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Elegbede JA, Lateef A, Gueguim-Kana EB, Beukes LS, Matyumza N. Multi-functional xylanase from Aspergillus sydowii: biosynthesis of nanoconjugates, optimization by Taguchi approach and biodeinking potential. Prep Biochem Biotechnol 2024; 54:622-636. [PMID: 37772603 DOI: 10.1080/10826068.2023.2261037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
The search for effective production of xylanase which is an important industrial enzyme led to the present study that explored xylanase production by Aspergillus sydowii SF through Taguchi optimization that incorporated nanoconjugates in submerged fermentation. Calcium and zinc oxide nanoconjugates biosynthesized by xylanase were characterized via UV-Vis spectroscopy, Fourier transform infrared spectroscopy, and Transmission electron microscopy (TEM). The xylanase-mediated calcium oxide and zinc oxide nanoconjugates with λmax of 374 and 316 nm, respectively, and were 5.32-17.69 nm in size. Xylanase production was improved by 2.90-10.58 folds (64.24-234.15 U/mL) through Taguchi optimization cum nanoconjugates, and ANOVA showed that nanoconjugates contributed 13.62-65.97% to improved production. The xylanase had up to 88.38% deinking activity, with 49.60-84.64% removal of blue color. The remarkable xylanase production, its use to biosynthesize nanoconjugates and biodeinking potentials contribute to the development of versatile biocatalysts with applications in biotechnology, nanotechnology, and sustainable paper production. To the best of our knowledge, this represents the first report of xylanase for biosynthesis of calcium oxide and zinc oxide nanoparticles, as well as nanosupplementation to induce xylanase production, which can open new vista in bioprocess optimization.
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Affiliation(s)
- J A Elegbede
- Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - A Lateef
- Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
- Nanotechnology Research Group (NANO+), Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - E B Gueguim-Kana
- Department of Microbiology, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
| | - L S Beukes
- Department of Microbiology, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
| | - N Matyumza
- Microscopy and Microanalysis Unit, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
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El-Gendi H, Badawy AS, Bakhiet EK, Rawway M, Ali SG. Valorization of lignocellulosic wastes for sustainable xylanase production from locally isolated Bacillus subtilis exploited for xylooligosaccharides' production with potential antimicrobial activity. Arch Microbiol 2023; 205:315. [PMID: 37605001 PMCID: PMC10442310 DOI: 10.1007/s00203-023-03645-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 06/21/2023] [Accepted: 07/30/2023] [Indexed: 08/23/2023]
Abstract
The worldwide availability of lignocellulosic wastes represents a serious environmental challenge with potential opportunities. Xylanases are crucial in lignocellulosic bio-hydrolysis, but the low enzyme productivity and stability are still challenges. In the current study, Bacillus subtilis (coded ARSE2) revealed potent xylanase activity among other local isolates. The enzyme production optimization revealed that maximum enzyme production (490.58 U/mL) was achieved with 1% xylan, 1.4% peptone, and 5% NaCl at 30 °C and pH 9. Furthermore, several lignocellulosic wastes were exploited for sustainable xylanase production, where sugarcane bagasse (16%) under solid-state fermentation and woody sawdust (2%) under submerged fermentation supported the maximum enzyme titer of about 472.03 and 485.7 U/mL, respectively. The partially purified enzyme revealed two protein bands at 42 and 30 kDa. The partially purified enzyme revealed remarkable enzyme activity and stability at 50-60 °C and pH 8-9. The enzyme also revealed significant stability toward tween-80, urea, DTT, and EDTA with Vmax and Km values of 1481.5 U/mL and 0.187 mM, respectively. Additionally, the purified xylanase was applied for xylooligosaccharides production, which revealed significant antimicrobial activity toward Staphylococcus aureus with lower activity against Escherichia coli. Hence, the locally isolated Bacillus subtilis ARSE2 could fulfill the xylanase production requirements in terms of economic production at a high titer with promising enzyme characteristics. Additionally, the resultant xylooligosaccharides revealed a promising antimicrobial potential, which paves the way for other medical applications.
