Effects of a myostatin mutation in Japanese quail (Coturnix japonica) on the physicochemical and histochemical characteristics of the pectoralis major muscle

The aim of this study was to compare the carcass, meat quality, and histochemical characteristics of pectoralis major (PM) muscle between wild type (WT) and myostatin (Mstn) homozygous mutant (HO) quail lines. The HO quail line exhibited significantly heavier body weight (HO vs. WT, 115.7 g vs. 106.2 g, approximately 110%) and PM muscle weight (HO vs. WT, 18.0 g vs. 15.2 g, approximately 120%) compared to the WT (p < 0.001). However, the two groups had similar traits (pH, redness, yellowness, and drip loss) for meat quality, although slightly higher lightness and cooking loss were observed in the mutant quail (103% and 141%, respectively, p < 0.05). For histochemical traits of PM muscle, Mstn mutant quail exhibited lower type IIA and higher type IIB percentage in the deep region than WT quail (p < 0.05), indicating a fiber conversion from the type IIA to IIB. However, the two quail lines had comparable histochemical traits in the superficial region (p > 0.05). These data suggest that Mstn mutation greatly increases muscle mass without significantly affecting meat quality.

Direct and maternal genetic effects for preinflection point growth traits and humoral immunity in quail

Early growth traits in quails are considered as the growth performances before the inflection point which are genetically different from body weights (BW) at later stages. Moreover, in addition to growth performance, humoral immunity is moderately heritable and is considered in some breeding programs. However, estimating the direct genetic, particularly the maternal genetic correlations between growth and immunity in quail, are not studied sufficiently, which were the aims of the present study. The quails' BW were recorded at hatch (BW0) to 25 d of age with a 5-d interval and body weight gains (BWG) were measured as average growth performance of the birds in a 5-d period. Antibody titer against Newcastle disease virus (IgN) was measured through the hemagglutination inhibition (HI) test. For titration of anti-SRBC antibodies (IgY and IgM), a hemagglutination microtiter assay was used. In general, growth records in 4,181 birds and humoral immune responses in 1,023 birds were assigned to the study. The genetic parameters were estimated by single-trait analysis via Gibb's sampling. After finding the best model for each trait, multi-trait analysis was done to estimate the direct and maternal genetic correlations. Direct heritabilities (h²) were estimated to be moderate for BW (0.481-0.551) and BWG (0.524-0.557), while h² for immune responses were low (0.035-0.079). Maternal environmental effect (c²) was only significant for BW0, BW5, and BWG0-5. Maternal heritabilities (m²) for BW and BWG were all lower than corresponding h², ranging from 0.072 (BW25) to 0.098 (BW0). The m² for IgN (0.098) was more than 2.5 times greater than h² (0.040) for this trait. Direct (r_a) and maternal (r_m) genetic correlations between IgN-BW, IgY-BW, and IgY-BWG were negative, while ra and rm for IgM-BW, IgN-BWG, and IgM-BWG were positive. The r_a between humoral immune responses were low to moderate and rm was significant only for IgY-IgM (0.339). Given positive genetic correlations in BWG-IgN and BWG-IgM as well as positive genetic correlations between both IgN and IgM with IgY, it is suggested that including the BWG in the breeding programs would directly result in the improvement of the birds' growth performance. It would also contribute indirectly to the improvement of the birds' humoral immune responses.

Genome-wide association study reveals candidate genes relevant to body weight in female turkeys (Meleagris gallopavo)

The underlying genetic mechanisms affecting turkey growth traits have not been widely investigated. Genome-wide association studies (GWAS) is a powerful approach to identify candidate regions associated with complex phenotypes and diseases in livestock. In the present study, we performed GWAS to identify regions associated with 18-week body weight in a turkey population. The data included body weight observations for 24,989 female turkeys genotyped based on a 65K SNP panel. The analysis was carried out using a univariate mixed linear model with hatch-week-year and the 2 top principal components fitted as fixed effects and the accumulated polygenic effect of all markers captured by the genomic relationship matrix as random. Thirty-three significant markers were observed on 1, 2, 3, 4, 7 and 12 chromosomes, while 26 showed strong linkage disequilibrium extending up to 410 kb. These significant markers were mapped to 37 genes, of which 13 were novel. Interestingly, many of the investigated genes are known to be involved in growth and body weight. For instance, genes AKR1D1, PARP12, BOC, NCOA1, ADCY3 and CHCHD7 regulate growth, body weight, metabolism, digestion, bile acid biosynthetic and development of muscle cells. In summary, the results of our study revealed novel candidate genomic regions and candidate genes that could be managed within a turkey breeding program and adapted in fine mapping of quantitative trait loci to enhance genetic improvement in this species.

