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For:
Grätz V
, Zillikens D, Busch H, Langan EA, Terheyden P.
Sequential Treatment With Targeted and Immune Checkpoint Therapy in Patients With BRAF Positive Metastatic Melanoma: The Importance of Timing?
Front Med (Lausanne)
2019;
6
:257. [PMID:
31921863
PMCID:
PMC6928141
DOI:
10.3389/fmed.2019.00257
]
[
Citation(s) in
RCA
: 1
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[
Impact Index Per Article: 0.2
]
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[Received: 07/23/2019]
[Accepted: 10/25/2019]
[Indexed: 12/31/2022]
Open
Number
Cited by Other Article(s)
1
Betancourt LH
, Gil J, Kim Y, Doma V, Çakır U, Sanchez A, Murillo JR, Kuras M, Parada IP, Sugihara Y, Appelqvist R, Wieslander E, Welinder C, Velasquez E, de Almeida NP, Woldmar N, Marko‐Varga M, Pawłowski K, Eriksson J, Szeitz B, Baldetorp B, Ingvar C, Olsson H, Lundgren L, Lindberg H, Oskolas H, Lee B, Berge E, Sjögren M, Eriksson C, Kim D, Kwon HJ, Knudsen B, Rezeli M, Hong R, Horvatovich P, Miliotis T, Nishimura T, Kato H, Steinfelder E, Oppermann M, Miller K, Florindi F, Zhou Q, Domont GB, Pizzatti L, Nogueira FCS, Horvath P, Szadai L, Tímár J, Kárpáti S, Szász AM, Malm J, Fenyö D, Ekedahl H, Németh IB, Marko‐Varga G. The human melanoma proteome atlas-Defining the molecular pathology.
Clin Transl Med
2021;
11
:e473. [PMID:
34323403
PMCID:
PMC8255060
DOI:
10.1002/ctm2.473
]
[
Citation(s) in
RCA
: 7
]
[
Impact Index Per Article: 2.3
]
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[Received: 03/12/2021]
[Revised: 06/03/2021]
[Accepted: 06/08/2021]
[Indexed: 01/19/2023]
Open
Abstract
The MM500 study is an initiative to map the protein levels in malignant melanoma tumor samples, focused on in-depth histopathology coupled to proteome characterization. The protein levels and localization were determined for a broad spectrum of diverse, surgically isolated melanoma tumors originating from multiple body locations. More than 15,500 proteoforms were identified by mass spectrometry, from which chromosomal and subcellular localization was annotated within both primary and metastatic melanoma. The data generated by global proteomic experiments covered 72% of the proteins identified in the recently reported high stringency blueprint of the human proteome. This study contributes to the NIH Cancer Moonshot initiative combining detailed histopathological presentation with the molecular characterization for 505 melanoma tumor samples, localized in 26 organs from 232 patients.
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Key Words
heterogeneity
histopathology
metastatic malignant melanoma
proteogenomics
subcellular localization
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MESH Headings
Adult
Aged
Aged, 80 and over
Cell Line, Tumor
Chromatography, High Pressure Liquid
Female
Humans
Male
Melanoma/metabolism
Melanoma/pathology
Middle Aged
Proteome/analysis
Proteomics/methods
Skin Neoplasms/metabolism
Skin Neoplasms/pathology
Tandem Mass Spectrometry
Young Adult
Melanoma, Cutaneous Malignant
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Grants
Fru Berta Kamprads Stiftelse
Conselho Nacional de Desenvolvimento Científico e Tecnológico
Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro
Coordenação de Aperfeiçoamento de Pessoal de Nível Superior
Hungarian Academy of Sciences
National Research Foundation of Korea
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Affiliation(s)
Lazaro Hiram Betancourt
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Jeovanis Gil
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Yonghyo Kim
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Viktória Doma
Department of Pathology
Semmelweis University
Hungary
Department of Dermatology
Venerology and Dermatooncology
Semmelweis University
Budapest
Hungary
Uğur Çakır
Department of Dermatology
Venerology and Dermatooncology
Semmelweis University
Budapest
Hungary
Aniel Sanchez
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
Jimmy Rodriguez Murillo
Department of Biochemistry and Biophysics
Karolinska Institute
Stockholm
Sweden
Magdalena Kuras
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
Indira Pla Parada
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
Yutaka Sugihara
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Roger Appelqvist
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Clinical Protein Science & Imaging
Biomedical Centre
Department of Biomedical Engineering
Lerund University
Lund
Sweden
Elisabet Wieslander
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Charlotte Welinder
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Erika Velasquez
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
Natália Pinto de Almeida
Clinical Protein Science & Imaging
Biomedical Centre
Department of Biomedical Engineering
Lerund University
Lund
Sweden
Chemistry Institute
