using canal radiomic features from CTM.
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Affiliation(s)
- Guoxin Fan
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen 518056, China; (G.F.); (Z.X.); (H.W.)
- Department of Spine Surgery, Third Affiliated Hospital, Sun Yat-sen University, Guangzhou 510630, China
| | - Dongdong Wang
- Department of Orthopaedics, Putuo People’s Hospital, Tongji University, Shanghai 200060, China;
| | - Yufeng Li
- Department of Sports Medicine, Eighth Affiliated Hospital, Sun Yat-sen University, Shenzhen 518033, China;
| | - Zhipeng Xu
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen 518056, China; (G.F.); (Z.X.); (H.W.)
| | - Hong Wang
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen 518056, China; (G.F.); (Z.X.); (H.W.)
| | - Huaqing Liu
- Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Guangzhou 510700, China
| | - Xiang Liao
- Department of Pain Medicine, Huazhong University of Science and Technology Union Shenzhen Hospital, Shenzhen 518056, China; (G.F.); (Z.X.); (H.W.)
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Dannebrock FA, Zardo EDA, Ziegler MS, Vialle E, Soder RB, Schwanke CHA. Lumbar safety triangle: comparative study of coronal and coronal oblique planes in 3.0-T magnetic resonance imaging. Radiol Bras 2023; 56:327-335. [PMID: 38504808 PMCID: PMC10948153 DOI: 10.1590/0100-3984.2023.0022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 07/31/2023] [Accepted: 09/26/2023] [Indexed: 03/21/2024] Open
Abstract
Objective To compare the measurements of the lumbar safety triangle (Kambin's triangle) and the invasion of the dorsal root ganglion in the triangle in coronal and coronal oblique planes. Materials and Methods A cross-sectional study, in which 210 3.0-T magnetic resonance images of L2-L5 were analyzed in coronal and coronal oblique planes. Exams with lumbar spine anomalies were excluded. Demographic (sex and age) and radiological variables were recorded by a single evaluator. Results Most sample was female (57.1%), mean age 45.5 ± 13.3 (18-98 years). The measurements average, as well as the areas, gradually increased from L2 to L5. The dorsal root ganglion invaded the triangle in all images. The safety triangle average area was smaller in the coronal oblique plane than in the coronal plane. Of the seven dimensions of safety triangle obtained for each level of the lumbar spine, six were significantly smaller in the coronal oblique plane than in the coronal plane. The only dimension that showed no difference was the smallest ganglion dimension. Conclusion The dimensions and areas investigated were smaller in coronal oblique plane, especially the area (difference > 1 mm). The analysis of the triangular zone in this plane becomes important in the preoperative assessment of minimally invasive procedures.
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Affiliation(s)
| | - Erasmo de Abreu Zardo
- Pontifícia Universidade Católica do Rio Grande do Sul
(PUCRS), Porto Alegre, RS, Brazil
- Instituto Gaúcho de Cirurgia da Coluna Vertebral, Porto
Alegre, RS, Brazil
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Zhong NN, Wang HQ, Huang XY, Li ZZ, Cao LM, Huo FY, Liu B, Bu LL. Enhancing head and neck tumor management with artificial intelligence: Integration and perspectives. Semin Cancer Biol 2023; 95:52-74. [PMID: 37473825 DOI: 10.1016/j.semcancer.2023.07.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2023] [Revised: 07/11/2023] [Accepted: 07/15/2023] [Indexed: 07/22/2023]
Abstract
Head and neck tumors (HNTs) constitute a multifaceted ensemble of pathologies that primarily involve regions such as the oral cavity, pharynx, and nasal cavity. The intricate anatomical structure of these regions poses considerable challenges to efficacious treatment strategies. Despite the availability of myriad treatment modalities, the overall therapeutic efficacy for HNTs continues to remain subdued. In recent years, the deployment of artificial intelligence (AI) in healthcare practices has garnered noteworthy attention. AI modalities, inclusive of machine learning (ML), neural networks (NNs), and deep learning (DL), when amalgamated into the holistic management of HNTs, promise to augment the precision, safety, and efficacy of treatment regimens. The integration of AI within HNT management is intricately intertwined with domains such as medical imaging, bioinformatics, and medical robotics. This article intends to scrutinize the cutting-edge advancements and prospective applications of AI in the realm of HNTs, elucidating AI's indispensable role in prevention, diagnosis, treatment, prognostication, research, and inter-sectoral integration. The overarching objective is to stimulate scholarly discourse and invigorate insights among medical practitioners and researchers to propel further exploration, thereby facilitating superior therapeutic alternatives for patients.
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Affiliation(s)
- Nian-Nian Zhong
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Han-Qi Wang
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Xin-Yue Huang
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Zi-Zhan Li
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Lei-Ming Cao
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Fang-Yi Huo
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China
| | - Bing Liu
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China; Department of Oral & Maxillofacial - Head Neck Oncology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China.
| | - Lin-Lin Bu
- State Key Laboratory of Oral & Maxillofacial Reconstruction and Regeneration, Key Laboratory of Oral Biomedicine Ministry of Education, Hubei Key Laboratory of Stomatology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China; Department of Oral & Maxillofacial - Head Neck Oncology, School & Hospital of Stomatology, Wuhan University, Wuhan 430079, China.