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Affiliation(s)
- Hamada El-Gendi
- Bioprocess Development Department, Genetic Engineering and Biotechnology Research Institute, City of Scientific Research and Technological Applications (SRTA-City), New Borg El-Arab City, Alexandria, 21934, Egypt.
| | - Ahmed S Badawy
- Botany and Microbiology Department, Faculty of Science, AL-Azhar University, Assiut, Egypt
| | - Elsayed K Bakhiet
- Botany and Microbiology Department, Faculty of Science, AL-Azhar University, Assiut, Egypt
| | - Mohammed Rawway
- Botany and Microbiology Department, Faculty of Science, AL-Azhar University, Assiut, Egypt
| | - Salah G Ali
- Botany and Microbiology Department, Faculty of Science, AL-Azhar University, Assiut, Egypt
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Hu S, Zhu R, Yu XY, Wang BT, Ruan HH, Jin FJ. A High-Quality Genome Sequence of the Penicillium oxalicum 5-18 Strain Isolated from a Poplar Plantation Provides Insights into Its Lignocellulose Degradation. Int J Mol Sci 2023; 24:12745. [PMID: 37628925 PMCID: PMC10454814 DOI: 10.3390/ijms241612745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2023] [Revised: 08/06/2023] [Accepted: 08/11/2023] [Indexed: 08/27/2023] Open
Abstract
Studies on the degradation of plant cell wall polysaccharides by fungal extracellular enzymes have attracted recent attention from researchers. Xylan, abundant in hemicellulose, that play great role in connection between cellulose and lignin, has seen interest in its hydrolytic enzymatic complex. In this study, dozens of fungus species spanning genera were isolated from rotting leaves based on their ability to decompose xylan. Among these isolates, a strain with strong xylanase-producing ability was selected for further investigation by genome sequencing. Based on phylogenetic analysis of ITS (rDNA internal transcribed spacer) and LSU (Large subunit 28S rDNA) regions, the isolate was identified as Penicillium oxalicum. Morphological analysis also supported this finding. Xylanase activity of this isolated P. oxalicum 5-18 strain was recorded to be 30.83 U/mL using the 3,5-dinitro-salicylic acid (DNS) method. Further genome sequencing reveals that sequenced reads were assembled into a 30.78 Mb genome containing 10,074 predicted protein-encoding genes. In total, 439 carbohydrate-active enzymes (CAZymes) encoding genes were predicted, many of which were associated with cellulose, hemicellulose, pectin, chitin and starch degradation. Further analysis and comparison showed that the isolate P. oxalicum 5-18 contains a diverse set of CAZyme genes involved in degradation of plant cell wall components, particularly cellulose and hemicellulose. These findings provide us with valuable genetic information about the plant biomass-degrading enzyme system of P. oxalicum, facilitating a further exploration of the repertoire of industrially relevant lignocellulolytic enzymes of P. oxalicum 5-18.
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Affiliation(s)
| | | | | | | | | | - Feng-Jie Jin
- College of Biology and the Environment, Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China; (S.H.); (R.Z.); (X.-Y.Y.); (B.-T.W.); (H.-H.R.)
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Ganapathiwar S, Bhukya B. In vitro assessment for the probiotic potential of Pichia kudriavzevii. Bioinformation 2023; 19:441-444. [PMID: 37822822 PMCID: PMC10563575 DOI: 10.6026/97320630019441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Revised: 04/30/2023] [Accepted: 04/30/2023] [Indexed: 10/13/2023] Open
Abstract
It is of interest to isolate the probiotic yeast Pichia kudriavzevii based on its probiotic characteristics and enzyme production. The isolate was able to withstand high acid, bile concentration and showed a high viability. Additionally, it showed auto aggregation ability that increases with time and hydrophobicity with xylene. It was resistant to different antibiotics and showed no hemolytic activity. The isolate was also capable of producing phytase that can break down phytate. Overall, the characteristics of P. kudriavzevii suggest that it could potentially have probiotic properties, and its ability to produce phytase could also make it useful in feed and animal industries.