How much energetic trade-offs limit selection? Insights from livestock and related laboratory model species

Trade-offs between life history traits are expected to occur due to the limited amount of resources that organisms can obtain and share among biological functions, but are of least concern for selection responses in nutrient-rich or benign environments. In domestic animals, selection limits have not yet been reached despite strong selection for higher meat, milk or egg yields. Yet, negative genetic correlations between productivity traits and health or fertility traits have often been reported, supporting the view that trade-offs do occur in the context of nonlimiting resources. The importance of allocation mechanisms in limiting genetic changes can thus be questioned when animals are mostly constrained by their time to acquire and process energy rather than by feed availability. Selection for high productivity traits early in life should promote a fast metabolism with less energy allocated to self-maintenance (contributing to soma preservation and repair). Consequently, the capacity to breed shortly after an intensive period of production or to remain healthy should be compromised. We assessed those predictions in mammalian and avian livestock and related laboratory model species. First, we surveyed studies that compared energy allocation to maintenance between breeds or lines of contrasting productivity but found little support for the occurrence of an energy allocation trade-off. Second, selection experiments for lower feed intake per unit of product (i.e. higher feed efficiency) generally resulted in reduced allocation to maintenance, but this did not entail fitness costs in terms of survival or future reproduction. These findings indicate that the consequences of a particular selection in domestic animals are much more difficult to predict than one could anticipate from the energy allocation framework alone. Future developments to predict the contribution of time constraints and trade-offs to selection limits will be insightful to breed livestock in increasingly challenging environments.

Investigating inbreeding in the turkey (Meleagris gallopavo) genome

The detrimental effects of increased homozygosity due to inbreeding have prompted the development of methods to reduce inbreeding. The detection of runs of homozygosity (ROH), or contiguous stretches of homozygous marker genotypes, can be used to describe and quantify the level of inbreeding in an individual. The estimation of inbreeding coefficients can be calculated based on pedigree information, ROH, or the genomic relationship matrix. The aim of this study was to detect and describe ROH in the turkey genome and compare estimates of pedigree-based inbreeding coefficients (F_PED) with genomic-based inbreeding coefficients estimated from ROH (F_ROH) and the genomic relationship matrix (F_GRM). A total of 2,616,890 pedigree records were available. Of these records, 6,371 genotyped animals from three purebred turkey (Meleagris gallopavo) lines between 2013 and 2019 were available, and these were obtained using a dense single nucleotide polymorphism array (56,452 SNPs). The overall mean length of detected ROH was 2.87 ± 0.29 Mb with a mean number of 84.87 ± 8.79 ROH per animal. Short ROH with lengths of 1 to 2 Mb long were the most abundant throughout the genome. Mean ROH coverage differed greatly between chromosomes and lines. Considering inbreeding coefficient means across all lines, genomic derived inbreeding coefficients (F_ROH = 0.27; F_GRM = 0.32) were higher than coefficients estimated from pedigree records (F_PED = 0.14). Correlations between F_ROH and F_PED, F_ROH and F_GRM, and F_PED and F_GRM ranged between 0.19 to 0.31, 0.68 to 0.73, and 0.17 to 0.30, respectively. Additionally, correlations between F_ROH from different lengths and F_PED substantially increased with ROH length from -0.06 to 0.33. Results of the current research, including the distribution of ROH throughout the genome and ROH-derived inbreeding estimates, can provide a more comprehensive description of inbreeding in the turkey genome. This knowledge can be used to evaluate genetic diversity, a requirement for genetic improvement, and develop methods to minimize inbreeding in turkey breeding programs.

