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Elegbede JA, Lateef A, Gueguim-Kana EB, Beukes LS, Matyumza N. Multi-functional xylanase from Aspergillus sydowii: biosynthesis of nanoconjugates, optimization by Taguchi approach and biodeinking potential. Prep Biochem Biotechnol 2024; 54:622-636. [PMID: 37772603 DOI: 10.1080/10826068.2023.2261037] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
The search for effective production of xylanase which is an important industrial enzyme led to the present study that explored xylanase production by Aspergillus sydowii SF through Taguchi optimization that incorporated nanoconjugates in submerged fermentation. Calcium and zinc oxide nanoconjugates biosynthesized by xylanase were characterized via UV-Vis spectroscopy, Fourier transform infrared spectroscopy, and Transmission electron microscopy (TEM). The xylanase-mediated calcium oxide and zinc oxide nanoconjugates with λmax of 374 and 316 nm, respectively, and were 5.32-17.69 nm in size. Xylanase production was improved by 2.90-10.58 folds (64.24-234.15 U/mL) through Taguchi optimization cum nanoconjugates, and ANOVA showed that nanoconjugates contributed 13.62-65.97% to improved production. The xylanase had up to 88.38% deinking activity, with 49.60-84.64% removal of blue color. The remarkable xylanase production, its use to biosynthesize nanoconjugates and biodeinking potentials contribute to the development of versatile biocatalysts with applications in biotechnology, nanotechnology, and sustainable paper production. To the best of our knowledge, this represents the first report of xylanase for biosynthesis of calcium oxide and zinc oxide nanoparticles, as well as nanosupplementation to induce xylanase production, which can open new vista in bioprocess optimization.
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Affiliation(s)
- J A Elegbede
- Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - A Lateef
- Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
- Nanotechnology Research Group (NANO+), Laboratory of Industrial Microbiology and Nanobiotechnology, Department of Pure and Applied Biology, Ladoke Akintola University of Technology, Ogbomoso, Nigeria
| | - E B Gueguim-Kana
- Department of Microbiology, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
| | - L S Beukes
- Department of Microbiology, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
| | - N Matyumza
- Microscopy and Microanalysis Unit, School of Life Sciences, University of KwaZulu-Natal, Scottsville, PieterMaritzburg, South Africa
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Han S, An X, He X, Ren X, Sichone J, Wu X, Zhang Y, Wang H, Sun F. Temporal Dynamics of Fungal Communities in Alkali-Treated Round Bamboo Deterioration under Natural Weathering. Microorganisms 2024; 12:858. [PMID: 38792687 PMCID: PMC11124218 DOI: 10.3390/microorganisms12050858] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/18/2024] [Accepted: 04/19/2024] [Indexed: 05/26/2024] Open
Abstract
Microbes naturally inhabit bamboo-based materials in outdoor environments, sequentially contributing to their deterioration. Fungi play a significant role in deterioration, especially in environments with abundant water and favorable temperatures. Alkali treatment is often employed in the pretreatment of round bamboo to change its natural elastic and aesthetic behaviors. However, little research has investigated the structure and dynamics of fungal communities on alkali-treated round bamboo during natural deterioration. In this work, high-throughput sequencing and multiple characterization methods were used to disclose the fungal community succession and characteristic alterations of alkali-treated round bamboo in both roofed and unroofed habitats throughout a 13-week deterioration period. In total, 192 fungal amplicon sequence variants (ASVs) from six phyla were identified. The fungal community richness of roofed bamboo samples declined, whereas that of unroofed bamboo samples increased during deterioration. The phyla Ascomycota and Basidiomycota exhibited dominance during the entire deterioration process in two distinct environments, and the relative abundance of them combined was more than 99%. A distinct shift in fungal communities from Basidiomycota dominant in the early stage to Ascomycota dominant in the late stage was observed, which may be attributed to the increase of moisture and temperature during succession and the effect of alkali treatment. Among all environmental factors, temperature contributed most to the variation in the fungal community. The surface of round bamboo underwent continuous destruction from fungi and environmental factors. The total amount of cell wall components in bamboo epidermis in both roofed and unroofed conditions presented a descending trend. The content of hemicellulose declined sharply by 8.3% and 11.1% under roofed and unroofed environments after 9 weeks of deterioration. In addition, the contact angle was reduced throughout the deterioration process in both roofed and unroofed samples, which might be attributed to wax layer removal and lignin degradation. This study provides theoretical support for the protection of round bamboo under natural weathering.
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Affiliation(s)
- Shuaibo Han
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
- Microbes and Insects Control Institute of Bio-Based Materials, Zhejiang A&F University, Hangzhou 311300, China
| | - Xiaojiao An
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
| | - Xiaolong He
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
| | - Xin Ren
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
| | - John Sichone
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
| | - Xinxing Wu
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
- Microbes and Insects Control Institute of Bio-Based Materials, Zhejiang A&F University, Hangzhou 311300, China
| | - Yan Zhang
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
- Microbes and Insects Control Institute of Bio-Based Materials, Zhejiang A&F University, Hangzhou 311300, China
| | - Hui Wang
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
- Microbes and Insects Control Institute of Bio-Based Materials, Zhejiang A&F University, Hangzhou 311300, China
| | - Fangli Sun
- National Engineering & Technology Research Center of Wood-Based Resources Comprehensive Utilization, School of Chemical and Materials Engineering, Zhejiang A&F University, Hangzhou 311300, China; (X.A.); (X.H.); (X.R.); (J.S.); (X.W.); (Y.Z.); (H.W.)