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Affiliation(s)
- Swaruparani Ganapathiwar
- Centre for Microbial and Fermentation Technology, Department of Microbiology, University College of Science, Osmania University, Hyderabad 500007, Telangana State, India
| | - Bhima Bhukya
- Centre for Microbial and Fermentation Technology, Department of Microbiology, University College of Science, Osmania University, Hyderabad 500007, Telangana State, India
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Valorization of corn cobs for xylanase production by Aspergillus flavus AW1 and its application in the production of antioxidant oligosaccharides and removal of food stain. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2022.102311] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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Rastogi M, Shrivastava S, Shukla P. Bioprospecting of xylanase producing fungal strains: Multilocus phylogenetic analysis and enzyme activity profiling. J Basic Microbiol 2021; 62:150-161. [PMID: 34783043 DOI: 10.1002/jobm.202100408] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 10/23/2021] [Accepted: 10/31/2021] [Indexed: 11/07/2022]
Abstract
The study aims to explore potential xylanase-producing indigenous fungi isolated from soil and vegetable wastes containing plant degraded matter, reporting multilocus phylogenetic analysis and xylanase enzyme activity from selective strains. Four potential xylanolytic fungi were identified through distinct primary and secondary screening of 294 isolates obtained from the samples. Morphological characterization and multigene analysis (ITS rDNA, 18S rDNA, LSU rDNA, β-tubulin, and actin gene) confirmed them as Aspergillus sp. AUMS56, Aspergillus tubingensis AUMS60 and AUMS64, and Aspergillus fumigatus AUKEMS24; achieving crude xylanase activities (through submerged fermentation using corn cobs) of 18.9, 32.29, 30.68, and 15.82 U ml-1 , respectively. AUMS60 and AUMS64 (forming lineage with A. tubingensis and Aspergillus niger in the same phylogroup with 100% Bayesian posterior probability support) secreted single xylanase (Xyn60; 36 kDa) and multiple xylanases (Xyn64A and Xyn64B; 33.4 and 19.8 kDa) respectively, having pH optima of 6.0 and exhibiting maximal activity at 60°C. These enzymes were highly stable at 40°C (120 h) and retained more than 70% activity at 50°C and at pH 5-6 (upon 72 h incubation). Our analysis suggested these enzymes to be endoxylanases demonstrating substrate hydrolysis within 15 min of reaction and maximum efficiency of xylanases from AUMS60 and AUMS64 achieving 51.1% (13 h) and 52.2% (24 h) saccharification, respectively. They also showed enhanced catalytic activity with various cations. Based on our investigation on xylan hydrolysis, we believe that these xylanases may find significant industrial applications as they have a real potential of working as a bio-catalytic cocktail (patent file number: IN E1/38213/2020-DEL) for the enhanced saccharification of lignocelluloses.
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Affiliation(s)
- Meenal Rastogi
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida, Uttar Pradesh, India
| | - Smriti Shrivastava
- Amity Institute of Biotechnology, Amity University Uttar Pradesh, Noida, Uttar Pradesh, India
| | - Pratyoosh Shukla
- School of Biotechnology, Institute of Science, Banaras Hindu University, Varanasi, Uttar Pradesh, India.,Enzyme Technology and Protein Bioinformatics Laboratory, Department of Microbiology, Maharshi Dayanand University, Rohtak, Haryana, India
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Multi-efficient thermostable endoxylanase from Bacillus velezensis AG20 and its production of xylooligosaccharides as efficient prebiotics with anticancer activity. Process Biochem 2021. [DOI: 10.1016/j.procbio.2021.06.011] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Giovannoni M, Larini I, Scafati V, Scortica A, Compri M, Pontiggia D, Zapparoli G, Vitulo N, Benedetti M, Mattei B. A novel Penicillium sumatraense isolate reveals an arsenal of degrading enzymes exploitable in algal bio-refinery processes. BIOTECHNOLOGY FOR BIOFUELS 2021; 14:180. [PMID: 34517884 PMCID: PMC8438893 DOI: 10.1186/s13068-021-02030-9] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/03/2021] [Accepted: 08/30/2021] [Indexed: 05/16/2023]
Abstract