Genetic Diversity and Identification of Homozygosity-Rich Genomic Regions in Seven Italian Heritage Turkey (Meleagris gallopavo) Breeds

Italian autochthonous turkey breeds are an important reservoir of genetic biodiversity that should be maintained with an in vivo approach. The aim of this study, part of the TuBAvI national project on biodiversity, was to use run of homozygosity (ROH), together with others statistical approaches (e.g., Wright's F-statistics, principal component analysis, ADMIXTURE analysis), to investigate the genomic diversity in several heritage turkey breeds. We performed a genome-wide characterization of ROH-rich regions in seven autochthonous turkey breeds, i.e., Brianzolo (Brzl), Bronzato Comune Italiano (BrCI), Bronzato dei Colli Euganei (CoEu), Parma e Piacenza (PrPc), Nero d'Italia (NeIt), Ermellinato di Rovigo (ErRo) and Romagnolo (Roma). ROHs were detected based on a 650K SNP genotyping. ROH_islands were identified as homozygous ROH regions shared by at least 75% of birds (within breed). Annotation of genes was performed with DAVID. The admixture analyses revealed that six breeds are unique populations while the Roma breed consists in an admixture of founder populations. Effective population size estimated on genomic data shows a numeric contraction. ROH_islands harbour genes that may be interesting for target selection in commercial populations also. Among them the PTGS2 and PLA2G4A genes on chr10 were related to reproduction efficiency. This is the first study mapping genetic variation in autochthonous turkey populations. Breeds were genetically different among them, with the Roma breed proving to be a mixture of the other breeds. The ROH_islands identified harboured genes peculiar to the selection that occurred in heritage breeds. Finally, this study releases previously undisclosed information on existing genetic variation in the turkey species.

Characterization of the hypothalamo-pituitary-gonadal axis in low and high egg producing turkey hens

Variation in egg production exists in commercial turkey hens, with low egg producing hens (LEPH) costing more per egg produced than high egg producing hens (HEPH). Egg production correlates with ovulation frequency, which is governed by the hypothalamic-pituitary-gonadal (HPG) axis. Ovulation is stimulated by a preovulatory surge (PS) of progesterone and luteinizing hormone, triggered by gonadotropin releasing hormone release and inhibited by gonadotropin inhibiting hormone. Differences between LEPH and HEPH were characterized by determining HPG axis plasma hormone profiles and mRNA levels for key genes, both outside and inside of the PS (n = 3 per group). Data were analyzed with a 2-way ANOVA using the mixed models procedure of SAS. In the HPG axis, plasma progesterone levels were not affected by egg production level but were elevated during the PS. In contrast, plasma estradiol levels were higher in HEPH than in LEPH but were not associated with the PS. LEPH exhibited decreased gene expression associated with ovulation stimulation and increased gene expression associated with ovulation inhibition in the hypothalamus and pituitary. In ovarian follicle cells, LEPH displayed decreased gene expression associated with progesterone, androgen, and estradiol production in the F1 follicle granulosa cells, F5 theca interna cells, and small white follicle cells, respectively. Different degrees of stimulation and inhibition within all tissues of the HPG axis were noted between LEPH and HEPH turkey hens, with HEPH showing higher expression of genes related to ovulation and steroidogenesis.

Research Note: The effect of selection for 16-week body weight on turkey serum metabolome

The phenotype of modern commercial turkeys is substantially different than that of unselected, heritage turkey lines. These phenotypic changes have arisen from alterations in the genome/transcriptome, as well as the influence of many external factors on growth performance including nutrition, environment, and management. To investigate the phenotypic changes resulting from genetic selection for increased body weight, The Ohio State University maintains 2 unique genetic turkey lines: the randombred control (RBC2) line, which is comprised of genetics from 1960 era commercial turkeys and has been maintained without conscious selection for any trait; and the F line, which was originally selected from the RBC2 line and has been selected for increased 16 wk body weight for over 50 generations. This study used broad-spectrum mass-spectrometry profiling techniques to identify and quantify differences in the metabolome of the serum of F and RBC2 turkey lines. Serum samples from both F and RBC2 turkeys were subject to quantitative time of flight liquid chromatography tandem mass spectrometry analyses. Principle component analyses showed distinct populations of metabolites in the F vs. RBC2 serum, suggesting that increased body weight is associated with the accumulation of several metabolites. Comparing the spectral features to online databases resulted in the selection of 104 features with potentially identifiable chemical structures. Of these 104 features, 25 were found at higher levels in the serum of the RBC2 line turkeys, while 79 were found at a greater abundance in the F line turkeys. A more detailed analysis of these 104 features allowed for the putative identification of 49 compounds, which were clustered into 6 functional groups: 1) energy metabolism; 2) vitamins; 3) hormones and signaling molecules; 4) lipid derivatives, fatty acid metabolites, and membrane components; 5) amino acid/protein metabolism; and 6) microbial metabolites. Further validation and experimentation is needed to confirm the identity of these metabolites and understand their biological relevance and association with selection for increased body weight.