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Lucchesi G, Bonnel F, Mainard N, Orlando N, Sacco R, Dimeglio A, Boutry N, Canavese F. Interrelations Between the Too-Long Anterior Calcaneal Process, Hind and Mid-tarsal Bone Volumes, Angles and Osteochondral Lesion of the Dome of the Talus: Analysis by Software Slicer of 69 CT Scan of Feet. Indian J Orthop 2022; 56:2228-2236. [PMID: 36507201 PMCID: PMC9705673 DOI: 10.1007/s43465-022-00768-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 10/20/2022] [Indexed: 11/17/2022]
Abstract
Introduction Although the association between Too-Long Anterior Calcaneal Process (TLACP) and osteochondral lesion of the dome of the talus (OCL) has been hypothesized, no study has investigated the interrelations between TLACP, hind and mid-tarsal volumes and angles and the development of OCL. The main goals of this work are: (1) to measure the volume of the calcaneum, talus, navicular and cuboid in subjects with and without TLACP; (2) to evaluate the angular relationships between talus, calcaneum and navicular in subjects with and without TLACP; (3) to assess whether TLACP has an effect on the volume of OCL. Methods This is a retrospective study of 69 CT scans of 54 consecutive children aged 11-15 years who had undergone a CT scan due to symptomatology suggestive of TLACP. The 3D Slicer software allowed to calculate the volume of the talus, calcaneum, navicular, cuboid, TLACP and OCL (in cm3). The PACS system was used to perform the angular measurements (in degrees) between talus, calcaneum and navicular in the frontal, axial and sagittal plane. Results Amid the 69 CT scans, 49 were found to have pathologies related to TLACP (71%, TLACP Group) and 20/69 were normal (29%, Control Group). The mean hind and mid-tarsal bone volumes of the TLACP group were comparable to those of the control group. There were 40 (81.6%) OCLs detected exclusively in pathological feet (TLACP group); 32 lesions were medial (80%), and 8 lesions were lateral (20%). According to Ferkel and Sgaglione CT Staging System, there were 22 (55%) stage 1 lesions, 5 (12.5%) stage 2A, 3 (7.5%) stage 2B and 10 (25%) stage three lesions. Only the angle between the talus and calcaneum in the frontal plane was significantly lower in pathological feet with respect to the control group (p < 0.001). In pathological feet, the talus was supinated, and the calcaneus pronated. Conclusions TLACP tend to stiffen the foot, modifying its biomechanics and leading to supination of the talus and pronation of the calcaneum. This induces an overpressure at the medial side of the talus where we observed a greater frequency of medial OCL with larger volume than lateral OCL. Level of Evidence III.
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Affiliation(s)
- Giovanni Lucchesi
- Ortopediatria Center for Education, Research and Patient Care in Paediatric Orthopedics, Bologna, Italy
| | - François Bonnel
- Faculty of Medicine, University of Montpellier, 2 Rue de l’École de Médecine, 34090 Montpellier, France
| | - Nicolas Mainard
- Department of Pediatric Orthopedic Surgery, Jeanne de Flandre Hospital, Lille University Centre, 59000 Lille, France
| | | | | | - Alain Dimeglio
- Faculty of Medicine, University of Montpellier, Montpellier, France
| | - Nathalie Boutry
- Department of Pediatric Imaging, Hôpital Jeanne de Flandre, CHU Lille, Avenue Eugène Avinée, F-59000 Lille, France
| | - Federico Canavese
- Department of Pediatric Orthopedic Surgery, Jeanne de Flandre Hospital, Lille University Centre, 59000 Lille, France
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10
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Su Z, Liu Z, Wang M, Li S, Lin L, Yuan Z, Pang S, Feng Q, Chen T, Lu H. Three-dimensional reconstruction of Kambin's triangle based on automated magnetic resonance image segmentation. J Orthop Res 2022; 40:2914-2923. [PMID: 35233815 DOI: 10.1002/jor.25303] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/14/2021] [Revised: 02/12/2022] [Accepted: 02/21/2022] [Indexed: 02/04/2023]
Abstract
The three-dimensional (3D) anatomy of Kambin's triangle is crucial for surgical planning in minimally invasive spine surgery via the transforaminal approach. Few pieces of research have, however, used image segmentation to explore the 3D reconstruction of Kambin's triangle. This study aimed to develop a new method of 3D reconstruction of Kambin's triangle based on automated magnetic resonance image (MRI) segmentation of the lumbar spinal structures. An experienced (>5 years) "ground truth" spinal pain physician meticulously segmented and labeled spinal structures (e.g., bones, dura mater, discs, and nerve roots) on MRI. Subsequently, a 3D U-Net algorithm was developed for automatically segmenting lumbar spinal structures for the 3D reconstruction of Kambin's triangle. The Dice similarity coefficient (DSC), precision, recall, and the area of Kambin's triangle were used to assess anatomical performance. The automatic segmentation of all spinal structures at the L4/L5 levels and L5/S1 levels resulted in good performance: DSC = 0.878/0.883, precision = 0.889/0.890, recall = 0.873/0.882. Furthermore, the area measurements of Kambin's triangle revealed no significant difference between ground truth and automatic segmentation (p = 0.333 at the L4/L5 level, p = 0.302 at the L5/S1 level). The 3D U-Net model used in this study performed well in terms of simultaneous segmentation of multi-class spinal structures (including bones, dura mater, discs, and nerve roots) on MRI, allowing for accurate 3D reconstruction of Kambin's triangle.
