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Wang C, Sun X, Chen Y, Zhang Y, Li M. Comparative metabolomic analysis reveals Ni(II) stress response mechanism of Comamonas testosteroni ZG2. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2023; 263:115244. [PMID: 37441950 DOI: 10.1016/j.ecoenv.2023.115244] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 07/05/2023] [Accepted: 07/06/2023] [Indexed: 07/15/2023]
Abstract
The focus on the toxicity of nickel (Ni(II)) in animal and human cells has increased recently. Ni(II) contamination hazards to animals and humans can be reduced by bioremediation methods. However, one of the limitation of bioremediation bacteria in soil remediation is that they cannot survive in moderate and heavy contamination Ni(II)-contaminated environments. Therefore, the Ni(II) response mechanism of Comamonas testosteroni ZG2 which has soil remediation ability in high-concentration Ni(II) environment must be elucidated. The results demonstrated that the ZG2 strain can survive at 350 mg/L concentration of Ni(II), but the growth of ZG2 was completely inhibited under the concentration of 400 mg/L Ni(II) with significant alterations in the membrane morphology, adhesion behavior, and functional groups and serious membrane damage. Furthermore, the metabolic analysis showed that Ni(II) may affect the adhesion behavior and biofilm formation of the ZG2 strain by affecting the abundance of metabolites in amino acid biosynthesis, aminoacyl-tRNA biosynthesis, ABC transporter, and cofactor biosynthesis pathways, and inhibiting its growth. This study provides new evidence clarifying the response mechanism of Ni(II) stress in the ZG2 strain, thus playing a significant role in designing the strategies of bioremediation.
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Affiliation(s)
- Chunli Wang
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China; College of Animal Science, Jilin University, Changchun, Jilin 130062, China
| | - Xiaotong Sun
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China
| | - Yuanhui Chen
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China
| | - Yu Zhang
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China
| | - Mingtang Li
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China.
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Wang C, Hao L, Sun X, Yang Y, Yin Q, Li M. Response mechanism of psychrotolerant Bacillus cereus D2 towards Ni (II) toxicity and involvement of amino acids in Ni (II) toxicity reduction. JOURNAL OF HAZARDOUS MATERIALS 2022; 430:128363. [PMID: 35183050 DOI: 10.1016/j.jhazmat.2022.128363] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/04/2021] [Revised: 01/05/2022] [Accepted: 01/24/2022] [Indexed: 06/14/2023]
Abstract
The toxic effect of Nickel (Ni (II)) on humans and animals has been previously addressed. Owing to the important application of psychrotolerant bacteria in Ni (II) damage remediation in contamination sites at low temperatures, the response mechanism of psychrotolerant bacteria to Ni (II) toxicity must be elucidated. Therefore, the effect of Ni (II) toxicity on a psychrotolerant Bacillus cereus D2 was studied, showing a way to alleviate the Ni (II) toxicity in strain D2. The results showed that strain D2 growth was completely inhibited at a concentration of 100 mg/L of Ni (II). The main effects of Ni (II) toxicity on strain D2 were membrane damage and reactive oxygen species-dependent oxidative stress. Additionally, Ni (II) toxicity resulted in dysregulation of the cell cycle in strain D2. Furthermore, metabolomic analysis showed that the biosynthesis of amino acids and ABC transporters were significantly affected, and the relative abundance of seven important amino acids changed in a concentration-dependent manner. Addition of 20 mM or 5 mM amino acids to 100 mg/L Ni (II)-treated strain D2 restored its growth. This study provides insights into the way to alleviate the Ni (II) toxicity in strain D2, thus contributing to the development of bioremediation strategies.
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Affiliation(s)
- Chunli Wang
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China; College of Animal Science, Jilin University, Changchun, Jilin 130062, China
| | - Linlin Hao
- College of Animal Science, Jilin University, Changchun, Jilin 130062, China
| | - Xiaotong Sun
- College of Animal Science, Jilin University, Changchun, Jilin 130062, China
| | - Yi Yang
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China
| | - Qiuxia Yin
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China
| | - Mingtang Li
- College of Resource and Environment, Jilin Agricultural University, Changchun 130118, China.
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Farias P, Francisco R, Maccario L, Herschend J, Piedade AP, Sørensen S, Morais PV. Impact of Tellurite on the Metabolism of Paenibacillus pabuli AL109b With Flagellin Production Explaining High Reduction Capacity. Front Microbiol 2021; 12:718963. [PMID: 34557171 PMCID: PMC8453073 DOI: 10.3389/fmicb.2021.718963] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2021] [Accepted: 08/10/2021] [Indexed: 11/25/2022] Open
Abstract
Tellurium (Te) is a metalloid with scarce and scattered abundance but with an increased interest in human activity for its uses in emerging technologies. As is seen for other metals and metalloids, the result of mining activity and improper disposal of high-tech devices will lead to niches with increased abundance of Te. This metalloid will be more available to bacteria and represent an increasing selective pressure. This environmental problem may constitute an opportunity to search for microorganisms with genetic and molecular mechanisms of microbial resistance to Te toxic anions. Organisms from Te-contaminated niches could provide tools for Te remediation and fabrication of Te-containing structures with added value. The objective of this study was to determine the ability of a high metal-resistant Paenibacillus pabuli strain ALJ109b, isolated from high metal content mining residues, to reduce tellurite ion, and to evaluate the formation of metallic tellurium by cellular reduction, isolate the protein responsible, and determine the metabolic response to tellurite during growth. P. pabuli ALJ109b demonstrated to be resistant to Te (IV) at concentrations higher than reported for its genus. It can efficiently remove soluble Te (IV) from solution, over 20% in 8 h of growth, and reduce it to elemental Te, forming monodisperse nanostructures, verified by scattering electron microscopy. Cultivation of P. pabuli ALJ109b in the presence of Te (IV) affected the general protein expression pattern, and hence the metabolism, as demonstrated by high-throughput proteomic analysis. The Te (IV)-induced metabolic shift is characterized by an activation of ROS response. Flagellin from P. pabuli ALJ109b demonstrates high Te (0) forming activity in neutral to basic conditions in a range of temperatures from 20°C to 37°C. In conclusion, the first metabolic characterization of a strain of P. pabuli response to Te (IV) reveals a highly resistant strain with a unique Te (IV) proteomic response. This strain, and its flagellin, display, all the features of potential tools for Te nanoparticle production.