Genetic parameters for clutch and broodiness traits in turkeys (Meleagris Gallopavo) and their relationship with body weight and egg production

The objective of this study was to estimate phenotypic and genetic parameters for clutch and broodiness (BR) traits in turkeys and their relationship with body weight and egg production. Data on dam line hens was available and included: body weight at 18 wk of age (BW18), body weight at lighting (BWL, 29 to 33 wk), age at first egg (AFE), egg number (EN), rate of lay (RL), clutch length (CL), maximum clutch length (MCL), pause length (PL), maximum PL (MPL) and BR. BR was defined as the average number of consecutive pause days between clutches that was higher than the average PL per hen. Heritability estimates for BW18 and BWL were 0.50 and 0.53, respectively. The heritability for egg production, clutch, and pause traits varied from low (MPL = 0.15; BR = 0.15) to moderate (AFE = 0.22; EN = 0.28; RL = 0.29; CL = 0.21; MCL = 0.27; PL = 0.25). Genetic correlations were negative between body weight traits and EN (rg (BW18, EN) = -0.27; rg(BWL, EN) = -0.33) and CL (rg(BW18, CL) = -0.40; rg(BWL, CL) = -0.33). BR was negatively genetically correlated with EN (rg(BR, EN) = -0.85) and CL (rg(BR, CL) = -0.30), and positively genetically correlated with PL (rg(BR, PL) = 0.93) and AFE (rg(BR, AFE) = 0.21). EN had a positive (0.73) and a negative (-0.84) genetic correlation with CL and PL, respectively. Overall, the results of this study confirmed the negative (unfavorable) correlations between egg production and body weight. Despite unfavorable genetic and phenotypic correlations between egg production traits and those relating to BR, the inclusion of BR in a selection program through incorporation of clutch length traits and pause length traits is feasible. Integration of either clutch length traits or pause length traits in a selection index is likely to increase egg number while decreasing broodiness.

Unexpected consequences of genetic selection in broilers and turkeys: problems and solutions

1. Genetic theory leads to the expectation that unexpected consequences of genetic selection for production traits will inevitably occur and that these changes are likely to be undesirable. 2. Both artificial selection for production efficiency and "natural" selection for adaptation to the production environment result in selection sweeps that increase the frequencies of rare recessive alleles that have a negative effect on fitness. 3. Fitness is broadly defined as any trait that affects the ability to survive, reproduce and contribute to the next generation, such as musculoskeletal disease in growing broiler chickens and multiple ovulation in adult broiler parents. 4. Welfare concerns about the negative effects of genetic selection on bird welfare are sometimes exaggerated but are nevertheless real. Breeders have paid increasing attention to these traits over several decades and have demonstrated improvement in pedigree flocks. There is an urgent need to monitor changes in commercial flocks to ensure that genetic change is accompanied by improvements in that target population. 5. New technologies for trait measurement, whole genome selection and targeted genetic modification hold out the promise of efficient and rapid improvement of welfare traits in future breeding of broiler chickens and turkeys. The potential of targeted genetic modification for enhancing welfare traits is considerable, but the goal of achieving public acceptability for the progeny of transgenic poultry will be politically challenging.

