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Yakunin SN, Novikova NN, Rogachev AV, Trigub AL, Kuzmicheva GM, Stepina ND, Rozenberg OA, Yurieva EA, Kovalchuk MV. Spectral-Selective X-Ray Studies at the “Langmuir” Beamline of the Kurchatov Synchrotron Radiation Source. CRYSTALLOGR REP+ 2022. [DOI: 10.1134/s1063774522060293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
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Dyakova YA, Kovalchuk MV. Protein Self-Assembly in Crystals and Films. CRYSTALLOGR REP+ 2022. [DOI: 10.1134/s1063774522050030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Folomeshkin MS, Boikova AS, Volkovsky YA, Marchenkova MA, Prosekov PA, Seregin AY. Refined Structure of Langmuir Lysozyme Films on Single-Crystal Silicon Wafers According to X-Ray Reflectivity Data. CRYSTALLOGR REP+ 2020. [DOI: 10.1134/s1063774520060152] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Yatsishina EB, Vasilyev SV, Vasilieva OA, Galeev RM, Dyuzheva OP, Kovalchuk MV. CT-Scanning Analysis of the Inner Structure of Ancient Egyptian Mummy. CRYSTALLOGR REP+ 2020. [DOI: 10.1134/s1063774520060401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Boikova AS, D’yakova YA, Il’ina KB, Marchenkova MA, Seregin AY, Prosekov PA, Volkovsky YA, Pisarevsky YV, Koval’chuk MV. Fabrication of Multilayer Films on the Basis of Lysozyme Protein and Precipitant (Iodide and Potassium) Ions on a Silicon Substrate by the Modified Langmuir–Schaefer Method. CRYSTALLOGR REP+ 2018. [DOI: 10.1134/s1063774518050061] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Novikova NN, Yakunin SN, Morozov VN, Shlyapnikova EA, Kanev IL, Shlyapnikov YM, Stepina ND, Rogachev AV, Koval’chuk MV. Studying the Molecular Mechanisms of Interaction of Nanoaerosol Particles with a Model Membrane. CRYSTALLOGR REP+ 2018. [DOI: 10.1134/s1063774518020165] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kovalchuk MV, Boikova AS, Dyakova YA, Marchenkova MA, Opolchentsev AM, Pisarevsky YV, Prosekov PA, Seregin AY. Modification of the Langmuir–Schaefer method for fabrication of ordered protein films. CRYSTALLOGR REP+ 2017. [DOI: 10.1134/s1063774517040125] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Novikova NN, Kovalchuk MV, Yakunin SN, Konovalov OV, Stepina ND, Rogachev AV, Yurieva EA, Marchenko IV, Bukreeva TV, Ivanova OS, Baranchikov AE, Ivanov VK. Possibilities of surface-sensitive X-ray methods for studying the molecular mechanisms of interaction of nanoparticles with model membranes. CRYSTALLOGR REP+ 2016. [DOI: 10.1134/s1063774516050163] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Dyakova YA, Marchenkova MA. Formation of partially ordered organic planar systems based on the in situ control of their structural organization. CRYSTALLOGR REP+ 2016. [DOI: 10.1134/s1063774516050060] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Blagov AE, Dyakova YA, Kovalchuk MV, Kohn VG, Marchenkova MA, Pisarevskiy YV, Prosekov PA. X-ray diffraction and X-ray standing-wave study of the lead stearate film structure. CRYSTALLOGR REP+ 2016. [DOI: 10.1134/s1063774516030044] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Novikova N, Kovalchuk M, Stepina N, Gaynutdinov R, Chukhrai E, Yurieva E. Distinct effect of xenobiotics on the metal-binding properties of protein molecules. JOURNAL OF SYNCHROTRON RADIATION 2015; 22:1001-1007. [PMID: 26134804 DOI: 10.1107/s1600577515005627] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2014] [Accepted: 03/18/2015] [Indexed: 06/04/2023]
Abstract
The X-ray standing-wave method was applied to study the elemental composition and molecular organization of ordered protein films of alkaline phosphatase exposed to different xenobiotics (drug compounds, lead). Binding of metal ions from triply distilled water to protein molecules has been experimentally observed. Definite differences in the arrangement of impurity metal ions in the films have been established. The considerable enhancement of protein-metal interactions is attributed to partial rearrangement of the protein native structure, induced by xenobiotics.
