Genetic Approach on Sanionia uncinata (Hedw.) Loeske to Evaluate Representativeness of in situ Conservation Areas Among Protected and Neighboring Free Access Areas in Maritime Antarctica and Southern Patagonia

The Antarctic Specially Protected Areas (ASPAs) are zones with restricted access to protect outstanding environmental, scientific, historic, aesthetic, or wilderness values adopted inside the Antarctic Treaty System. Meanwhile, in southern Patagonia, conservation initiatives are implemented by the state of Chile and private entities. However, both are considered unrepresentative. Our work evaluates the representativeness of the in situ conservation through a genetic approach of the moss Sanionia uncinata (Hedw.) Loeske among protected and neighboring free access areas in Maritime Antarctica and southern Patagonia. We discuss observed presence with both current and reconstructed past potential niche distributions (11 and 6 ka BP) in the Fildes Peninsula on King George Island. Results showed occurrence of several spatially genetic subpopulations distributed inside and among ASPA and free access sites. Some free access sites showed a higher amount of polymorphism compared with ASPA, having ancestry in populations developed in those places since 6 ka BP. The different spatial and temporal hierarchies in the analysis suggest that places for conservation of this species in Maritime Antarctica are not well-represented, and that some free access areas should be considered. This work represents a powerful multidisciplinary approach and a great challenge for decision-makers to improve the management plans and the sustainable development in Antarctica.

The largest moss carpet transplant in Antarctica and its bryosphere cryptic biodiversity

As part of the reconstruction of the Brazilian Antarctic Station on King George Island, three areas of moss carpet were transplanted to minimize the impact of the new facilities on the local biodiversity. A total of 650 m² of moss carpet was transplanted to neighboring but previously uncolonized locations and has subsequently survived for the last 3 years. Antarctic moss carpets typically comprise low moss species diversity and are often monospecific. We investigated the cryptic biodiversity that was transplanted along with the carpets using a metabarcoding approach through high throughput sequencing. We targeted 16S rRNA for Bacteria and Archaea, ITS for Fungi and Viridiplantae and Cox1 for Metazoa. We detected DNA representing 263 taxa from five Kingdoms (Chromista, Fungi, Metazoa, Protista and Viridiplantae), two Domains (Archaea and Bacteria) and 33 Phyla associated with the carpet. This diversity included one Archaea, 189 Bacteria, 24 Chromista, 19 Fungi, eight Metazoa, seven Protista and 16 Viridiplantae. Bacteria was the most abundant, rich and diverse group, with Chromista second in diversity and richness. Metazoa was less diverse but second highest in dominance. This is the first study to attempt transplanting a significant area of moss carpet to minimize anthropogenic environmental damage in Antarctica and to use metabarcoding as a proxy to assess diversity associated with Antarctic moss carpets, further highlighting the importance of such habitats for other organisms and their importance for conservation.

At the crossroads of botanical collections and molecular genetics laboratory: a preliminary study of obtaining amplifiable DNA from moss herbarium material

Background

Research focused on extreme environments is often associated with difficulties in obtaining fresh plant material. Herbaria may provide great support as they house large collections of specimens from different parts of the world. Accordingly, there is also a growing interest in methods using herbarium specimens in molecular studies. Much of the literature on herbarium DNA is aimed to improve extraction and PCR amplification and is focused mostly on vascular plants. Here, I provide a brief study of DNA extraction efficiency from moss herbarium specimens, emphasizing the importance of herbaria as an invaluable source of material from hard-to-access geographical areas, such as the Antarctic region.

Methods

The presented study is based on herbarium collections of 25 moss species collected in the austral polar regions between 1979 and 2013. The majority of samples were obtained using the DNeasy Plant Mini Kit (Qiagen, Hilden, Germany). The remaining, smaller part was extracted using an adapted CTAB-based approach. The performance of DNA extraction methods in terms of PCR amplification success was measured by testing several DNA fragments of various size. Furthermore, in order to estimate of DNA fragmentation level, an automated on-chip electrophoresis system was used.

Results

Results reveal that DNA purity and the length of the target genetic region are the fundamental agents which drive the successful PCR reaction. Conversely, the DNA yield and specimen age seem to be less relevant. With this study, I present also an optimized CTAB-based approach which may effectively suppress inhibitors in the herbarium DNA. This method can be considered a cheaper alternative to column-based technology, particularly useful for dealing with a large number of samples. Results of this study confirmed previous reports and contribute to filling the existing gap in molecular analyses which involve the use of herbarium collections of mosses.