BACKGROUND Microalgae are coming to the spotlight due to their potential applications in a wide number of fields ranging from the biofuel to the pharmaceutical sector. However, several factors such as low productivity, expensive harvesting procedures and difficult metabolite extractability limit their full utilization at industrial scale. Similarly to the successful employment of enzymatic arsenals from lignocellulolytic fungi to convert lignocellulose into fermentable sugars for bioethanol production, specific algalytic formulations could be used to improve the extractability of lipids from microalgae to produce biodiesel. Currently, the research areas related to algivorous organisms, algal saprophytes and the enzymes responsible for the hydrolysis of algal cell wall are still little explored. RESULTS Here, an algal trap method for capturing actively growing microorganisms was successfully used to isolate a filamentous fungus, that was identified by whole-genome sequencing, assembly and annotation as a novel Penicillium sumatraense isolate. The fungus, classified as P. sumatraense AQ67100, was able to assimilate heat-killed Chlorella vulgaris cells by an enzymatic arsenal composed of proteases such as dipeptidyl- and amino-peptidases, β-1,3-glucanases and glycosidases including α- and β-glucosidases, β-glucuronidase, α-mannosidases and β-galactosidases. The treatment of C. vulgaris with the filtrate from P. sumatraense AQ67100 increased the release of chlorophylls and lipids from the algal cells by 42.6 and 48.9%, respectively. CONCLUSIONS The improved lipid extractability from C. vulgaris biomass treated with the fungal filtrate highlighted the potential of algal saprophytes in the bioprocessing of microalgae, posing the basis for the sustainable transformation of algal metabolites into biofuel-related compounds.
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Affiliation(s)
- M Giovannoni
- Department of Life, Health and Environmental Sciences, University of L'Aquila, 67100, L'Aquila, Italy
| | - I Larini
- Department of Biotechnology, University of Verona, 37134, Verona, Italy
| | - V Scafati
- Department of Life, Health and Environmental Sciences, University of L'Aquila, 67100, L'Aquila, Italy
| | - A Scortica
- Department of Life, Health and Environmental Sciences, University of L'Aquila, 67100, L'Aquila, Italy
| | - M Compri
- Department of Biotechnology, University of Verona, 37134, Verona, Italy
| | - D Pontiggia
- Department of Biology and Biotechnology "Charles Darwin", Sapienza University of Rome, 00185, Rome, Italy
| | - G Zapparoli
- Department of Biotechnology, University of Verona, 37134, Verona, Italy
| | - N Vitulo
- Department of Biotechnology, University of Verona, 37134, Verona, Italy
| | - M Benedetti
- Department of Life, Health and Environmental Sciences, University of L'Aquila, 67100, L'Aquila, Italy.
| | - B Mattei
- Department of Life, Health and Environmental Sciences, University of L'Aquila, 67100, L'Aquila, Italy
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Matrawy AA, Khalil AI, Marey HS, Embaby AM. Use of Wheat Straw for Value-Added Product Xylanase by Penicillium chrysogenum Strain A3 DSM105774. J Fungi (Basel) 2021; 7:jof7090696. [PMID: 34575734 PMCID: PMC8472069 DOI: 10.3390/jof7090696] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2021] [Revised: 08/19/2021] [Accepted: 08/20/2021] [Indexed: 11/16/2022] Open
Abstract
The present work highlights the valorization of the bulky recalcitrant lignocellulose byproduct wheat straw (WS) for the enhanced production of value-added xylanase by the locally sourced novel Penicillium chrysogenum strain A3 DSM105774 for the first time. The optimized production of xylanase by submerged state of fermentation of WS was achieved using a three-step statistical and sequential approach: one factor at a time (OFAT), Plackett–Burman design (PBD), and Box Behnken design (BBD). Incubation temperature (30 °C), WS, and ammonium sulphate were the key determinants prompting xylanase production; inferred from OFAT. The WS concentration (%(w/v)), yeast extract concentration (%(w/v)), and initial pH of the production medium imposed significant effects (p ≤ 0.05) on the produced xylanase, realized from PBD. The predicted levels of WS concentration, initial pH of the production medium, and yeast extract concentration provoking the ultimate xylanase levels (53.7 U/mL) with an 8.95-fold enhancement, localized by the estimated ridge of the steepest ascent of the ridge analysis path, were 3.8% (w/v), 5.1, and 0.098% (w/v), respectively; 94.7% lab validation. The current data underpin the up-scaling of xylanase production using this eco-friendly, cheap, and robust methodology for the valorization of WS into the value-added product xylanase.