Federal University of Rio de Janeiro
Rio de Janeiro
Brazil
Nicole Woldmar
Clinical Protein Science & Imaging
Biomedical Centre
Department of Biomedical Engineering
Lerund University
Lund
Sweden
Chemistry Institute
Federal University of Rio de Janeiro
Rio de Janeiro
Brazil
Matilda Marko‐Varga
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Krzysztof Pawłowski
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
Department of Molecular Biology
University of Texas Southwestern Medical Center
Texas
USA
Department of Biochemistry and Microbiology
Warsaw University of Life Sciences
Warszawa
Poland
Jonatan Eriksson
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Beáta Szeitz
Department of Internal Medicine and Oncology
Semmelweis University
Budapest
Hungary
Bo Baldetorp
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Christian Ingvar
SUS University Hospital Lund
Lund
Sweden
Department of Surgery
Clinical Sciences
Lund University
SUS
Lund
Sweden
Håkan Olsson
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
SUS University Hospital Lund
Lund
Sweden
Lotta Lundgren
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
SUS University Hospital Lund
Lund
Sweden
Henrik Lindberg
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Henriett Oskolas
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Boram Lee
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Ethan Berge
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Marie Sjögren
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Carina Eriksson
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
Dasol Kim
Chemical Genomics Global Research Lab
Department of Biotechnology
College of Life Science and Biotechnology
Yonsei University
Seoul
Republic of Korea
Ho Jeong Kwon
Chemical Genomics Global Research Lab
Department of Biotechnology
College of Life Science and Biotechnology
Yonsei University
Seoul
Republic of Korea
Beatrice Knudsen
Department of Pathology
University of Utah
Salt Lake City
USA
Melinda Rezeli
Clinical Protein Science & Imaging
Biomedical Centre
Department of Biomedical Engineering
Lerund University
Lund
Sweden
Runyu Hong
Department of Biochemistry and Molecular Pharmacology
Institute for Systems Genetics
New York University Grossman School of Medicine
New York
USA
Peter Horvatovich
Department of Analytical Biochemistry
Faculty of Science and Engineering
University of Groningen
Groningen
The Netherlands
Tasso Miliotis
Translational Science and Experimental Medicine
Cardiovascular
Renal and Metabolism
IMED Biotech Unit
AstraZeneca
Gothenburg
Sweden
Toshihide Nishimura
Department of Oncology
St. Marianna University School of Medicine
Kanagawa
Japan
Harubumi Kato
Department of Surgery
Tokyo Medical University
Tokyo
Japan
Erik Steinfelder
ThermoFisher Scientific
HQ
San Jose
California
USA
Madalina Oppermann
ThermoFisher Scientific
HQ
San Jose
California
USA
Ken Miller
ThermoFisher Scientific
HQ
San Jose
California
USA
Francesco Florindi
BBMRI‐ERIC HQ
Graz
Austria
Qimin Zhou
Department of Plastic and Reconstructive Surgery
Shanghai Ninth People's Hospital
Shanghai Jiao Tong University School of Medicine
Shanghai
P. R. China
Gilberto B. Domont
Chemistry Institute
Federal University of Rio de Janeiro
Rio de Janeiro
Brazil
Luiciana Pizzatti
Chemistry Institute
Federal University of Rio de Janeiro
Rio de Janeiro
Brazil
Fábio C. S. Nogueira
Chemistry Institute
Federal University of Rio de Janeiro
Rio de Janeiro
Brazil
Peter Horvath
Synthetic and Systems Biology Unit
Biological Research Center
Szeged
Hungary
Leticia Szadai
Department of Dermatology and Allergology
University of Szeged
Szeged
Hungary
József Tímár
Department of Pathology
Semmelweis University
Hungary
Sarolta Kárpáti
Department of Dermatology
Venerology and Dermatooncology
Semmelweis University
Budapest
Hungary
A. Marcell Szász
Department of Bioinformatics
Semmelweis University
Budapest
Hungary
Department of Internal Medicine and Oncology
Semmelweis University
Budapest
Hungary
Johan Malm
Section for Clinical Chemistry
Department of Translational Medicine
Lund University
Skåne University Hospital Malmö
Malmö
Sweden
David Fenyö
Department of Biochemistry and Molecular Pharmacology
Institute for Systems Genetics
New York University Grossman School of Medicine
New York
USA
Henrik Ekedahl
Division of Oncology
Department of Clinical Sciences Lund
Lund University
Lund
Sweden
SUS University Hospital Lund
Lund
Sweden
István Balázs Németh
Department of Dermatology and Allergology
University of Szeged
Szeged
Hungary
György Marko‐Varga
Clinical Protein Science & Imaging
Biomedical Centre
Department of Biomedical Engineering
Lerund University
Lund
Sweden
Chemical Genomics Global Research Lab
Department of Biotechnology
College of Life Science and Biotechnology
Yonsei University
Seoul
Republic of Korea
Department of Surgery
Tokyo Medical University
Tokyo
Japan
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