Research Priorities for Achieving Healthy Marine Ecosystems and Human Communities in a Changing Climate

What is conservation paleobiology? Tracking 20 years of research and development

Conservation paleobiology has coalesced over the last two decades since its formal coining, united by the goal of applying geohistorical records to inform the conservation, management, and restoration of biodiversity and ecosystem services. Yet, the field is still attempting to form an identity distinct from its academic roots. Here, we ask a deceptively simple question: What is conservation paleobiology? To track its development as a field, we synthesize complementary perspectives from a survey of the scientific community that is familiar with conservation paleobiology and a systematic literature review of publications that use the term. We present an overview of conservation paleobiology’s research scope and compare survey participants’ perceptions of what it is and what it should be as a field. We find that conservation paleobiologists use a variety of geohistorical data in their work, although research is typified by near-time records of marine molluscs and terrestrial mammals collected over local to regional spatial scales. Our results also confirm the field’s broad disciplinary basis: survey participants indicated that conservation paleobiology can incorporate information from a wide range of disciplines spanning conservation biology, ecology, historical ecology, paleontology, and archaeology. Finally, we show that conservation paleobiologists have yet to reach a consensus on how applied the field should be in practice. The survey revealed that many participants thought the field should be more applied but that most do not currently engage with conservation practice. Reflecting on how conservation paleobiology has developed over the last two decades, we discuss opportunities to promote community cohesion, strengthen collaborations within conservation science, and align training priorities with the field’s identity as it continues to crystallize.

Living in relationship with the Ocean to transform governance in the UN Ocean Decade

Humanity's relationship with the Ocean needs to be transformed to effectively address the multitude of governance crises facing the Ocean, including overfishing, climate change, pollution, and habitat destruction. Earth law, including Rights of Nature, provides a pathway to center humanity as a part of Nature and transform our relationship from one of dominion and separateness towards holism and mutual enhancement. Within the Earth law framework, an Ocean-centered approach views humanity as interconnected with the Ocean, recognizes societies' collective duty and reciprocal responsibility to protect and conserve the Ocean, and puts aside short-term gain to respect and protect future generations of all life and the Ocean's capacity to regenerate and sustain natural cycles. This Essay presents Ocean-centered governance as an approach to help achieve the 10 challenges for collective impact put forward as part of the UN Decade of Ocean Science for Sustainable Development and therefore living in a harmonious relationship with the Ocean.

B, Iquebal MA, Bhattacharya RC, Rai A, Kumar D. Genome wide identification of lncRNAs and circRNAs having regulatory role in fruit shelf life in health crop cucumber (Cucumis sativus L.)

Cucumber is an extremely perishable vegetable; however, under room conditions, the fruits become unfit for consumption 2-3 days after harvesting. One natural variant, DC-48 with an extended shelf-life was identified, fruits of which can be stored up to 10-15 days under room temperature. The genes involved in this economically important trait are regulated by non-coding RNAs. The study aims to identify the long non-coding RNAs (lncRNAs) and circular RNAs (circRNAs) by taking two contrasting genotypes, DC-48 and DC-83, at two different fruit developmental stages. The upper epidermis of the fruits was collected at 5 days and 10 days after pollination (DAP) for high throughput RNA sequencing. The differential expression analysis was performed to identify differentially expressed (DE) lncRNAs and circRNAs along with the network analysis of lncRNA, miRNA, circRNA, and mRNA interactions. A total of 97 DElncRNAs were identified where 18 were common under both the developmental stages (8 down regulated and 10 upregulated). Based on the back-spliced reads, 238 circRNAs were found to be distributed uniformly throughout the cucumber genomes with the highest numbers (71) in chromosome 4. The majority of the circRNAs (49%) were exonic in origin followed by inter-genic (47%) and intronic (4%) origin. The genes related to fruit firmness, namely, polygalacturonase, expansin, pectate lyase, and xyloglucan glycosyltransferase were present in the target sites and co-localized networks indicating the role of the lncRNA and circRNAs in their regulation. Genes related to fruit ripening, namely, trehalose-6-phosphate synthase, squamosa promoter binding protein, WRKY domain transcription factors, MADS box proteins, abscisic stress ripening inhibitors, and different classes of heat shock proteins (HSPs) were also found to be regulated by the identified lncRNA and circRNAs. Besides, ethylene biosynthesis and chlorophyll metabolisms were also found to be regulated by DElncRNAs and circRNAs. A total of 17 transcripts were also successfully validated through RT PCR data. These results would help the breeders to identify the complex molecular network and regulatory role of the lncRNAs and circRNAs in determining the shelf-life of cucumbers.

Resilient biotic response to long-term climate change in the Adriatic Sea

Preserving adaptive capacities of coastal ecosystems, which are currently facing the ongoing climate warming and a multitude of other anthropogenic impacts, requires an understanding of long-term biotic dynamics in the context of major environmental shifts prior to human disturbances. We quantified responses of nearshore mollusk assemblages to long-term climate and sea-level changes using 223 samples (~71,300 specimens) retrieved from latest Quaternary sediment cores of the Adriatic coastal systems. These cores provide a rare chance to study coastal systems that existed during glacial lowstands. The fossil mollusk record indicates that nearshore assemblages of the penultimate interglacial (Late Pleistocene) shifted in their faunal composition during the subsequent ice age, and then reassembled again with the return of interglacial climate in the Holocene. These shifts point to a climate-driven habitat filtering modulated by dispersal processes. The resilient, rather than persistent or stochastic, response of the mollusk assemblages to long-term environmental changes over at least 125 thousand years highlights the historically unprecedented nature of the ongoing anthropogenic stressors (e.g., pollution, eutrophication, bottom trawling, and invasive species) that are currently shifting coastal regions into novel system states far outside the range of natural variability archived in the fossil record.

