Consistent effects of independent domestication events on the plant microbiota

The effect of plant domestication on plant-microbe interactions remains difficult to prove. In this study, we provide evidence of a domestication effect on the composition and abundance of the plant microbiota. We focused on the genus Phaseolus, which underwent four independent domestication events within two species (P. vulgaris and P. lunatus), providing multiple replicates of a process spanning thousands of years. We targeted Phaseolus seeds to identify a link between domesticated traits and bacterial community composition as Phaseolus seeds have been subject to large and consistent phenotypic changes during these independent domestication events. The seed bacterial communities of representative plant accessions from subpopulations descended from each domestication event were analyzed under controlled and field conditions. The results showed that independent domestication events led to similar seed bacterial community signatures in independently domesticated plant populations, which could be partially explained by selection for common domesticated plant phenotypes. Our results therefore provide evidence of a consistent effect of plant domestication on seed microbial community composition and abundance and offer avenues for applying knowledge of the impact of plant domestication on the plant microbiota to improve microbial applications in agriculture.

Intentional and unintentional selection during plant domestication: herbivore damage, plant defensive traits and nutritional quality of fruit and seed crops

Greater susceptibility to herbivory can arise as an effect of crop domestication. One proposed explanation is that defenses decreased intentionally or unintentionally during the domestication process, but evidence for this remains elusive. An alternative but nonexclusive explanation is presumed selection for higher nutritional quality. We used a metaanalytical approach to examine susceptibility to herbivores in fruit and seed crops and their wild relatives. Our analyses provide novel insights into the mechanisms of increased susceptibility by evaluating whether it can be attributed to either a reduction in herbivore defensive traits, including direct/indirect and constitutive/inducible defenses, or an increase in the nutritional content of crops. The results confirm higher herbivory and lower levels of all types of defenses in crops compared to wild relatives, although indirect defenses were more affected than direct ones. Contrary to expectations, nutritional quality was lower in crops than in wild relatives, which may enhance biomass loss to herbivores if they increase consumption to meet nutritional requirements. Our findings represent an important advance in our understanding of how changes in defensive and nutritional traits following domestication could influence, in combination or individually, crop susceptibility to herbivore attacks.

Domestication of Chili Pepper Has Altered Fruit Traits Affecting the Oviposition and Feeding Behavior of the Pepper Weevil

The pepper weevil, Anthonomus eugenii, Cano (Coleoptera: Curculionidae), is one of the most destructive pests of chili pepper. It causes extensive damage on varieties selected for consumption. However, the occurrence of this pest on wild and ornamental peppers remains unknown. We investigated the consequences of chili domestication on the feeding and oviposition of A. eugenii on fruits and flowers. We used plants of one wild accession, Bird Eye Pepper, five ornamental varieties (Pops Yellow, Black Pearl, Sedona Sun, Chilli Chilli, and Salsa Deep), and two domesticated varieties selected for consumption (Scotch Bonnet and Jalapeño). First, we characterized the plants according to their fruit and flower sizes, pericarp thickness, capsaicin level, fruit position, and flower color. Then, we evaluated the susceptibility of fruits and flowers to A. eugenii. Overall, domestication increased fruit and flower sizes and pericarp thickness, altered capsaicin levels, and altered fruit position and flower color. Weevils laid more eggs and caused more feeding damage on varieties selected for consumption than on wild and ornamental plants. Our results add to the growing literature on the consequences of crop domestication on herbivores. This knowledge could be integrated into breeding programs to select varieties resistant against the pepper weevil.

Mutualistic and antagonistic interactions differ in wild and domesticated papaya (Carica papaya) in its centre of origin

Shifts in phenotypes derived from the domestication syndromes impact plant performance but may also affect interactions with other species in the community (e.g. mutualists and antagonists). Moreover, plantations often differ from the natural conditions experienced by the wild relatives of cultivated plants, potentially altering the nature of ecological interactions. However, apart from herbivory, little is known about how domestication and cultivation practices (e.g. insecticide application) can modify multiple ecological interactions simultaneously in wild and domesticated plants. In four sites on the Yucatan Peninsula, we compared the diversity of mutualists (e.g. moths) and antagonists (e.g. viruses) in wild and domesticated plants of papaya. For each individual, we recorded floral visitors and rates of visitation at three time periods during the day. We recorded type and percentage of damage by antagonists in three leaves of all individuals. Finally, we explored if plant sex had an effect on the interaction with floral visitors. The main floral visitors were ants and Trigona species, whereas viruses caused the main type of foliar damage. Wild individuals had a higher diversity and visitation rate of floral visitors, and less foliar damage from antagonists. Wild male individuals were more visited, but we observed a similar amount and diversity of damage in both sexes. The time of day did not have an effect on diversity of floral visitors. Together, cultivation practices and domestication appear to have an effect on the reduction in diversity of floral visitors in domesticated papaya, as well as an increase in foliar damage.