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Affiliation(s)
- Zhihai Su
- Department of Spinal Surgery, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
| | - Zheng Liu
- Department of Spinal Surgery, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
| | - Min Wang
- Department of Spinal Surgery, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
| | - Shaolin Li
- Department of Radiology, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
| | - Liyan Lin
- Guangdong Provincial Key Laboratory of Medical Image Processing, School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
| | - Zhen Yuan
- Faculty of Health Sciences, University of Macau, Taipa, Macau SAR, China
| | - Shumao Pang
- Guangdong Provincial Key Laboratory of Medical Image Processing, School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
| | - Qianjin Feng
- Guangdong Provincial Key Laboratory of Medical Image Processing, School of Biomedical Engineering, Southern Medical University, Guangzhou, Guangdong, China
| | - Tao Chen
- Department of Spinal Surgery, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
| | - Hai Lu
- Department of Spinal Surgery, Fifth Affiliated Hospital of Sun Yat-sen University, Zhuhai, Guangdong, China
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Virtual CT Myelography: A Patch-Based Machine Learning Model to Improve Intraspinal Soft Tissue Visualization on Unenhanced Dual-Energy Lumbar Spine CT. INFORMATION 2022. [DOI: 10.3390/info13090412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022] Open
Abstract
Background: Distinguishing between the spinal cord and cerebrospinal fluid (CSF) non-invasively on CT is challenging due to their similar mass densities. We hypothesize that patch-based machine learning applied to dual-energy CT can accurately distinguish CSF from neural or other tissues based on the center voxel and neighboring voxels. Methods: 88 regions of interest (ROIs) from 12 patients’ dual-energy (100 and 140 kVp) lumbar spine CT exams were manually labeled by a neuroradiologist as one of 4 major tissue types (water, fat, bone, and nonspecific soft tissue). Four-class classifier convolutional neural networks were trained, validated, and tested on thousands of nonoverlapping patches extracted from 82 ROIs among 11 CT exams, with each patch representing pixel values (at low and high energies) of small, rectangular, 3D CT volumes. Different patch sizes were evaluated, ranging from 3 × 3 × 3 × 2 to 7 × 7 × 7 × 2. A final ensemble model incorporating all patch sizes was tested on patches extracted from six ROIs in a holdout patient. Results: Individual models showed overall test accuracies ranging from 99.8% for 3 × 3 × 3 × 2 patches (N = 19,423) to 98.1% for 7 × 7 × 7 × 2 patches (N = 1298). The final ensemble model showed 99.4% test classification accuracy, with sensitivities and specificities of 90% and 99.6%, respectively, for the water class and 98.6% and 100% for the soft tissue class. Conclusions: Convolutional neural networks utilizing local low-level features on dual-energy spine CT can yield accurate tissue classification and enhance the visualization of intraspinal neural tissue.
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12
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Hornung AL, Hornung CM, Mallow GM, Barajas JN, Rush A, Sayari AJ, Galbusera F, Wilke HJ, Colman M, Phillips FM, An HS, Samartzis D. Artificial intelligence in spine care: current applications and future utility. EUROPEAN SPINE JOURNAL : OFFICIAL PUBLICATION OF THE EUROPEAN SPINE SOCIETY, THE EUROPEAN SPINAL DEFORMITY SOCIETY, AND THE EUROPEAN SECTION OF THE CERVICAL SPINE RESEARCH SOCIETY 2022; 31:2057-2081. [PMID: 35347425 DOI: 10.1007/s00586-022-07176-0] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/17/2021] [Revised: 01/18/2022] [Accepted: 03/08/2022] [Indexed: 01/20/2023]
Abstract
PURPOSE The field of artificial intelligence is ever growing and the applications of machine learning in spine care are continuously advancing. Given the advent of the intelligence-based spine care model, understanding the evolution of computation as it applies to diagnosis, treatment, and adverse event prediction is of great importance. Therefore, the current review sought to synthesize findings from the literature at the interface of artificial intelligence and spine research. METHODS A narrative review was performed based on the literature of three databases (MEDLINE, CINAHL, and Scopus) from January 2015 to March 2021 that examined historical and recent advancements in the understanding of artificial intelligence and machine learning in spine research. Studies were appraised for their role in, or description of, advancements within image recognition and predictive modeling for spinal research. Only English articles that fulfilled inclusion criteria were ultimately incorporated in this review. RESULTS This review briefly summarizes the history and applications of artificial intelligence and machine learning in spine. Three basic machine learning training paradigms: supervised learning, unsupervised learning, and reinforced learning are also discussed. Artificial intelligence and machine learning have been utilized in almost every facet of spine ranging from localization and segmentation techniques in spinal imaging to pathology specific algorithms which include but not limited to; preoperative risk assessment of postoperative complications, screening algorithms for patients at risk of osteoporosis and clustering analysis to identify subgroups within adolescent idiopathic scoliosis. The future of artificial intelligence and machine learning in spine surgery is also discussed with focusing on novel algorithms, data collection techniques and increased utilization of automated systems. CONCLUSION Improvements to modern-day computing and accessibility to various imaging modalities allow for innovative discoveries that may arise, for example, from management. Given the imminent future of AI in spine surgery, it is of great importance that practitioners continue to inform themselves regarding AI, its goals, use, and progression. In the future, it will be critical for the spine specialist to be able to discern the utility of novel AI research, particularly as it continues to pervade facets of everyday spine surgery.
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Affiliation(s)
- Alexander L Hornung
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | | | - G Michael Mallow
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - J Nicolás Barajas
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Augustus Rush
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Arash J Sayari
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | | | - Hans-Joachim Wilke
- Institute of Orthopaedic Research and Biomechanics, Trauma Research Center Ulm, Ulm University, Ulm, Germany
| | - Matthew Colman
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Frank M Phillips
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Howard S An
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA
| | - Dino Samartzis
- Department of Orthopaedic Surgery, Rush University Medical Center, Chicago, IL, USA.