Feed restriction ameliorates metabolic dysregulation and improves reproductive performance of meat-type country chickens

Restricted feed intake improves egg production in Cornish×Plymouth Rock (broiler) hens. Red-feather (RF) and Black-feather (BF) chickens are 2 local strains of non-broiler meat-type chickens whose egg production has declined with continued selection for meat yield, and which are unstudied regarding restricted feeding and egg-laying improvement. Sixteen week old RF and BF pullets were either fed ad libitum (AL) or restricted to 85% AL intake (R). At 35wk and 50wk R-hens showed improved egg production and less abnormal ovarian morphology than AL-hens. Obesity, hepatic steatosis, lipotoxic change to plasma lipids, and systemic inflammation induced by AL feeding in RF and BF hens were similar to those observed previously in AL-broiler hens. Egg production was negatively correlated to body weight, fractional abdominal fat weight and plasma NEFA concentrations in AL hens (P<0.05). AL-hen hierarchical follicles accumulated ceramide and increased interleukin-1β production (P<0.05) in conjunction with increased granulosa cell apoptosis, follicle atresia, ovarian regression, and reduced plasma 17β-estradiol concentrations (P<0.05). The present outcomes from non-broiler but nevertheless meat-type country chicken strains indicate that selection for rapid growth and increased meat yield fundamentally changes energy metabolism in a way that renders hens highly susceptible to reproductive impairment from lipid dysregulation and pro-inflammatory signaling rather than impaired resource allocation per se.

Feed restriction delays developmental fast skeletal muscle myosin heavy chain isoforms in turkey poults selected for differential growth

Genetic selection has been very successful at significantly increasing BW and breast muscle proportion in commercial broiler and turkey strains. The mechanisms of breast muscle growth in poultry and the interactive effects of nutritional status and selection are not fully understood. The hypothesis underlying the current study is that feed restriction, simply as a vehicle for controlling early growth, would delay the temporal expression pattern of neonatal (nMyHC) and adult (aMyHC) fast skeletal muscle myosin heavy chain (MyHC) isoforms in the pectoralis major muscle of turkey poults. The poultry growth model used to evaluate this hypothesis consisted of a randombred control turkey line (RBC2) that represents commercial turkeys of the 1960s and a line developed from the RBC2 by selection for BW at 16 wk of age (F line). The F line has significantly heavier breast muscles than the RBC2 concomitant with increased BW, but the proportion of breast muscle relative to BW is similar. A quantitative indirect ELISA using fast skeletal MyHC isoform specific monoclonal antibodies revealed no significant line differences in the temporal expression of posthatch fast skeletal muscle MyHC in ad libitum fed poults. Feed restriction, however, altered the temporal expression patterns of nMyHC and aMyHC in both F line and RBC2 poults compared with the poults fed ad libitum.

Genetics of behavioural adaptation of livestock to farming conditions

Behavioural adaptation of farm animals to environmental changes contributes to high levels of production under a wide range of farming conditions, from highly controlled indoor systems to harsh outdoor systems. The genetic variation in livestock behaviour is considerable. Animals and genotypes with a larger behavioural capacity for adaptation may cope more readily with varying farming conditions than those with a lower capacity for adaptation. This capacity should be exploited when the aim is to use a limited number of species extensively across the world. The genetics of behavioural traits is understood to some extent, but it is seldom accounted for in breeding programmes. This review summarizes the estimates of genetic parameters for behavioural traits in cattle, pigs, poultry and fish. On the basis of the major studies performed in the last two decades, we focus the review on traits of common interest in the four species. These concern the behavioural responses to both acute and chronic stressors in the physical environment (feed, temperature, etc.) and those in the social environment (other group members, progeny, humans). The genetic strategies used to improve the behavioural capacity for adaptation of animals differ between species. There is a greater emphasis on responses to acute environmental stress in fish and birds, and on responses to chronic social stress in mammals.