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Affiliation(s)
- Natalia Novikova
- National Research Centre `Kurchatov Institute', Akademika Kurchatova pl. 1, Moscow 123182, Russia
| | - Mikhail Kovalchuk
- National Research Centre `Kurchatov Institute', Akademika Kurchatova pl. 1, Moscow 123182, Russia
| | - Nina Stepina
- Shubnikov Institute of Crystallography, Russian Academy of Sciences, Leninskii pr. 59, Moscow 119333, Russia
| | - Radmir Gaynutdinov
- Shubnikov Institute of Crystallography, Russian Academy of Sciences, Leninskii pr. 59, Moscow 119333, Russia
| | - Elena Chukhrai
- Department of Chemistry, Lomonosov Moscow State University, GSP-1, Leninskie Gory, Moscow 119991, Russia
| | - Eleonora Yurieva
- Institute of Pediatrics and Pediatric Surgery, Russian Academy of Medical Sciences, Taldomskaya str. 2, Moscow 125412, Russia
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Shcherbina MA, Chvalun SN, Ponomarenko SA, Kovalchuk MV. Modern approaches to investigation of thin films and monolayers: X-ray reflectivity, grazing-incidence X-ray scattering and X-ray standing waves. RUSSIAN CHEMICAL REVIEWS 2014. [DOI: 10.1070/rcr4485] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Nosik VL, Rudakova EB. Prospects of biomolecule sequencing with the techniques of translocation through nanopores: A review. CRYSTALLOGR REP+ 2013. [DOI: 10.1134/s1063774513060187] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Marchenkov NV, Blagov AE, Lomonov BA, Pisarevsky YV, Kovalchuk MV. Study of the defect structure of paratellurite crystal using multiwave diffraction and normal X-ray diffractometry methods. CRYSTALLOGR REP+ 2013. [DOI: 10.1134/s1063774513020168] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Ilyushin AS, Kovalchuk MV. The 100th anniversary of the discovery of X-ray diffraction. CRYSTALLOGR REP+ 2012. [DOI: 10.1134/s1063774512050069] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Novikova NN, Kovalchuk MV, Yur’eva EA, Konovalov OV, Rogachev AV, Stepina ND, Sukhorukov VS, Tsaregorodtsev AD, Chukhrai ES, Yakunin SN. Total external reflection X-ray fluorescence analysis of protein-metal ion interactions in biological systems. CRYSTALLOGR REP+ 2012. [DOI: 10.1134/s1063774512050124] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kohn VG, Kazimirov A. High-resolution study of (002, 113, 11-1) four-beam diffraction in Si. Acta Crystallogr A 2012; 68:331-6. [PMID: 22514065 DOI: 10.1107/s0108767312012305] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2012] [Accepted: 03/21/2012] [Indexed: 11/10/2022] Open
Abstract
The results of a high-resolution study of the (002, 113, 11 ̅1) four-beam diffraction in Si are presented. The incident synchrotron radiation beam was highly monochromated and collimated with a multi-crystal arrangement in a dispersive setup in both vertical and horizontal planes, in an attempt to experimentally approach plane-wave incident conditions. The Renninger scheme was used with the forbidden reflection reciprocal-lattice vector 002 normal to the crystal surface. The azimuthal and polar rotations were performed in the crystal surface plane and the vertical plane correspondingly. The polar angular curves for various azimuthal angles were measured and found to be very close to theoretical computer simulations, with only a small deviation from the plane monochromatic wave. The effect of the strong two-beam 002 diffraction was observed for the first time with the maximum reflectivity close to 80%. The structure factor of the 002 reflection in Si was experimentally determined as zero.
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Affiliation(s)
- V G Kohn
- National Research Center Kurchatov Institute, 123182 Moscow, Russian Federation.
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Svergun DI, Shtykova EV, Volkov VV, Feigin LA. Small-angle X-ray scattering, synchrotron radiation, and the structure of bio- and nanosystems. CRYSTALLOGR REP+ 2011. [DOI: 10.1134/s1063774511050221] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Kovalchuk MV. Crystallography as a methodology for scientific development in the 21st Century: A review. CRYSTALLOGR REP+ 2011. [DOI: 10.1134/s1063774511040092] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Molodkin V, Shpak A, Kovalchuk M, Machulin V, Nosik V. Multiparametric crystallography using the diversity of multiple scattering patterns for Bragg and diffuse waves. Method of standing diffuse waves. ACTA ACUST UNITED AC 2011. [DOI: 10.3367/ufnr.0181.201107a.0681] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/01/2022]
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Kohn VG. Program for calculating the scattering parameters used in the X-ray standing wave method. CRYSTALLOGR REP+ 2006. [DOI: 10.1134/s1063774506060034] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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Auleytner J, Godwod K, Pelka J. The Microcamera Used for Photoelectron Excited by the X-ray Standing Wave (XSW) Recording and Submicron Layer Structure Studies. CRYSTAL RESEARCH AND TECHNOLOGY 1995. [DOI: 10.1002/crat.2170300410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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