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13
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Qu B, Cao J, Qian C, Wu J, Lin J, Wang L, Ou-Yang L, Chen Y, Yan L, Hong Q, Zheng G, Qu X. Current development and prospects of deep learning in spine image analysis: a literature review. Quant Imaging Med Surg 2022; 12:3454-3479. [PMID: 35655825 PMCID: PMC9131328 DOI: 10.21037/qims-21-939] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2021] [Accepted: 03/04/2022] [Indexed: 10/07/2023]
Abstract
BACKGROUND AND OBJECTIVE As the spine is pivotal in the support and protection of human bodies, much attention is given to the understanding of spinal diseases. Quick, accurate, and automatic analysis of a spine image greatly enhances the efficiency with which spine conditions can be diagnosed. Deep learning (DL) is a representative artificial intelligence technology that has made encouraging progress in the last 6 years. However, it is still difficult for clinicians and technicians to fully understand this rapidly evolving field due to the diversity of applications, network structures, and evaluation criteria. This study aimed to provide clinicians and technicians with a comprehensive understanding of the development and prospects of DL spine image analysis by reviewing published literature. METHODS A systematic literature search was conducted in the PubMed and Web of Science databases using the keywords "deep learning" and "spine". Date ranges used to conduct the search were from 1 January, 2015 to 20 March, 2021. A total of 79 English articles were reviewed. KEY CONTENT AND FINDINGS The DL technology has been applied extensively to the segmentation, detection, diagnosis, and quantitative evaluation of spine images. It uses static or dynamic image information, as well as local or non-local information. The high accuracy of analysis is comparable to that achieved manually by doctors. However, further exploration is needed in terms of data sharing, functional information, and network interpretability. CONCLUSIONS The DL technique is a powerful method for spine image analysis. We believe that, with the joint efforts of researchers and clinicians, intelligent, interpretable, and reliable DL spine analysis methods will be widely applied in clinical practice in the future.
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Affiliation(s)
- Biao Qu
- Department of Instrumental and Electrical Engineering, Xiamen University, Xiamen, China
| | - Jianpeng Cao
- Department of Electronic Science, Biomedical Intelligent Cloud R&D Center, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
| | - Chen Qian
- Department of Electronic Science, Biomedical Intelligent Cloud R&D Center, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
| | - Jinyu Wu
- Department of Electronic Science, Biomedical Intelligent Cloud R&D Center, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
| | - Jianzhong Lin
- Department of Radiology, Zhongshan Hospital of Xiamen University, Xiamen, China
| | - Liansheng Wang
- Department of Computer Science, School of Informatics, Xiamen University, Xiamen, China
| | - Lin Ou-Yang
- Department of Medical Imaging of Southeast Hospital, Medical College of Xiamen University, Zhangzhou, China
| | - Yongfa Chen
- Department of Pediatric Orthopedic Surgery, The First Affiliated Hospital of Xiamen University, Xiamen, China
| | - Liyue Yan
- Department of Information & Computational Mathematics, Xiamen University, Xiamen, China
| | - Qing Hong
- Biomedical Intelligent Cloud R&D Center, China Mobile Group, Xiamen, China
| | - Gaofeng Zheng
- Department of Instrumental and Electrical Engineering, Xiamen University, Xiamen, China
| | - Xiaobo Qu
- Department of Electronic Science, Biomedical Intelligent Cloud R&D Center, Fujian Provincial Key Laboratory of Plasma and Magnetic Resonance, National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, China
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14
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Abstract
Recently, deep learning algorithms have become one of the most popular methods and forms of algorithms used in the medical imaging analysis process. Deep learning tools provide accuracy and speed in the process of diagnosing and classifying lumbar spine problems. Disk herniation and spinal stenosis are two of the most common lower back diseases. The process of diagnosing pain in the lower back can be considered costly in terms of time and available expertise. In this paper, we used multiple approaches to overcome the problem of lack of training data in disc state classification and to enhance the performance of disc state classification tasks. To achieve this goal, transfer learning from different datasets and a proposed region of interest (ROI) technique were implemented. It has been demonstrated that using transfer learning from the same domain as the target dataset may increase performance dramatically. Applying the ROI method improved the disc state classification results in VGG19 2%, ResNet50 16%, MobileNetV2 5%, and VGG16 2%. The results improved VGG16 4% and in VGG19 6%, compared with the transfer from ImageNet. Moreover, it has been stated that the closer the data to be classified is to the data that the system trained on, the better the achieved results will be.
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15
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Stumpo V, Kernbach JM, van Niftrik CHB, Sebök M, Fierstra J, Regli L, Serra C, Staartjes VE. Machine Learning Algorithms in Neuroimaging: An Overview. ACTA NEUROCHIRURGICA. SUPPLEMENT 2021; 134:125-138. [PMID: 34862537 DOI: 10.1007/978-3-030-85292-4_17] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Machine learning (ML) and artificial intelligence (AI) applications in the field of neuroimaging have been on the rise in recent years, and their clinical adoption is increasing worldwide. Deep learning (DL) is a field of ML that can be defined as a set of algorithms enabling a computer to be fed with raw data and progressively discover-through multiple layers of representation-more complex and abstract patterns in large data sets. The combination of ML and radiomics, namely the extraction of features from medical images, has proven valuable, too: Radiomic information can be used for enhanced image characterization and prognosis or outcome prediction. This chapter summarizes the basic concepts underlying ML application for neuroimaging and discusses technical aspects of the most promising algorithms, with a specific focus on Convolutional Neural Networks (CNNs) and Generative Adversarial Networks (GANs), in order to provide the readership with the fundamental theoretical tools to better understand ML in neuroimaging. Applications are highlighted from a practical standpoint in the last section of the chapter, including: image reconstruction and restoration, image synthesis and super-resolution, registration, segmentation, classification, and outcome prediction.
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Affiliation(s)
- Vittorio Stumpo
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Julius M Kernbach
- Neurosurgical Artificial Intelligence Lab Aachen (NAILA), Department of Neurosurgery, RWTH University Hospital, Aachen, Germany
- Department of Neurosurgery, Faculty of Medicine, RWTH Aachen University, Aachen, Germany
| | - Christiaan H B van Niftrik
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Martina Sebök
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Jorn Fierstra
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Luca Regli
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Carlo Serra
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland
| | - Victor E Staartjes
- Machine Intelligence in Clinical Neuroscience (MICN) Lab, Department of Neurosurgery, Clinical Neuroscience Center, University Hospital Zurich, University of Zurich, Zurich, Switzerland.
