Diet selection in the Coyote Canis latrans

The Coyote (Canis latrans) is one of the most studied species in North America with at least 445 papers on its diet alone. While this research has yielded excellent reviews of what coyotes eat, it has been inadequate to draw deeper conclusions because no synthesis to date has considered prey availability. We accounted for prey availability by investigating the prey selection of coyotes across its distribution using the traditional Jacobs' index method, as well as the new iterative preference averaging (IPA) method on scats and biomass. We found that coyotes selected for Dall's Sheep (Ovis dalli), White-tailed Deer (Odocoileus virginianus), Eastern Cottontail Rabbit (Sylvilagus floridanus), and California Vole (Microtus californicus), which yielded a predator-to-preferred prey mass ratio of 1:2. We also found that coyotes avoided preying on other small mammals, including carnivorans and arboreal species. There was strong concordance between the traditional and IPA method on scats, but this pattern was weakened when biomass was considered. General linear models revealed that coyotes preferred to prey upon larger species that were riskier to hunt, reflecting their ability to hunt in groups, and were least likely to hunt solitary species. Coyotes increasingly selected Mule Deer (O. hemionus) and Snowshoe Hare (Lepus americanus) at higher latitudes, whereas Black-tailed Jackrabbit (L. californicus) were increasingly selected toward the tropics. Mule Deer were increasingly selected at higher coyote densities, while Black-tailed Jackrabbit were increasingly avoided at higher coyote densities. Coyote predation could constrain the realized niche of prey species at the distributional limits of the predator through their increased efficiency of predation reflected in increased prey selection values. These results are integral to improved understandings of Coyote ecology and can inform predictive analyses allowing for spatial variation, which ultimately will lead to better understandings about the ecological role of the coyote across different ecosystems.

Jaguar’s Predation and Human Shield, a Tapir Story

Despite the risks associated, some species choose to shield behind a predator to decrease predation risk by another predator. In this study, we demonstrate how Baird’s tapirs (Tapirus bairdii) use humans as a “shield” to reduce the risk of being preyed upon by jaguars (Panthera onca). We collected georeferenced photographic records of 23 tapirs (seven of them injured) sighted near human settlements (0 to 5 km) in the Calakmul region of Mexico from 2008 to 2019. Using multidimensional scale analysis, we determined which possible factors (tapir health status, injuries, distance to the settlement, as well as seasonality) are related to the decision of tapirs to approach human settlements. To support our claims of jaguars’ attacks, we described the pattern of injuries believed to have been inflicted by jaguars on tapirs, and we analysed photographs and videos of species of the genus Panthera attacking larger prey than themselves to establish a pattern of injuries and compare it to the injuries observed on tapirs. Our study shows that tapir sightings near human settlements are related to health deterioration, injuries by jaguars and seasonality. The injuries found on tapirs are similar to those caused by other big cats on large prey, providing strong support for jaguar-inflicted wounds. Further studies should investigate whether the increasing human presence in different habitats in the Neotropical region could be influencing the behaviour and distribution of prey and predators.

Dietary similarity among jaguars (Panthera onca) in a high-density population

Prey remains found in carnivore scats provide generalised dietary profiles of sampled populations. The profile may be biased if individual diets differ and some individuals are over- or under-represented in the sample. Quantifying individual contributions allows us to recognise these potential biases and better interpret generalised profiles. Knowing the dietary differences or similarity between individuals can help us to understand selection pressures and identify drivers of distribution and abundance. Using the results of individual faecal genotyping, we re-interpreted our previously-published generalised dietary profile of an elusive, neotropical felid, the jaguar (Panthera onca; Foster et al. (2010)). We quantified individual sample sizes, assessed whether the generalised profile was influenced by the inclusion of scats originating from the same individual and prey carcass (pseudo-replication), and quantified the distribution of prey species among individuals. From an original sample of 322 jaguar scats from a high-density jaguar population in Belize, we identified 206 prey items (individual prey animals) in 176 independent scats representing 32 jaguars (26 males, 3 females, 3 unknown sex). The influence of pseudo-replication in the original dietary profile was minimal. The majority of scats (94%) came from male jaguars. Eight males accounted for two-thirds of the prey items, while 24 jaguars each contributed <5% of the prey items. With few exceptions, the jaguars followed the same broad diet, a 2:1:1 ratio of nine-banded armadillos (Dasypus noveminctus), other vertebrates ≤10kg, and ungulates, primarily peccaries (Tayassu pecari and Pecari tajacu). We noted prey switching between wild and domestic ungulates for individuals spanning protected forests and farmland. This first scat-based study exploring individual variation in jaguar diet highlights the importance of armadillos and peccaries for male jaguars in Belize, the need for research on their roles in supporting high-density jaguar populations, and the need for more data on female diet from across the jaguar range.