Multivariate evaluation of 1-dimensional sarcoplasmic protein profile patterns of turkey breast muscle during early post-hatch development

Proteins are the main participants in metabolic pathways. However, the analysis of protein abundance patterns associated with those pathways is complicated by the large number of proteins involved. In this study, the objective was to present the application of principal component analysis (PCA) to permit the visualization of developmental proteomic patterns of sarcoplasmic proteins found in breast muscle. Different turkey genotypes and nutritional regimens were used to potentially increase the variability within the sarcoplasmic protein profile. Sarcoplasmic protein fractions from turkey breast muscle samples were collected at 6 ages between 7 to 24 d. Breast muscle samples were collected from 2 distinctly different turkey lines. The poults within each line were either ad libitum or restrict fed. Proteomic PCA plots showed a visual developmental pattern from 7 until 17 d. Multivariate ANOVA highlighted the effect of time point and feeding regimen among profile patterns. The use of different genotypes and feeding regimens influenced variability, which was measured by mean Euclidean distances and ellipses of the PCA plots. These treatment effects, however, did not mask the developmental patterns. After 17 d, the proteomic patterns converged, suggesting that a level of biological stability was achieved regardless of the genotype or treatment. The developmental pattern obtained by the PCA methodology can aid in the planning of more efficient experimental designs so the developmental stage of individuals can be more accurately assessed.

Genetic analysis of survival and fitness in turkeys with multiple-trait animal models

Genetic parameters for production, survival, and structural fitness traits recorded in pedigreed turkey sire and dam parental lines from a nucleus breeding program were estimated with multiple-trait animal models. Survival and conformation traits were scored in binary terms of health, where 0 = died or affected, and 1 = survived or healthy. Walking ability at 20 wk was subjectively scored from 1 (poor) to 6 (excellent). Body weights and egg production displayed moderate heritability (h(2) = 0.18 to 0.35). Early survival (to 3 wk) displayed low heritability (h(2) = 0.02 and 0.04 for the dam and sire lines, respectively). Late survival (3 to 23 wk) and longevity (age at death or cull) had low to moderate heritability (h(2) = 0.12 to 0.14). Walking ability had moderate heritability (h(2) = 0.26, 0.25). Leg structure health displayed low heritability (h(2) = 0.08), as did hip structure, foot, and skin health (h(2) ≤ 0.02). Crop health displayed moderate heritability (h(2) = 0.12). Walking ability, hip and leg structures, footpad, and breast skin health had negative genetic correlations with BW (r(G) = -0.50 to -0.23). Egg production had moderate positive genetic correlation with late survival (r(G) = 0.61). Genetic correlations between early and late survival were close to zero (r(G) = 0.10 and 0.03 for the dam and sire lines, respectively). Walking ability had high positive genetic correlations with late survival, longevity, hip structure, and leg structure in both lines (r(G) = 0.51 to 0.91). These genetic parameters indicate that unchecked selection for growth could decrease survival, walking ability, and hip, leg, footpad, and skin health in turkeys. However, index selection should be effective at improving fitness, survival, and growth simultaneously in commercial turkey lines. Walking ability should be a good indicator trait for selection to improve overall late survival and hip and leg health in turkeys.

The influence of age on maternal inheritance of breast muscle morphology in turkeys

It was apparent in previous studies at our institution using turkeys that measurements of muscle fibers and extracellular spacing were not adequate to explain what was observed in entire pectoralis major muscle sections. A rating system was developed in which muscle sections were rated from 1 (little extracellular matrix and indistinct muscle fibers) to 5 (large extracellular space and distinct muscle fibers). Maternal inheritance was observed at 16 wk of age but not at 8 or 20 wk of age. The purpose of the current study was to determine the effect of age on maternal inheritance. A line (F) selected long-term for increased 16-wk BW, its randombred control (RBC2), and reciprocal crosses between them were compared from 8 through 18 wk of age. Samples of pectoralis major muscle were obtained in a manner to avoid muscle contraction. After being fixed and cross-sectioned, the muscle samples were stained with hematoxylin and eosin and rated by 4 individuals. No significant difference among genetic groups was observed in scores at 8 wk of age. At 10 wk of age, the F line had lower scores than the other genetic groups. Maternal inheritance was suggested at 12 wk of age. The scores for RBC2 were higher than those for F, whereas the F x RBC2 cross did not differ from the pure RBC2 line score at this age. Although the RBC2 x F scores were higher than the pure F-line scores at 12 wk, they were lower than those of the F x RBC2 crosses. From 14 through 18 wk of age, the scores for the RBC2 line were higher than those for the F line and the maternal inheritance was absolute because the value for the individual crosses did not differ from that of the maternal parent. Based on the results, the type of mating used to produce commercial turkeys would have a major effect on breast muscle morphology from 12 through 18 wk of age.