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16
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Wang D, Fan G, Yin B, Zhou Z, Qiang M, Wang J, Chen Y, Zhang H. Surgically Relevant Morphological Parameters of the L5-S1 Interlaminar Window: A Statistical Analysis Based on 3D Reconstruction of CT Data. J Neurol Surg A Cent Eur Neurosurg 2021. [PMID: 34784623 DOI: 10.1055/a-1698-6384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
Abstract
STUDY DESIGN Retrospective study. OBJECTIVES The interlaminar window is the most important anatomical corridor for posterior approach of lumbar procedures. Three-dimensional (3D) reconstruction of the L5-S1 interlaminar window may benefit the accurate measurement and assessment of surgical considerations. The aim of this study was to measure surgical relevant parameters of the L5-S1 interlaminar window based on 3D reconstruction of lumbar CTs. METHODS 50 thin-layer CT data were retrospectively collected, segmented, and reconstructed. Surgical relevant parameters included the width, left height, right height, interpedicular distance, area, and operable area of the L5-S1 interlaminar window. Morphological measurements were performed independently by two experienced experts. Patients with radiologic abnormalities at L5-S1 level were regarded as group A (n=28), while those without L5-S1 disc herniation were regarded as group B (n=22). RESULTS The average left height, right height, width, and area of the L5-S1 interlaminar window were 9.14±2.45mm, 9.55±2.56mm, 23.55±4.91mm, and 144.57±57.05mm2. The average interpedicular distance (IPD) at superior, middle, and inferior pedicle level were 29.29±3.39mm, 27.96±3.38mm and 37.46±4.23mm, with significant differences among these three parameters (P<0.05). The average operable areas of the L5-S1 interlaminar window were: left-axilla 24.52±15.91mm2, left-shoulder 27.14±15.48mm2, right-axilla 29.95±17.17mm2, and right-shoulder 31.12±16.40mm2 (P>0.05). There were no significant differences between group A and B in these parameters (P>0.05), except the inferior IPD (36.69±3.73mm vs 39.23±3.01mm, P=0.017<0.05). CONCLUSION The morphological measurement of the L5-S1 interlaminar window based on 3D reconstruction provided accurate and reliable reference data for epidural puncture approach and posterior approach of lumbar surgery. Moreover, it could also assist the placement of endoscopic working channel in percutaneous endoscopic interlaminar discectomy (PEID) and might be useful for further studies of anatomical and surgical consideration of unilateral biportal endoscopic spinal surgery (UBE) procedures. Key words: Interlaminar window; percutaneous endoscopic interlaminar discectomy (PEID); unilateral biportal endoscopy spinal surgery (UBE); 3D reconstruction.
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Affiliation(s)
- Dongdong Wang
- Orthopaedics, Shanghai General Hospital, Shanghai, China
| | - Guoxin Fan
- Intelligent and Digital Surgery Innovation Center, Southern University of Science and Technology Hospital, Shenzhen, China
| | - Bangde Yin
- Orthopaedics, Shanghai Tenth People's Hospital, Shanghai, China
| | - Zhi Zhou
- Orthopaedics, Shanghai Tenth People's Hospital, Shanghai, China
| | - Minfei Qiang
- Orthopaedic Surgery, Zhongshan Hospital Fudan University, Shanghai, China
| | - Jin Wang
- Clinical Medicine, Tongji University School of Medicine, Shanghai, China
| | - Yanxi Chen
- Orthopaedic Surgery, Zhongshan Hospital Fudan University, Shanghai, China
| | - Hailong Zhang
- Orthopedics, Shanghai Putuo People`s Hospital, Tongji University School of Medicine, Shanghai, China
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Kitamura FC, Pan I, Ferraciolli SF, Yeom KW, Abdala N. Clinical Artificial Intelligence Applications in Radiology: Neuro. Radiol Clin North Am 2021; 59:1003-1012. [PMID: 34689869 DOI: 10.1016/j.rcl.2021.07.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Abstract
Radiologists have been at the forefront of the digitization process in medicine. Artificial intelligence (AI) is a promising area of innovation, particularly in medical imaging. The number of applications of AI in neuroradiology has also grown. This article illustrates some of these applications. This article reviews machine learning challenges related to neuroradiology. The first approval of reimbursement for an AI algorithm by the Centers for Medicare and Medicaid Services, covering a stroke software for early detection of large vessel occlusion, is also discussed.
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Affiliation(s)
- Felipe Campos Kitamura
- DasaInova, Diagnósticos da América SA (Dasa), São Paulo, São Paulo, Brazil; Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil.
| | - Ian Pan
- DasaInova, Diagnósticos da América SA (Dasa), São Paulo, São Paulo, Brazil; Brigham and Woman's Hospital, Boston, MA, USA
| | | | | | - Nitamar Abdala
- Universidade Federal de São Paulo, São Paulo, São Paulo, Brazil
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18
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Impact of transfer learning for human sperm segmentation using deep learning. Comput Biol Med 2021; 136:104687. [PMID: 34364259 DOI: 10.1016/j.compbiomed.2021.104687] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2021] [Revised: 07/18/2021] [Accepted: 07/23/2021] [Indexed: 12/23/2022]
Abstract
BACKGROUND AND OBJECTIVE Infertility affects approximately one in ten couples, and almost half of the infertility cases are due to the malefactor. To diagnose infertility and determine future treatment, a semen analysis is performed. Evaluation of sperm morphology is one of several steps in semen analysis, in which the shape and size of sperm parts are examined. The laboratories dedicated to this use traditional methods susceptible to errors. An alternative to replace the poor visual ability to assess sperm size and shape is to analyze sperm morphology with a computer's help. However, since the automatic sperm classification rates do not show an acceptable precision rate for use in the clinical setting, it is considered an exciting approach to focus efforts on improving the precision in sperm segmentation to extract the contour sperm before classification. This work aims to assess the utility of two image segmentation deep learning models for segmenting human sperm heads, acrosome, and nucleus. METHODS In this work, we evaluate the use of two well-known deep learning architectures (U-Net and Mask-RCNN) to segment parts of human sperm cells using data augmentation, cross-validation, hyperparameter tuning, and transfer learning. The experimental results are carried out using SCIAN-SpermSegGS, a public dataset with more than two hundred manually segmented sperm cells and widely used to validate segmentation methods of human sperm parts. RESULTS Experimental evaluation shows that U-net with transfer learning achieves up to 95% overlapping against hand-segmented masks for sperm head (0.96), acrosome (0.94), and nucleus (0.95), using Dice coefficient as the evaluation metric. These results outperform state-of-the-art sperm parts segmentation methods. CONCLUSIONS The impact of transfer learning is substantial, significantly improving the results of state-of-the-art methods with a higher Dice coefficient, less dispersion, and fewer cases where the model failed to segment sperm parts. These results represent a promising advance in the ultimate goal of performing computer-assisted morphological sperm analysis.