Disappearance of an ecosystem engineer, the white-lipped peccary (Tayassu pecari), leads to density compensation and ecological release

Given the rate of biodiversity loss, there is an urgent need to understand community-level responses to extirpation events, with two prevailing hypotheses. On one hand, the loss of an apex predator leads to an increase in primary prey species, triggering a trophic cascade of other changes within the community, while density compensation and ecological release can occur because of reduced competition for resources and absence of direct aggression. White-lipped peccary (Tayassu pecari—WLP), a species that typically co-occurs with collared peccary (Pecari tajacu), undergo major population crashes—often taking 20 to 30-years for populations to recover. Using a temporally replicated camera trapping dataset, in both a pre- and post- WLP crash, we explore how WLP disappearance alters the structure of a Neotropical vertebrate community with findings indicative of density compensation. White-lipped peccary were the most frequently detected terrestrial mammal in the 2006–2007 pre-population crash period but were undetected during the 2019 post-crash survey. Panthera onca (jaguar) camera trap encounter rates declined by 63% following the WLP crash, while collared peccary, puma (Puma concolor), red-brocket deer (Mazama americana) and short-eared dog (Atelocynus microtis) all displayed greater encounter rates (490%, 150%, 280%, and 500% respectively), and increased in rank-abundance. Absence of WLP was correlated with ecological release changes in habitat-use for six species, with the greatest increase in use in the preferred floodplain habitat of the WLP. Surprisingly, community-weighted mean trait distributions (body size, feeding guild and nocturnality) did not change, suggesting functional redundancy in diverse tropical mammal assemblages.

A method to predict overall food preferences

Most natural ecosystems contain animals feeding on many different types of food, but it is difficult to predict what will be eaten when food availabilities change. We present a method that estimates food preference over many study sites, even when number of food types vary widely from site to site. Sampling variation is estimated using bootstrapping. We test the precision and accuracy of this method using computer simulations that show the effects of overall number of food types, number of sites, and proportion of missing prey items per site. Accuracy is greater with fewer missing prey types, more prey types and more sites, and is affected by the number of sites more than the number of prey types. We present a case study using lion (Panthera leo) feeding data and show that preference vs prey size follows a bell-curve. Using just two estimated parameters, this curve can be used as a general way to describe predator feeding patterns. Our method can be used to: test hypotheses about what factors affect prey selection, predict preferences in new sites, and estimate overall prey consumed in new sites.

Jaguars in the matrix: population, prey abundance and land-cover change in a fragmented landscape in western Mexico

Habitat fragmentation threatens biodiversity worldwide, particularly affecting large-bodied species that require vast territories and move across long distances, including most large felids. The jaguar Panthera onca has lost more than half of its habitat throughout its range and its subpopulations are becoming isolated, making them susceptible to local extinction. Knowledge about the status of its subpopulations in highly fragmented environments is lacking but urgently needed. Using camera traps during 2019–2020, we estimated number of individuals, age classes and sex ratio, occupancy, relative abundance and density of jaguars in Nayarit, western Mexico. We also determined the relative abundance of potential prey and estimated the land-cover change rate during 1999–2019, using GIS. We found that a resident subpopulation of five adult females, two adult males and one cub, at a high density (5.3 individuals/100 km2), is supported by at least 14 wild prey species. Natural habitat in the area is rapidly decreasing because of expanding agriculture and shrimp farming: agricultural areas increased from 39 to 50% and mangroves decreased from 35 to 26% of the study area over 20 years. The high jaguar population density and the diversity and relative abundance of remaining wild prey are remarkable, considering that natural habitat in the area is highly fragmented, shrinking rapidly and embedded in a matrix of human-dominated land-cover types. Effective conservation actions are needed urgently, including the protection of patches with native vegetation, reforestation to maintain connectivity between these patches, and the involvement of local communities.