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Affiliation(s)
- Pedro Farias
- Department of Life Sciences, CEMMPRE, University of Coimbra, Coimbra, Portugal
| | - Romeu Francisco
- Department of Life Sciences, CEMMPRE, University of Coimbra, Coimbra, Portugal
| | - Lorrie Maccario
- Section of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Jakob Herschend
- Section of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Ana Paula Piedade
- CEMMPRE, Department Mechanical Engineering, University of Coimbra, Coimbra, Portugal
| | - Søren Sørensen
- Section of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Paula V. Morais
- Department of Life Sciences, CEMMPRE, University of Coimbra, Coimbra, Portugal
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Rana A, Sindhu M, Kumar A, Dhaka RK, Chahar M, Singh S, Nain L. Restoration of heavy metal-contaminated soil and water through biosorbents: A review of current understanding and future challenges. PHYSIOLOGIA PLANTARUM 2021; 173:394-417. [PMID: 33724481 DOI: 10.1111/ppl.13397] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Revised: 02/13/2021] [Accepted: 03/07/2021] [Indexed: 06/12/2023]
Abstract
Heavy metal pollution in soil and water is a potential threat to human health as it renders food quality substandard. Different biosorbents such as microbial and agricultural biomass have been exploited for heavy metal immobilization in soil and sorptive removal in waters. Biosorption is an effective and sustainable method for heavy metal removal in soil and water, but the inherent challenges are to find cheap, selective, robust, and cost-effective bioadsorbents. Microbial and agricultural biomass and their modified forms such as nanocomposites and carbonaceous materials (viz., biochar, nanobiochar, biocarbon), might be useful for sequestration of heavy metals in soil via adsorption, ion exchange, complexation, precipitation, and enzymatic transformation mechanisms. In this review, potential biosorbents and their metal removal capacity in soil and water are discussed. The microbial adsorbents and modified composites of agricultural biomasses show improved performance, stability, reusability, and effectively immobilize heavy metals from soil and water. In the future, researchers may consider the modified composites, encapsulated biosorbents for soil and water remediation.
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Affiliation(s)
- Anuj Rana
- Department of Microbiology (COBS & H), CCS Haryana Agricultural University, Hisar, India
| | - Meena Sindhu
- Department of Microbiology (COBS & H), CCS Haryana Agricultural University, Hisar, India
| | - Ajay Kumar
- Department of Microbiology (COBS & H), CCS Haryana Agricultural University, Hisar, India
| | - Rahul Kumar Dhaka
- Department of Chemistry, Environmental Sciences, and Centre for Bio-Nanotechnology, CCS Haryana Agricultural University, Hisar, India
| | - Madhvi Chahar
- Department of food quality and safety, Institute of Post Harvest, Agricultural Research Organization, The Volcani Research Center, Bet-Dagan, Israel
| | - Surender Singh
- Department of Microbiology, Central University of Haryana, Mahendragarh, India
| | - Lata Nain
- Division of Microbiology, ICAR-Indian Agricultural Research Institute, New Delhi, India
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Microbial Community Composition Correlates with Metal Sorption in an Ombrotrophic Boreal Bog: Implications for Radionuclide Retention. SOIL SYSTEMS 2021. [DOI: 10.3390/soilsystems5010019] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Microbial communities throughout the 6.5 m depth profile of a boreal ombrotrophic bog were characterized using amplicon sequencing of archaeal, fungal, and bacterial marker genes. Microbial populations and their relationship to oxic and anoxic batch sorption of radionuclides (using radioactive tracers of I, Se, Cs, Ni, and Ag) and the prevailing metal concentrations in the natural bog was investigated. The majority of the detected archaea belonged to the Crenarchaeota, Halobacterota, and Thermoplasmatota, whereas the fungal communities consisted of Ascomycota, Basidiomycota, and unclassified fungi. The bacterial communities consisted mostly of Acidobacteriota, Proteobacteria, and Chloroflexi. The occurrence of several microbial genera were found to statistically significantly correlate with metal concentrations as well as with Se, Cs, I, and Ag batch sorption data. We suggest that the metal concentrations of peat, gyttja, and clay layers affect the composition of the microbial populations in these nutrient-low conditions and that particularly parts of the bacterial and archaeal communities tolerate high concentrations of potentially toxic metals and may concurrently contribute to the total retention of metals and radionuclides in this ombrotrophic environment. In addition, the varying metal concentrations together with chemical, mineralogical, and physical factors may contribute to the shape of the total archaeal and bacterial populations and most probably shifts the populations for more metal resistant genera.
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