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Zhao Y, Li T, Shao P, Sun J, Xu W, Zhang Z. Variation in Bacterial Community Structure in Rhizosphere and Bulk Soils of Different Halophytes in the Yellow River Delta. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2021.816918] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Soil microorganisms play the important role in driving biogeochemical cycles. However, it is still unclear on soil microbial community characteristics and microbial driving mechanism in rhizosphere and bulk soils of different halophyte species. In this study, we analyzed bacterial communities in the rhizosphere and bulk soils of three typical halophytes in the Yellow River Delta, i.e., Phragmites communis, Suaeda salsa, and Aeluropus sinensis, by high-throughput sequencing. The contents of total carbon, total nitrogen, and available phosphorus in rhizosphere soils of the three halophytes were significantly higher than those in bulk soils, which suggested a nutrient enrichment effect of the rhizosphere. Rhizosphere soil bacterial α-diversity of P. communis was higher than that in bulk soil, whereas bacterial α-diversity in rhizosphere soil of S. salsa and A. sinensis was lower than those in bulk soil. The dominant bacterial phyla were Proteobacteria, Actinobacteria, Chloroflexi, and Bacteroidetes, which accounted for 31, 20.5, 16.3, and 10.3%, respectively. LDA effect size (LEfSe) analysis showed that the bacterial species with significant differences in expression abundance was obviously different in the rhizosphere and bulk soil of three halophytes. The principal component analysis (PCoA) showed that bacterial community composition was greatly different between rhizosphere and bulk soils of P. communis and S. salsa, while no difference in A. sinensis. Changed bacterial community composition was mainly ascribed to salinity in rhizosphere and bulk soils. Additionally, salinity was positively correlated with Bacteroidetes and negatively correlated with Actinobacteria and Acidobacteria. Our study clarified the variation in bacterial community structure between rhizosphere and bulk soils with soil physicochemical properties, which proved a biological reference to indicate the characteristics of saline and alkaline land.
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Etto RM, Jesus EDC, Cruz LM, Schneider BSF, Tomachewski D, Urrea-Valencia S, Gonçalves DRP, Galvão F, Ayub RA, Curcio GR, Steffens MBR, Galvão CW. Influence of environmental factors on the tropical peatlands diazotrophic communities from the Southern Brazilian Atlantic Rain Forest. Lett Appl Microbiol 2021; 74:543-554. [PMID: 34951701 DOI: 10.1111/lam.13638] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2021] [Revised: 10/10/2021] [Accepted: 12/17/2021] [Indexed: 11/26/2022]
Abstract
The tropical peatlands of southern Brazil are essential for the maintenance of the Atlantic Rain Forest, one of the 25 hotspots of biodiversity in the world. Although diazotrophic microorganisms are essential for the maintenance of this nitrogen limited ecosystem, so far studies have focused only on microorganisms involved in the carbon cycle. In this work, peat samples were collected from three tropical peatland regions during dry and rainy seasons and their chemical and microbial characteristics were evaluated. Our results showed that the structure of the diazotrophic communities in the Brazilian tropical peatlands differs in the evaluated seasons. The abundance of the genus Bradyrhizobium showed to be affected by rainfall and peat pH. Despite the shifts of the nitrogen fixing population in the tropical peatland caused by seasonality it showed to be constantly dominated by α-Proteobacteria followed by Cyanobacteria. In addition, more than 50% of nifH gene sequences have not been classified, indicating the necessity for more studies in tropical peatland, since the reduction of N supply in the peatlands stimulates the recalcitrant organic matter decomposition performed by peatland microorganisms, influencing the C stock.
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Affiliation(s)
- Rafael Mazer Etto
- Microbial Molecular Biology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
| | | | - Leonardo Magalhães Cruz
- Nucleus of Nitrogen Fixation, Federal University of Paraná, CEP, 81531-980, Curitiba - PR, Brazil
| | | | - Douglas Tomachewski
- Microbial Molecular Biology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
| | - Salomé Urrea-Valencia
- Microbial Molecular Biology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
| | - Daniel Ruiz Potma Gonçalves
- Microbial Molecular Biology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
| | - Franklin Galvão
- Forest Ecology Laboratory, Universidade Federal do Paraná, CEP, 80210-170, Curitiba - PR, Brazil
| | - Ricardo Antônio Ayub
- Applied Biotechnology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
| | | | | | - Carolina Weigert Galvão
- Microbial Molecular Biology Laboratory, State University of Ponta Grossa, CEP, 84030-900, Ponta Grossa - PR, Brazil
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Zhang B, Xue K, Zhou S, Che R, Du J, Tang L, Pang Z, Wang F, Wang D, Cui X, Hao Y, Wang Y. Phosphorus mediates soil prokaryote distribution pattern along a small-scale elevation gradient in Noijin Kangsang Peak, Tibetan Plateau. FEMS Microbiol Ecol 2019; 95:5499016. [DOI: 10.1093/femsec/fiz076] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2019] [Accepted: 05/24/2019] [Indexed: 01/12/2023] Open
Affiliation(s)
- Biao Zhang
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Kai Xue
- University of Chinese Academy of Sciences, Beijing 100049, China
- Key Laboratory of Environmental Biotechnology, Chinese Academy of Sciences (CAS), Beijing 100085, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing 100101, China
| | - Shutong Zhou
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Rongxiao Che
- Institute of International Rivers and Eco-security, Yunnan University, Kunming 650091, China
| | - Jianqing Du
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Li Tang
- University of Chinese Academy of Sciences, Beijing 100049, China
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Nathan QLD 4111, Australia
| | - Zhe Pang
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Fang Wang
- University of Chinese Academy of Sciences, Beijing 100049, China
- Environmental Futures Research Institute, School of Environment and Science, Griffith University, Nathan QLD 4111, Australia
| | - Di Wang
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Xiaoyong Cui
- University of Chinese Academy of Sciences, Beijing 100049, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing 100101, China
| | - Yanbin Hao
- University of Chinese Academy of Sciences, Beijing 100049, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing 100101, China
| | - Yanfen Wang
- University of Chinese Academy of Sciences, Beijing 100049, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Chinese Academy of Sciences (CAS), Beijing 100101, China
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