Kill rates and associated ecological factors for an apex predator

Kill rates and functional responses are fundamental to the study of predator ecology and the understanding of predatory-prey dynamics. As the most widely distributed apex predator in the western hemisphere, pumas (Puma concolor) have been well studied, yet a synthesis of their kill rates is currently lacking. We reviewed the literature and compiled data on sex- and age-specific kill rate estimates of pumas on ungulates, and conducted analyses aimed at understanding ecological factors explaining the observed spatial variation. Kill rate studies on pumas, while numerous, were primarily conducted in Temperate Conifer Forests (< 10% of puma range), revealing a dearth of knowledge across much of their range, especially from tropical and subtropical habitats. Across studies, kill rates in ungulates/week were highest for adult females with kitten(s) (1.24 ± 0.41 ungulates/week) but did not vary significantly between adult males (0.84 ± 0.18) and solitary adult females (0.99 ± 0.26). Kill rates in kg/day differed only marginally among reproductive classes. Kill rates of adult pumas increased with ungulate density, particularly for males. Ungulate species richness had a weak negative association with adult male kill rates. Neither scavenger richness, puma density, the proportion of non-ungulate prey in the diet, nor regional human population density had a significant effect on ungulate kill rates, but additional studies and standardization would provide further insights. Our results had a strong temperate-ecosystem bias highlighting the need for further research across the diverse biomes pumas occupy to fully interpret kill rates for the species. Data from more populations would also allow for multivariate analyses providing deeper inference into the ecological and behavioural factors driving kill rates and functional responses of pumas, and apex predators in general.

An unusually big challenge: first record of Leopardus guigna preying upon Pudu puda

Notwithstanding the very small size of this felid, Leopardus guigna is considered a top predator within its habitat. Its diet consists of small mammals, birds and reptiles, according to the available literature, but its predatory behaviour has rarely been observed directly. Here we report the first record of L. guigna preying upon Pudu puda in southern Chile. Photographic material has been obtained in a citizen science project and indicates a significant expansion of the cat’s prey size range. It also adds valuable knowledge to conservation efforts focusing on the near threatened cervid.

Dog predation by jaguars in a tourist town on the Mexican Caribbean

Invasion of humans and dogs into the jaguars’ habitat opens the way for future negative events. Dog predation by jaguars has only been recorded anecdotally, despite the high risk of pathogen transmission and the potential conflict due to pet predation. In this study, we document jaguar attacks on dogs in Mahahual, Quintana Roo, Mexico, a tourist town in the Mexican Caribbean. In addition, we describe an initiative designed to prevent jaguar persecution by constructing night houses for dogs at the most recent attack sites. A total of 20 attacks were recorded in the last nine years, most of them fatal (60%) on medium-sized dogs (70%), at night (95%) and during the dry season (65%). Half of the attacks occurred in the north of Mahahual´s coastline and the other half in the south. Attacks in the south were concentrated between 0 to 10 km away from the village, while in the north they were dispersed over distances between 0 and &gt; 30 km. Thirty-eight night houses were constructed covering almost 45 km of the 135 km of Mahahual’s coastline. Further research is required to understand the importance of dogs in the jaguar diet and the impact of dog predation on the health and disease ecology of jaguar populations.

Jaguar Panthera onca (Linnaeus, 1758) (Mammalia: Carnivora: Felidae) presumably feeding on Flathead Catfish Pylodictis olivaris (Rafinesque, 1818) (Actinopterygii: Siluriformes: Ictaluridae) at Aros and Yaqui rivers, Sonora, Mexico

Despite the abundant literature on the feeding preferences of the Jaguar Panthera onca throughout its range in America, few studies report fish consumed as prey by Jaguars. This paper reports two accounts of Jaguars presumably feeding on the introduced Flathead Catfish Pylodictis olivaris at the Aros and Yaqui rivers in Sonora, northwestern Mexico.