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Wang D, Li M, Ben-Shlomo N, Corrales CE, Cheng Y, Zhang T, Jayender J. A novel dual-network architecture for mixed-supervised medical image segmentation. Comput Med Imaging Graph 2021; 89:101841. [PMID: 33756304 PMCID: PMC8084108 DOI: 10.1016/j.compmedimag.2020.101841] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2020] [Revised: 11/01/2020] [Accepted: 12/07/2020] [Indexed: 11/15/2022]
Abstract
In medical image segmentation tasks, deep learning-based models usually require densely and precisely annotated datasets to train, which are time-consuming and expensive to prepare. One possible solution is to train with the mixed-supervised dataset, where only a part of data is densely annotated with segmentation map and the rest is annotated with some weak form, such as bounding box. In this paper, we propose a novel network architecture called Mixed-Supervised Dual-Network (MSDN), which consists of two separate networks for the segmentation and detection tasks respectively, and a series of connection modules between the layers of the two networks. These connection modules are used to extract and transfer useful information from the detection task to help the segmentation task. We exploit a variant of a recently designed technique called 'Squeeze and Excitation' in the connection module to boost the information transfer between the two tasks. Compared with existing model with shared backbone and multiple branches, our model has flexible and trainable feature sharing fashion and thus is more effective and stable. We conduct experiments on 4 medical image segmentation datasets, and experiment results show that the proposed MSDN model outperforms multiple baselines.
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Affiliation(s)
- Duo Wang
- Department of Automation, Tsinghua University, Beijing 100084, China; Department of Radiology, Brigham and Women's Hospital, Boston 02115, USA.
| | - Ming Li
- Department of Radiology, Huadong Hospital affiliated to Fudan University, Shanghai 200040, China.
| | - Nir Ben-Shlomo
- Department of Surgery, Brigham and Women's Hospital, Boston 02115, USA.
| | - C Eduardo Corrales
- Department of Surgery, Brigham and Women's Hospital, Boston 02115, USA; Harvard Medical School, Boston 02115, USA.
| | - Yu Cheng
- Microsoft AI & Research, Redmond, WA, USA.
| | - Tao Zhang
- Department of Automation, Tsinghua University, Beijing 100084, China; Beijing National Research Center for Information Science and Technology, Tsinghua University, Beijing 100084, China.
| | - Jagadeesan Jayender
- Department of Radiology, Brigham and Women's Hospital, Boston 02115, USA; Harvard Medical School, Boston 02115, USA.
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20
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Carson T, Ghoshal G, Cornwall GB, Tobias R, Schwartz DG, Foley KT. Artificial Intelligence-enabled, Real-time Intraoperative Ultrasound Imaging of Neural Structures Within the Psoas: Validation in a Porcine Spine Model. Spine (Phila Pa 1976) 2021; 46:E146-E152. [PMID: 33399436 PMCID: PMC7787186 DOI: 10.1097/brs.0000000000003704] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/27/2020] [Revised: 06/28/2020] [Accepted: 08/13/2020] [Indexed: 02/01/2023]
Abstract
STUDY DESIGN Experimental in-vivo animal study. OBJECTIVE The aim of this study was to evaluate an Artificial Intelligence (AI)-enabled ultrasound imaging system's ability to detect, segment, classify, and display neural and other structures during trans-psoas spine surgery. SUMMARY OF BACKGROUND DATA Current methodologies for intraoperatively localizing and visualizing neural structures within the psoas are limited and can impact the safety of lateral lumbar interbody fusion (LLIF). Ultrasound technology, enhanced with AI-derived neural detection algorithms, could prove useful for this task. METHODS The study was conducted using an in vivo porcine model (50 subjects). Image processing and machine learning algorithms were developed to detect neural and other anatomic structures within and adjacent to the psoas muscle while using an ultrasound imaging system during lateral lumbar spine surgery (SonoVision,™ Tissue Differentiation Intelligence, USA). The imaging system's ability to detect and classify the anatomic structures was assessed with subsequent tissue dissection. Dice coefficients were calculated to quantify the performance of the image segmentation. RESULTS The AI-trained ultrasound system detected, segmented, classified, and displayed nerve, psoas muscle, and vertebral body surface with high sensitivity and specificity. The mean Dice coefficient score for each tissue type was >80%, indicating that the detected region and ground truth were >80% similar to each other. The mean specificity of nerve detection was 92%; for bone and muscle, it was >95%. The accuracy of nerve detection was >95%. CONCLUSION This study demonstrates that a combination of AI-derived image processing and machine learning algorithms can be developed to enable real-time ultrasonic detection, segmentation, classification, and display of critical anatomic structures, including neural tissue, during spine surgery. AI-enhanced ultrasound imaging can provide a visual map of important anatomy in and adjacent to the psoas, thereby providing the surgeon with critical information intended to increase the safety of LLIF surgery.Level of Evidence: N/A.