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Affiliation(s)
- Amira A. Matrawy
- Environmental Studies Department, Institute of Graduate Studies and Research, Alexandria University, Alexandria 21526, Egypt; (A.A.M.); (A.I.K.); (H.S.M.)
| | - Ahmed I. Khalil
- Environmental Studies Department, Institute of Graduate Studies and Research, Alexandria University, Alexandria 21526, Egypt; (A.A.M.); (A.I.K.); (H.S.M.)
| | - Heba S. Marey
- Environmental Studies Department, Institute of Graduate Studies and Research, Alexandria University, Alexandria 21526, Egypt; (A.A.M.); (A.I.K.); (H.S.M.)
| | - Amira M. Embaby
- Biotechnology Department, Institute of Graduate Studies and Research, Alexandria University, Alexandria 21526, Egypt
- Correspondence:
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Wang J, Gao Z, Qian Y, Hu X, Li G, Fu F, Guo J, Shan Y. Citrus Segment Degradation Potential, Enzyme Safety Evaluation, and Whole Genome Sequence of Aspergillus aculeatus Strain ZC-1005. Front Microbiol 2021; 12:671200. [PMID: 34489880 PMCID: PMC8417811 DOI: 10.3389/fmicb.2021.671200] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 07/29/2021] [Indexed: 11/13/2022] Open
Abstract
Aspergillus aculeatus ZC-1005 (ZC-1005 was used as the abbreviation of this strain) is a hemicellulase-producing strain isolated from rotten citrus rind buried in the soil. Our previous study has shown its biochemical properties including high xylanase activity, mannanase activity, and degradation reaction with citrus mesocarp. In this study, we focused more on the enzyme safety evaluation and the genome sequencing via PacBio and Illumina platforms. High biological safety of the crude enzymes of ZC-1005 has been proven by the acute oral toxicity test, sub-chronic toxicity test, micronucleus test, and sperm malformation test. The genome of ZC-1005 had a GC content of 52.53%, with a size of 35,458,484 bp, and encoded 10,147 genes. Strain ZC-1005 harbored 269 glycosyl hydrolase (GH) genes of 64 families. The fungus produces cellulose-acting (GH3, GH5, GH12, and GH1) and hemicellulose-acting enzymes (GH16, GH31, GH2, and GH92). In genome annotation, we paid more attention to the genes encoding xylanase, such as gene 01512, gene 05833, gene 05469, gene 07781, gene 08432, gene 09042, gene 08008, and gene 09694. The collaboration between complete genome information and the degradation test confirmed that ZC-1005 could degrade cellulose and xylan. Our results showed that the citrus enzymatic decapsulation technology was efficacious and safe for canned citrus product processing, which may also solve the industrial waste problem. Therefore, ZC-1005 and the crude enzyme secreted from the strain were very promising to be used in the citrus processing industry.
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Affiliation(s)
- Jieyi Wang
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Zhipeng Gao
- College of Animal Science and Technology, Hunan Agricultural University, Changsha, China
| | - Yujiao Qian
- Longping Branch, Graduate School of Hunan University, Changsha, China
| | - Xiao Hu
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
| | - Gaoyang Li
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
| | - Fuhua Fu
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
| | - Jiajing Guo
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
| | - Yang Shan
- Hunan Agriculture Product Processing Institute, International Joint Laboratory on Fruits and Vegetables Processing, Quality and Safety, Hunan Key Laboratory of Fruits and Vegetables Storage, Processing, Quality and Safety, Hunan Academy of Agricultural Sciences, Changsha, China
- Longping Branch, Graduate School of Hunan University, Changsha, China
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