Environmental and anthropogenic factors synergistically affect space use of jaguars

Large terrestrial carnivores have undergone some of the largest population declines and range reductions of any species, which is of concern as they can have large effects on ecosystem dynamics and function.^1-4 The jaguar (Panthera onca) is the apex predator throughout the majority of the Neotropics; however, its distribution has been reduced by >50% and it survives in increasingly isolated populations.⁵ Consequently, the range-wide management of the jaguar depends upon maintaining core populations connected through multi-national, transboundary cooperation, which requires understanding the movement ecology and space use of jaguars throughout their range.^6-8 Using GPS telemetry data for 111 jaguars from 13 ecoregions within the four biomes that constitute the majority of jaguar habitat, we examined the landscape-level environmental and anthropogenic factors related to jaguar home range size and movement parameters. Home range size decreased with increasing net productivity and forest cover and increased with increasing road density. Speed decreased with increasing forest cover with no sexual differences, while males had more directional movements, but tortuosity in movements was not related to any landscape factors. We demonstrated a synergistic relationship between landscape-scale environmental and anthropogenic factors and jaguars' spatial needs, which has applications to the conservation strategy for the species throughout the Neotropics. Using large-scale collaboration, we overcame limitations from small sample sizes typical in large carnivore research to provide a mechanism to evaluate habitat quality for jaguars and an inferential modeling framework adaptable to the conservation of other large terrestrial carnivores.

Detection of Ehrlichia sp. in Amblyomma sculptum parasitizing horses from Brazilian Pantanal wetland

Bacteria of the genus Ehrlichia are transmitted by ticks and also are an important cause of infection in wild and domestic mammals. Infection with Ehrlichia spp. has been reported in horses, especially in the USA, Nicaragua and Brazil. In this study, we report the parasitism by Amblyomma sculptum, Rhipicephalus microplus and Dermacentor nitens ticks in horses from a ranch located in south Pantanal wetland. Molecular and serological analyzes to determine infection by Ehrlichia spp. in horses and their respective ticks were carried out. A total of 12 horses were submitted to blood collection to investigate antibodies by indirect immunofluorescence assay (IFA) using Ehrlichia canis crude antigens and to be tested by polymerase chain reaction (PCR) in order to amplify fragments of the 16S rRNA, dsb, groEL and sodB gene of Ehrlichia spp. A total of 164 tick specimens were removed from horses, stored in isopropanol and later identified as D. nitens, A. sculptum and R. microplus. DNA from ticks were extracted and subjected to the same PCR assays to detect Ehrlichia spp. Anti-Ehrlichia spp. antibodies were detected in five/12 (41.7 %) horses by IFA, with antibody titers ranging from 40 to 160. All horse DNA samples were negative for the 16S rRNA, dsb, groEL and sodB of Ehrlichia spp. One A. sculptum female was positive to all target genes of Ehrlichia. This tick was parasitizing an Ehrlichia-seropositive horse with antibody titer of 80. Nucleotide sequences of 16S rRNA, dsb, groEL and sodB genes showed close relationship with different strains of Ehrlichia detected in wild mammals, Amblyomma ticks and horses from Brazil and Argentina. Detection of anti-Ehrlichia sp. antibodies suggests that horses have been exposed to an ehrlichial agent in the Pantanal. Future studies on Ehrlichia infection should be carried out to better elucidate and to bring new information about equine ehrlichiosis, since these animals are important hosts of ticks in the Brazilian Pantanal wetlands.

First documented predation of a Baird’s tapir by a jaguar in the Calakmul region, Mexico

To date, records of predation on Baird’s tapir (Tapirus bairdii) by jaguars (Panthera onca) were anecdotal and did not allow for differentiation regarding whether the animal had been preyed upon or scavenged. Here, we present the first documented event of predation on a Baird’s tapir by a jaguar in the Calakmul region, Campeche, Mexico. In August 2017, we observed a jaguar eating a juvenile female Baird’s tapir; when we analysed the skull, we observed the characteristic “lethal bite” with which jaguars kill their prey by piercing the temporal and parietal bones with their canine teeth. Jaguars select to attack tapirs when they are most vulnerable (young or sick). Records of these type of events are important for understanding the food webs and ecology of these iconic Neotropical species that inhabit the Mesoamerican forests.

Reorganization of surviving mammal communities after the end-Pleistocene megafaunal extinction

Large mammals are at high risk of extinction globally. To understand the consequences of their demise for community assembly, we tracked community structure through the end-Pleistocene megafaunal extinction in North America. We decomposed the effects of biotic and abiotic factors by analyzing co-occurrence within the mutual ranges of species pairs. Although shifting climate drove an increase in niche overlap, co-occurrence decreased, signaling shifts in biotic interactions. Furthermore, the effect of abiotic factors on co-occurrence remained constant over time while the effect of biotic factors decreased. Biotic factors apparently played a key role in continental-scale community assembly before the extinctions. Specifically, large mammals likely promoted co-occurrence in the Pleistocene, and their loss contributed to the modern assembly pattern in which co-occurrence frequently falls below random expectations.