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Affiliation(s)
- Tyler Carson
- NeuroSpine Institute, Palmdale, CA
- Riverside University Health System, Department of Neurosurgery, Moreno Valley, CA
| | | | | | | | | | - Kevin T. Foley
- Semmes-Murphey Clinic & Department of Neurosurgery, University of Tennessee Health Science Center, Memphis, TN
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21
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Fan G, Liu H, Wang D, Feng C, Li Y, Yin B, Zhou Z, Gu X, Zhang H, Lu Y, He S. Deep learning-based lumbosacral reconstruction for difficulty prediction of percutaneous endoscopic transforaminal discectomy at L5/S1 level: A retrospective cohort study. Int J Surg 2020; 82:162-169. [PMID: 32882401 DOI: 10.1016/j.ijsu.2020.08.036] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2020] [Revised: 07/30/2020] [Accepted: 08/19/2020] [Indexed: 01/11/2023]
Abstract
BACKGROUND Deep learning has been validated as a promising technique for automatic segmentation and rapid three-dimensional (3D) reconstruction of lumbosacral structures on CT. Simulated foraminoplasty of percutaneous endoscopic transforaminal discectomy (PETD) through the Kambin triangle may benefit viability assessment of PETD at L5/S1 level. MATERIAL AND METHODS Medical records and radiographic data of patients with L5/S1 lumbar disc herniation (LDH) who received a single-level PETD from March 2013 to February 2018 were retrospectively collected and analyzed. Deep learning was adopted to achieve semantic segmentation of lumbosacral structures (nerve, bone, disc) on CT, and the segmented masks on reconstructed 3D models. Two observers measured the area of the Kambin triangle on 6 selected deep learning-derived 3D (DL-3D) models and ground truth-derived 3D (GT-3D) models, and intraclass correlation coefficient (ICC) was calculated to assess the test-retest and interobserver reliability. Foraminoplasty of PETD was simulated on L5/S1 lumbosacral 3D models. Patients with extended foraminoplasty or stuck canula occurs on simulations were predicted as PETD-difficult cases (Group A). The remaining patients were regarded as PETD-normal cases (Group B). Clinical information and outcomes were compared between the two groups. RESULTS Deep learning-derived 3D models of lumbosacral structures (nerves, bones, and disc) from thin-layer CT were reliable. The area of the Kambin triangle was 161.27 ± 40.10 mm2 on DL-3D models and 153.57 ± 32.37 mm2 on GT-3D models (p = 0.206). Reliability test revealed strong test-retest reliability (ICC between 0.947 and 0.971) and interobserver reliability of multiple measurements (ICC between 0.866 and 0.961). The average operation time was 99.62 ± 17.39 min in Group A and 88.93 ± 21.87 min in Group B (P = 0.025). No significant differences in patient-reported outcomes or complications were observed between the two groups (P > 0.05). CONCLUSION Deep learning achieved accurate and rapid segmentations of lumbosacral structures on CT, and deep learning-based 3D reconstructions were efficacious and reliable. Foraminoplasty simulation with deep learning-based lumbosacral reconstructions may benefit surgical difficulty prediction of PETD at L5/S1 level.
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Affiliation(s)
- Guoxin Fan
- Department of Spine Surgery, Third Affiliated Hospital, Sun Yat-sen University, Guangzhou, China; Department of Orthopaedics, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China.
| | - Huaqing Liu
- Artificial Intelligence Innovation Center, Research Institute of Tsinghua, Pearl River Delta, Guangzhou, 510735, China
| | - Dongdong Wang
- Department of Orthopaedic Trauma, East Hospital, Tongji University School of Medicine, Shanghai, China
| | - Chaobo Feng
- Department of Orthopaedics, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China; Spinal Pain Research Institute, Tongji University School of Medicine, Shanghai, China
| | - Yufeng Li
- Department of Sports Medicine, Shanghai Jiao Tong University Affiliated Sixth People's Hospital, Shanghai, China
| | - Bangde Yin
- Department of Orthopaedics, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Zhi Zhou
- Department of Orthopaedics, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China; Spinal Pain Research Institute, Tongji University School of Medicine, Shanghai, China
| | - Xin Gu
- Department of Orthopaedics, Changzheng Hospital Affiliated to the Second Military Medical University, Shanghai, China
| | - Hailong Zhang
- Department of Orthopaedics, Shanghai Putuo People's Hospital, Tongji University School of Medicine, Shanghai, China
| | - Yi Lu
- Department of Neurosurgery, Brigham and Women's Hospital, Harvard Medical School, Boston, USA
| | - Shisheng He
- Department of Orthopaedics, Shanghai Tenth People's Hospital, Tongji University School of Medicine, Shanghai, China; Spinal Pain Research Institute, Tongji University School of Medicine, Shanghai, China.
