The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions

Degradation of 4-nonylphenol in marine sediments using calcium peroxide activated by water hyacinth (Eichhornia crassipes)-derived biochar

The contamination of marine sediments by 4-nonylphenol (4-NP) has become a global environmental problem, therefore there are necessaries searching appropriate and sustainable remediation methods for in-situ applications. Herein, water hyacinth [(WH) (Eichhornia crassipes)]-derived metal-free biochar (WHBC) prepared at 300-900 °C was used to promote the calcium peroxide (CP)-mediated remediation of 4-NP-contaminaed sediments. At [CP] = 4.37 × 10^-4 M, [WHBC] = 1.5 g L^-1, and pH = 6.0, the degradation of 4-NP was 77% in 12 h following the pseudo-first order rate law with rate constant (k_obs) of 4.2 × 10^-2 h^-1. The efficient 4-NP degradation performance and reaction mechanisms of the WHBC/CP system was ascribed to the synergy between the reactive species (HO• and ¹O₂) at the WHBC surface on which there were abundant electron-rich carbonyl groups and defects/vacancies in the catalyst structure provides active sites, and the ability of the graphitized carbon framework to act as a medium for electron shuttling. According to microbial community analysis based on amplicon sequence variants, bacteria of the genus Solirubrobacter (Actinobacteria phylum) were dominant in WHBC/CP-treated sediments and were responsible for the biodegradation of 4-NP. The results showed great promise and novelty of the hydroxyl radical-driven carbon advanced oxidation processes (HR-CAOPs) that relies on the value-added utilization of water hyacinth for contaminated sediment remediation in achieving circular bioeconomy.

Molecular Indicators of Sources and Biodegradation of Organic Matter in Sediments of Fluid Discharge Zones of Lake Baikal

This paper performs a detailed study of a wide set of organic-geochemical proxies in 15 sediment cores collected from the main basins of Lake Baikal (the northern, the central and the southern) where processes of focused fluid discharge were detected. A variety of studied zones includes sites with gas and hydrothermal seepage, mud volcanoes with or without gas-oil fluid discharge, gas hydrates and authigenic carbonates. The composition of the dispersed organic matter and individual hydrocarbon molecular markers (n-alkanes, dimethyl alkanes, isoprenoids, steranes, terpanes and polycyclic aromatic hydrocarbons) testify to the input from predominantly allochthonous terrestrial and autochthonous microbial and algal sources. The studied sources, maturity and biodegradation parameters of organic matter vary significantly for areas with different fluid discharge. The composition of specific biomarkers including isoprenoids and immature hopanoids reflects the lateral and vertical changes of microbial activity in sediments associated with various environmental conditions. The identified types of terpanes distribution (mature, mixed and immature) correlate well with types of fluid discharge and attest to the development of various methanogenic and methanotrophic microbial communities in sediments. Moreover, the revealed specificity of microbial molecular markers distribution allowed us to suggest the fluid discharge processes in zones where they were not previously detected.

Role of environmental factors in shaping the soil microbiome

The soil microbiome comprises one of the most important and complex components of all terrestrial ecosystems as it harbors millions of microbes including bacteria, fungi, archaea, viruses, and protozoa. Together, these microbes and environmental factors contribute to shaping the soil microbiome, both spatially and temporally. Recent advances in genomic and metagenomic analyses have enabled a more comprehensive elucidation of the soil microbiome. However, most studies have described major modulators such as fungi and bacteria while overlooking other soil microbes. This review encompasses all known microbes that may exist in a particular soil microbiome by describing their occurrence, abundance, diversity, distribution, communication, and functions. Finally, we examined the role of several abiotic factors involved in the shaping of the soil microbiome.

The effect of 16S rRNA region choice on bacterial community metabarcoding results

In this work, we compare the resolution of V2-V3 and V3-V4 16S rRNA regions for the purposes of estimating microbial community diversity using paired-end Illumina MiSeq reads, and show that the fragment, including V2 and V3 regions, has higher resolution for lower-rank taxa (genera and species). It allows for a more precise distance-based clustering of reads into species-level OTUs. Statistically convergent estimates of the diversity of major species (defined as those that together are covered by 95% of reads) can be achieved at the sample sizes of 10000 to 15000 reads. The relative error of the Shannon index estimate for this condition is lower than 4%.

Seasonal and spatial variation in the sediment bacterial community and diversity of Lake Bosten, China

To explore the influence of seasonal and regional environmental factors on the bacterial community composition (BCC) and diversity in the sediments of Lake Bosten, the 16S rRNA gene of sediment bacteria in four samples from the lake center area and the macrophyte-dominated area were sequenced using 454 pyrosequencing. According to the operational taxonomic units (OTUs), diversity index, relative abundance, and redundancy analysis (RDA) of the bacteria, the results showed that (i) the bacterial diversity of the lake center area was lower than that of the macrophyte-dominated area, and it was higher in winter than that in summer as a whole; (ii) seasonal factors and geographical changes had obvious effects on the abundance of dominant bacteria, including Proteobacteria and Firmicutes; (iii) a large number of unclassified bacteria were detected in this study, and the dominant unclassified genera in both lake areas included unclassified Sva0485, unclassified Anaerolineaceae, and unclassified Nitrospiraceae; and (iv) TN and TOC were the main environmental factors influencing the sediment bacterial community in Lake Bosten, as determined by RDA analysis. The study provides a reference for the in-depth understanding the impact with the change of time and space on sediment microbes in Lake Bosten.