Wetlands are keystone habitats for jaguars in an intercontinental biodiversity hotspot

Agricultural development was the major contributor to South America's designation as the continent with the highest rates of forest loss from 2000-2012. As the apex predator in the Neotropics, jaguars (Panthera onca) are dependent on forest cover but the species' response to habitat fragmentation in heterogeneous agricultural landscapes has not been a subject of extensive research. We used occupancy as a measure of jaguar habitat use in Colombia's middle Magdalena River valley which, as part of the intercontinental Tumbes-Chocó-Magdalena biodiversity hotspot, is exceedingly fragmented by expanding cattle pastures and oil palm plantations. We used single-season occupancy models to analyze 9 months of data (2015-2016) from 70 camera trap sites. Given the middle Magdalena's status as a "jaguar corridor" and our possible violation of the occupancy models' demographic closure assumption, we interpreted our results as "probability of habitat use (Ψ)" by jaguars. We measured the associations between jaguar presence and coverage of forest, oil palm, and wetlands in radii buffers of 1, 3, and 5 km around each camera trap. Our camera traps recorded 77 jaguar detections at 25 of the camera trap sites (36%) during 15,305 trap nights. The probability of detecting jaguars, given their presence at a site, was 0.28 (0.03 SE). In the top-ranked model, jaguar habitat use was positively influenced by wetland coverage (β = 7.16, 3.20 SE) and negatively influenced by cattle pastures (β = -1.40, 0.63 SE), both in the 3 km buffers. We conclude that wetlands may serve as keystone habitats for jaguars in landscapes fragmented by cattle ranches and oil palm plantations. Greater focus on wetland preservation could facilitate jaguar persistence in one of the most important yet vulnerable areas of their distribution.

The importance of ecological memory for trophic rewilding as an ecosystem restoration approach

Increasing human pressure on strongly defaunated ecosystems is characteristic of the Anthropocene and calls for proactive restoration approaches that promote self-sustaining, functioning ecosystems. However, the suitability of novel restoration concepts such as trophic rewilding is still under discussion given fragmentary empirical data and limited theory development. Here, we develop a theoretical framework that integrates the concept of 'ecological memory' into trophic rewilding. The ecological memory of an ecosystem is defined as an ecosystem's accumulated abiotic and biotic material and information legacies from past dynamics. By summarising existing knowledge about the ecological effects of megafauna extinction and rewilding across a large range of spatial and temporal scales, we identify two key drivers of ecosystem responses to trophic rewilding: (i) impact potential of (re)introduced megafauna, and (ii) ecological memory characterising the focal ecosystem. The impact potential of (re)introduced megafauna species can be estimated from species properties such as lifetime per capita engineering capacity, population density, home range size and niche overlap with resident species. The importance of ecological memory characterising the focal ecosystem depends on (i) the absolute time since megafauna loss, (ii) the speed of abiotic and biotic turnover, (iii) the strength of species interactions characterising the focal ecosystem, and (iv) the compensatory capacity of surrounding source ecosystems. These properties related to the focal and surrounding ecosystems mediate material and information legacies (its ecological memory) and modulate the net ecosystem impact of (re)introduced megafauna species. We provide practical advice about how to quantify all these properties while highlighting the strong link between ecological memory and historically contingent ecosystem trajectories. With this newly established ecological memory-rewilding framework, we hope to guide future empirical studies that investigate the ecological effects of trophic rewilding and other ecosystem-restoration approaches. The proposed integrated conceptual framework should also assist managers and decision makers to anticipate the possible trajectories of ecosystem dynamics after restoration actions and to weigh plausible alternatives. This will help practitioners to develop adaptive management strategies for trophic rewilding that could facilitate sustainable management of functioning ecosystems in an increasingly human-dominated world.