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22
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Zhou J, Damasceno PF, Chachad R, Cheung JR, Ballatori A, Lotz JC, Lazar AA, Link TM, Fields AJ, Krug R. Automatic Vertebral Body Segmentation Based on Deep Learning of Dixon Images for Bone Marrow Fat Fraction Quantification. Front Endocrinol (Lausanne) 2020; 11:612. [PMID: 32982989 PMCID: PMC7492292 DOI: 10.3389/fendo.2020.00612] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Accepted: 07/27/2020] [Indexed: 12/16/2022] Open
Abstract
Background: Bone marrow fat (BMF) fraction quantification in vertebral bodies is used as a novel imaging biomarker to assess and characterize chronic lower back pain. However, manual segmentation of vertebral bodies is time consuming and laborious. Purpose: (1) Develop a deep learning pipeline for segmentation of vertebral bodies using quantitative water-fat MRI. (2) Compare BMF measurements between manual and automatic segmentation methods to assess performance. Materials and Methods: In this retrospective study, MR images using a 3D spoiled gradient-recalled echo (SPGR) sequence with Iterative Decomposition of water and fat with Echo Asymmetry and Least-squares estimation (IDEAL) reconstruction algorithm were obtained in 57 subjects (28 women, 29 men, mean age, 47.2 ± 12.6 years). An artificial network was trained for 100 epochs on a total of 165 lumbar vertebrae manually segmented from 31 subjects. Performance was assessed by analyzing the receiver operating characteristic curve, precision-recall, F1 scores, specificity, sensitivity, and similarity metrics. Bland-Altman analysis was used to assess performance of BMF fraction quantification using the predicted segmentations. Results: The deep learning segmentation method achieved an AUC of 0.92 (CI 95%: 0.9186, 0.9195) on a testing dataset (n = 24 subjects) on classification of pixels as vertebrae. A sensitivity of 0.99 and specificity of 0.80 were achieved for a testing dataset, and a mean Dice similarity coefficient of 0.849 ± 0.091. Comparing manual and automatic segmentations on fat fraction maps of lumbar vertebrae (n = 124 vertebral bodies) using Bland-Altman analysis resulted in a bias of only -0.605% (CI 95% = -0.847 to -0.363%) and agreement limits of -3.275% and +2.065%. Automatic segmentation was also feasible in 16 ± 1 s. Conclusion: Our results have demonstrated the feasibility of automated segmentation of vertebral bodies using deep learning models on water-fat MR (Dixon) images to define vertebral regions of interest with high specificity. These regions of interest can then be used to quantify BMF with comparable results as manual segmentation, providing a framework for completely automated investigation of vertebral changes in CLBP.
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Affiliation(s)
- Jiamin Zhou
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Pablo F. Damasceno
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
- Bakar Computational Health Sciences Institute, University of California, San Francisco, San Francisco, CA, United States
- Center for Intelligent Imaging, University of California, San Francisco, San Francisco, CA, United States
| | - Ravi Chachad
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Justin R. Cheung
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Alexander Ballatori
- Department of Orthopaedic Surgery, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Jeffrey C. Lotz
- Department of Orthopaedic Surgery, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Ann A. Lazar
- Department of Preventive and Restorative Dental Sciences, School of Dentistry, University of California, San Francisco, San Francisco, CA, United States
- Department of Epidemiology and Biostatistics, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Thomas M. Link
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Aaron J. Fields
- Department of Orthopaedic Surgery, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
| | - Roland Krug
- Department of Radiology and Biomedical Imaging, School of Medicine, University of California, San Francisco, San Francisco, CA, United States
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23
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Werth K, Ledbetter L. Artificial Intelligence in Head and Neck Imaging: A Glimpse into the Future. Neuroimaging Clin N Am 2020; 30:359-368. [PMID: 32600636 DOI: 10.1016/j.nic.2020.04.004] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Artificial intelligence, specifically machine learning and deep learning, is a rapidly developing field in imaging sciences with the potential to improve the efficiency and effectiveness of radiologists. This review covers common technical terms and basic concepts in imaging artificial intelligence and briefly reviews the application of these techniques to general imaging as well as head and neck imaging. Artificial intelligence has the potential to contribute improvements to all areas of patient care, including image acquisition, processing, segmentation, automated detection of findings, integration of clinical information, quality improvement, and research. Numerous challenges remain, however, before widespread imaging clinical adoption and integration occur.
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Affiliation(s)
- Kyle Werth
- Department of Radiology, University of Kansas Medical Center, 3901 Rainbow Boulevard, Mailstop 4032, Kansas City, KS 66160, USA
| | - Luke Ledbetter
- Department of Radiology, David Geffen School of Medicine at UCLA, 757 Westwood Plaza, Suite 1621D, Los Angeles, CA 90095, USA.
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24
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Wang D, Li M, Ben-Shlomo N, Corrales CE, Cheng Y, Zhang T, Jayender J. Mixed-Supervised Dual-Network for Medical Image Segmentation. MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION : MICCAI ... INTERNATIONAL CONFERENCE ON MEDICAL IMAGE COMPUTING AND COMPUTER-ASSISTED INTERVENTION 2019; 11765:192-200. [PMID: 32395724 PMCID: PMC7213952 DOI: 10.1007/978-3-030-32245-8_22] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
Deep learning based medical image segmentation models usually require large datasets with high-quality dense segmentations to train, which are very time-consuming and expensive to prepare. One way to tackle this difficulty is using the mixed-supervised learning framework, where only a part of data is densely annotated with segmentation label and the rest is weakly labeled with bounding boxes. The model is trained jointly in a multi-task learning setting. In this paper, we propose Mixed-Supervised Dual-Network (MSDN), a novel architecture which consists of two separate networks for the detection and segmentation tasks respectively, and a series of connection modules between the layers of the two networks. These connection modules are used to transfer useful information from the auxiliary detection task to help the segmentation task. We propose to use a recent technique called 'Squeeze and Excitation' in the connection module to boost the transfer. We conduct experiments on two medical image segmentation datasets. The proposed MSDN model outperforms multiple baselines.
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Affiliation(s)
- Duo Wang
- Department of Automation, Tsinghua University, Beijing, China
- Department of Radiology, Brigham and Women's Hospital, Boston, USA
| | - Ming Li
- Department of Radiology and Radiation Oncology, Huadong Hospital affiliated to Fudan University, Shanghai, China
| | - Nir Ben-Shlomo
- Department of Surgery, Brigham and Women's Hospital, Boston, USA
| | - C Eduardo Corrales
- Department of Surgery, Brigham and Women's Hospital, Boston, USA
- Harvard Medical School, Boston, USA
| | - Yu Cheng
- Microsoft AI & Research, Redmond, WA, USA
| | - Tao Zhang
- Department of Automation, Tsinghua University, Beijing, China
| | - Jagadeesan Jayender
- Department of Radiology, Brigham and Women's Hospital, Boston, USA
- Harvard Medical School, Boston, USA
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