Multigenerational experimental simulation of climate change on an economically important insect pest

Long-term multigenerational experimental simulations of climate change on insect pests of economically and socially important crops are crucial to anticipate challenges for feeding humanity in the not-so-far future. Mexican bean weevil Zabrotes subfasciatus, is a worldwide pest that attacks the common bean Phaseolus vulgaris seeds, in crops and storage. We designed a long term (i.e., over 10 generations), experimental simulation of climate change by increasing temperature and CO2 air concentration in controlled conditions according to model predictions for 2100. Higher temperature and CO2 concentrations favored pest's egg-to-adult development survival, even at high female fecundity. It also induced a reduction of fat storage and increase of protein content but did not alter body size. After 10 generations of simulation, genetic adaptation was detected for total lipid content only, however, other traits showed signs of such process. Future experimental designs and methods similar to ours, are key for studying long-term effects of climate change through multigenerational experimental designs.

Host density and parasitoid presence interact and shape the outcome of a tritrophic interaction on seeds of wild lima bean

The interaction between the seed beetle Zabrotes subfasciatus and its parasitoid Stenocorse bruchivora, was investigated on seeds of two populations of wild lima bean, Phaseolus lunatus. By manipulating the number of beetle larvae per seed and the presence of parasitoids, we determined how factors related to beetle larvae density, the seed in which they feed and the parasitoid, may interact and affect host and parasitoid survival. Results showed that an increase in larval beetle density had a negative impact on beetle performance. This effect cascaded up to parasitoids, high larval density strongly reduced parasitoid emergence. Also, parasitoid presence resulted in faster beetle development and lower female weight. An interactive effect between larval host density and parasitoid presence affected the number of insects that emerged from the seeds. Beetle performance was better in the bean population with the largest seeds, while parasitoid emergence was the lowest in these seeds. This study shows that the impact of parasitoids on seed beetles is contingent on the interaction between density-mediated (direct mortality) and trait-mediated (e.g. non-consumptive) effects. Indirect trait-mediated effects of natural enemies are likely prevalent across insect communities, understanding their role in driving host-parasitoid interactions can have important implications for biological control.

Differential Susceptibility of Wild and Cultivated Blueberries to an Invasive Frugivorous Pest

Highbush blueberry is a crop native to the northeast USA that has been domesticated for about 100 years. This study compared the susceptibility of wild and domesticated/cultivated highbush blueberries to an invasive frugivorous pest, the spotted wing drosophila (Drosophila suzukii). We hypothesized that: 1) cultivated fruits are preferred by D. suzukii for oviposition and better hosts for its offspring than wild fruits; and, 2) wild and cultivated fruits differ in physico-chemical traits. Fruits from wild and cultivated blueberries were collected from June through August of 2015 and 2016 from 10 to 12 sites in New Jersey (USA); with each site having wild and cultivated blueberries growing in close proximity. The preference and performance of D. suzukii on wild and cultivated blueberries were studied in choice and no-choice bioassays. In addition, we compared size, firmness, acidity (pH), total soluble solids (°Brix), and nutrient, phenolic, and anthocyanin content between wild and cultivated berries. In choice and no-choice bioassays, more eggs were oviposited in, and more flies emerged from, cultivated than wild blueberries. Cultivated fruits were 2x bigger, 47% firmer, 14% less acidic, and had lower °Brix, phenolic, and anthocyanin amounts per mass than wild fruits. Levels of potassium and boron were higher in cultivated fruits, while calcium, magnesium, and copper were higher in wild fruits. These results show that domestication and/or agronomic practices have made blueberries more susceptible to D. suzukii, which was associated with several physico-chemical changes in fruits. Our study documents the positive effects of crop domestication/cultivation on an invasive insect pest.