Ecological and evolutionary legacy of megafauna extinctions

For hundreds of millions of years, large vertebrates (megafauna) have inhabited most of the ecosystems on our planet. During the late Quaternary, notably during the Late Pleistocene and the early Holocene, Earth experienced a rapid extinction of large, terrestrial vertebrates. While much attention has been paid to understanding the causes of this massive megafauna extinction, less attention has been given to understanding the impacts of loss of megafauna on other organisms with whom they interacted. In this review, we discuss how the loss of megafauna disrupted and reshaped ecological interactions, and explore the ecological consequences of the ongoing decline of large vertebrates. Numerous late Quaternary extinct species of predators, parasites, commensals and mutualistic partners were associated with megafauna and were probably lost due to their strict dependence upon them (co-extinctions). Moreover, many extant species have megafauna-adapted traits that provided evolutionary benefits under past megafauna-rich conditions, but are now of no or limited use (anachronisms). Morphological evolution and behavioural changes allowed some of these species partially to overcome the absence of megafauna. Although the extinction of megafauna led to a number of co-extinction events, several species that likely co-evolved with megafauna established new interactions with humans and their domestic animals. Species that were highly specialized in interactions with megafauna, such as large predators, specialized parasites, and large commensalists (e.g. scavengers, dung beetles), and could not adapt to new hosts or prey were more likely to die out. Partners that were less megafauna dependent persisted because of behavioural plasticity or by shifting their dependency to humans via domestication, facilitation or pathogen spill-over, or through interactions with domestic megafauna. We argue that the ongoing extinction of the extant megafauna in the Anthropocene will catalyse another wave of co-extinctions due to the enormous diversity of key ecological interactions and functional roles provided by the megafauna.

Jaguar interactions with pumas and prey at the northern edge of jaguars' range

We present the first study that evaluates jaguar-puma interactions in the arid lands of northern Mexico, where jaguars have their northernmost breeding population and both predators are persecuted for livestock depredation. We tested whether jaguars are the dominant species in this unique ecosystem, where: (1) pumas outnumber jaguars, (2) pumas are better adapted to arid environments, and (3) jaguars and pumas are of similar size. We analyzed four years of data with two approaches; a two species conditional occupancy model and an activity patterns analysis. We used camera location and prey presence as covariates for jaguar and puma detection and presence probabilities. We also explored overlap in activities of predators and prey. Where both species were detected, peccary presence was positively correlated with both jaguar and puma presence, whereas in areas where jaguars were detected but pumas were not, deer presence explained the probability of jaguar presence. We found that both predators were more likely to co-occur together than to be found independently, and so we rejected the hypothesis that jaguars were the dominant species in our study area. Predators were mainly nocturnal and their activity patterns overlapped by 60%. Jaguar, as compared with puma, overlapped more with deer and calves; puma overlapped with calves more than with other prey, suggesting a preference. We believe exploring predator relationships at different scales may help elucidate mechanisms that regulate their coexistence.

Predators, Prey and Habitat Structure: Can Key Conservation Areas and Early Signs of Population Collapse Be Detected in Neotropical Forests?

Tropical forests with a low human population and absence of large-scale deforestation provide unique opportunities to study successful conservation strategies, which should be based on adequate monitoring tools. This study explored the conservation status of a large predator, the jaguar, considered an indicator of the maintenance of how well ecological processes are maintained. We implemented an original integrative approach, exploring successive ecosystem status proxies, from habitats and responses to threats of predators and their prey, to canopy structure and forest biomass. Niche modeling allowed identification of more suitable habitats, significantly related to canopy height and forest biomass. Capture/recapture methods showed that jaguar density was higher in habitats identified as more suitable by the niche model. Surveys of ungulates, large rodents and birds also showed higher density where jaguars were more abundant. Although jaguar density does not allow early detection of overall vertebrate community collapse, a decrease in the abundance of large terrestrial birds was noted as good first evidence of disturbance. The most promising tool comes from easily acquired LiDAR data and radar images: a decrease in canopy roughness was closely associated with the disturbance of forests and associated decreasing vertebrate biomass. This mixed approach, focusing on an apex predator, ecological modeling and remote-sensing information, not only helps detect early population declines in large mammals, but is also useful to discuss the relevance of large predators as indicators and the efficiency of conservation measures. It can also be easily extrapolated and adapted in a timely manner, since important open-source data are increasingly available and relevant for large-scale and real-time monitoring of biodiversity.