Documenting fishes in an inland sea with citizen scientist diver surveys: using taxonomic expertise to inform the observation potential of fish species

Long-term monitoring enables scientists and managers to track changes in the temporal and spatial distributions of fishes. Given the anthropogenic stressors affecting marine ecosystem health, there is a critical need for robust, comprehensive fish monitoring programs. Citizen science can serve as a meaningful, cost-effective strategy to survey fish communities. We compared data from 13,000 surveys collected over 21 years (1998-2019) by Reef Environmental Education Foundation (REEF) volunteer divers to a published compilation of Salish Sea ichthyofauna collected using an assortment of methods. Volunteer divers observed 138 of 261 recognized species in the Salish Sea, expanded the range of 18 species into additional Salish Sea sub-basins, and identified one species novel to the Salish Sea (Gibbonsia metzi - Striped Kelpfish). To identify Salish Sea fish species that are most suitable to be monitored by underwater visual census and to evaluate confidence in in situ identification, we developed a categorization system based on the likelihood of recreational divers and snorkelers encountering a given species, and on whether identification required a specimen in hand or could be classified to species visually (with or without a high-quality photograph). REEF divers encountered 62% (138 of 223) of the visually detectable species occurring in the region and 85% (102 of 120) of species most likely to be observed by recreational divers. Our findings show that citizen scientists provide valuable monitoring data for over half of the 261 marine and anadromous fish species known to occupy the Salish Sea, many of which are not routinely monitored otherwise.

Fruit transcriptional profiling of the contrasting genotypes for shelf life reveals the key candidate genes and molecular pathways regulating post-harvest biology in cucumber

Cucumber fruits are perishable in nature and become unfit for market within 2-3 days of harvesting. A natural variant, DC-48 with exceptionally high shelf life was developed and used to dissect the genetic architecture and molecular mechanism for extended shelf life through RNA-seq for first time. A total of 1364 DEGs were identified and cell wall degradation, chlorophyll and ethylene metabolism related genes played key role. Polygalacturunase (PG), Expansin (EXP) and xyloglucan were down regulated determining fruit firmness and retention of fresh green colour was mainly attributed to the low expression level of the chlorophyll catalytic enzymes (CCEs). Gene regulatory networks revealed the hub genes and cross-talk associated with wide variety of the biological processes. Large number of SSRs (21524), SNPs (545173) and InDels (126252) identified will be instrumental in cucumber improvement. A web genomic resource, CsExSLDb developed will provide a platform for future investigation on cucumber post-harvest biology.

Sustainable Urban Water Management in China: A Case Study from Guangzhou and Kunming

In China, the notion of a water sensitive city has gained popularity in urban water management as a result of the detrimental effects of flooding and pollution caused by developmental activities. Urban systems and their interrelationships are critical for long-term urban water management and water sensitivity. This article is a case study considering how a strength, weakness, opportunities, and threat (SWOT) analysis-based approach to urban water management interventions in Guangzhou and Kunming cities (China) enables decision makers to identify solutions for cities to become more water-sensitive and resilient. The similar difficulties and rewards with respect to the contexts of both cities were synthesized using SWOT analysis. The contextual SWOT analysis, in conjunction with the comprehensive inclusion of Sustainable Development Goals (SDGs) in intervention planning in these cities, revealed that a water-sensitive-cities approach requires the establishment of a comprehensively multi-objective rainwater management system; this approach would have the goals of reducing rainwater draining sources, controlling processes and adaptive measures, and governing the system to make it more resilient. The water strategy should be holistic and adaptive, capable of providing a broad range of ecological services and other social benefits consistent with the fulfilment of the Sustainable Development Goals, and adaptable to other Chinese cities seeking to achieve water sensitivity.

Corals as canaries in the coalmine: Towards the incorporation of marine ecosystems into the 'One Health' concept

'One World - One Health' is a developing concept which aims to explicitly incorporate linkages between the environment and human society into wildlife and human health care. Past work in the field has concentrated on aspects of disease, particularly emerging zoonoses, and focused on terrestrial systems. Here, we argue that marine environments are crucial components of the 'One World - One Health' framework, and that coral reefs are the epitome of its underlying philosophy. That is, they provide vast contributions to a wide range of ecosystem services with strong and direct links to human well-being. Further, the sensitivity of corals to climate change, and the current emergence of a wide range of diseases, make coral reefs ideal study systems to assess links, impacts, and feedback mechanisms that can affect human and ecosystem health. There are well established protocols for monitoring corals, as well as global networks of coral researchers, but there remain substantial challenges to understanding these complex systems, their health and links to provisioning of ecosystem services. We explore these challenges and conclude with a look at how developing technology offers potential ways of addressing them. We argue that a greater integration of coral reef research into the 'One World - One Health' framework will enrich our understanding of the many links within, and between, ecosystems and human society. This will ultimately support the development of measures for improving the health of both humans and the environment.