- Microbes and Insects Control Institute of Bio-Based Materials, Zhejiang A&F University, Hangzhou 311300, China
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Feigl V, Medgyes-Horváth A, Kari A, Török Á, Bombolya N, Berkl Z, Farkas É, Fekete-Kertész I. The potential of Hungarian bauxite residue isolates for biotechnological applications. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2024; 41:e00825. [PMID: 38225962 PMCID: PMC10788403 DOI: 10.1016/j.btre.2023.e00825] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Revised: 12/14/2023] [Accepted: 12/19/2023] [Indexed: 01/17/2024]
Abstract
Bauxite residue (red mud) is considered an extremely alkaline and salty environment for the biota. We present the first attempt to isolate, identify and characterise microbes from Hungarian bauxite residues. Four identified bacterial strains belonged to the Bacilli class, one each to the Actinomycetia, Gammaproteobacteria, and Betaproteobacteria classes, and two to the Alphaproteobacteria class. All three identified fungi strains belonged to the Ascomycota division. Most strains tolerated pH 8-10 and salt content at 5-7% NaCl concentration. Alkalihalobacillus pseudofirmus BRHUB7 and Robertmurraya beringensis BRHUB9 can be considered halophilic and alkalitolerant. Priestia aryabhattai BRHUB2, Penicillium chrysogenum BRHUF1 and Aspergillus sp. BRHUF2 are halo- and alkalitolerant strains. Most strains produced siderophores and extracellular polymeric substances, could mobilise phosphorous, and were cellulose degraders. These strains and their enzymes are possible candidates for biotechnological applications in processes requiring extreme conditions, e.g. bioleaching of critical raw materials and rehabilitation of alkaline waste deposits.
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Affiliation(s)
- Viktória Feigl
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Anna Medgyes-Horváth
- ELTE Eötvös Loránd University, Department of Physics of Complex Systems, Pázmány P. s. 1A, Budapest 1117, Hungary
| | - András Kari
- ELTE Eötvös Loránd University, Department of Microbiology, Pázmány P. s. 1A, Budapest 1117, Hungary
| | - Ádám Török
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Nelli Bombolya
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Zsófia Berkl
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
| | - Éva Farkas
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
- Norwegian Institute of Bioeconomy Research (NIBIO), Division of Environment and Natural Resources, Department of Biogeochemistry and Soil Quality, Høgskoleveien 7, 1432 Ås, Norway
| | - Ildikó Fekete-Kertész
- Budapest University of Technology and Economics, Faculty of Chemical Technology and Biotechnology, Department of Applied Biotechnology and Food Science, Műegyetem Rkp 3., Budapest 1111, Hungary
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Zhang J, Qin Y, Wang Q, Liu S, Zhou J, He B, Liang X, Xian L, Wu J. Gene cloning, expression, and characterization of two endo-xylanases from Bacillus velezensis and Streptomyces rochei, and their application in xylooligosaccharide production. Front Microbiol 2023; 14:1292726. [PMID: 38173671 PMCID: PMC10762781 DOI: 10.3389/fmicb.2023.1292726] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 11/21/2023] [Indexed: 01/05/2024] Open
Abstract
Endo-xylanase hydrolyzing xylan in cellulosic residues releasing xylobiose as the major product at neutral pH are desirable in the substitute sweeteners industry. In this study, two endo-xylanases were obtained from Streptomyces rochei and Bacillus velezensis. SrocXyn10 showed the highest identity of 77.22%, with a reported endo-xylanase. The optimum reaction temperature and pH of rSrocXyn10-Ec were pH 7.0 and 60°C, with remarkable stability at 45°C or pHs ranging from 4.5 to 11.0. rBvelXyn11-Ec was most active at pH 6.0 and 50°C, and was stable at 35°C or pH 3.5 to 10.5. Both rSrocXyn10-Ec and rBvelXyn11-Ec showed specific enzyme activities on wheat arabinoxylan (685.83 ± 13.82 and 2809.89 ± 21.26 U/mg, respectively), with no enzyme activity on non-xylan substrates. The Vmax of rSrocXyn10-Ec and rBvelXyn11-Ec were 467.86 U mg-1 and 3067.68 U mg-1, respectively. The determined Km values of rSrocXyn10-Ec and rBvelXyn11-Ec were 3.08 g L-1 and 1.45 g L-1, respectively. The predominant product of the hydrolysis of alkaline extracts from bagasse, corncob, and bamboo by rSrocXyn10-Ec and rBvelXyn11-Ec were xylooligosaccharides. Interestingly, the xylobiose content in hydrolysates by rSrocXyn10-Ec was approximately 80%, which is higher than most reported endo-xylanases. rSrocXyn10-Ec and rBvelXyn11-Ec could be excellent candidates to produce xylooligosaccharides at neutral/near-neutral pHs. rSrocXyn10-Ec also has potential value in the production of xylobiose as a substitute sweetener.
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Affiliation(s)
- Jing Zhang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Yan Qin
- National Key Laboratory of Non-food Biomass Energy Technology, Guangxi Academy of Sciences, Nanning, China
| | - Qingyan Wang
- National Key Laboratory of Non-food Biomass Energy Technology, Guangxi Academy of Sciences, Nanning, China
| | - Sijia Liu
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Jin Zhou
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Baoxiang He
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Xinquan Liang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, China
| | - Liang Xian
- National Key Laboratory of Non-food Biomass Energy Technology, Guangxi Academy of Sciences, Nanning, China
| | - Junhua Wu
- National Key Laboratory of Non-food Biomass Energy Technology, Guangxi Academy of Sciences, Nanning, China
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Ali NS, Huang F, Qin W, Yang TC. A high throughput screening process and quick isolation of novel lignin-degrading microbes from large number of natural biomasses. BIOTECHNOLOGY REPORTS (AMSTERDAM, NETHERLANDS) 2023; 39:e00809. [PMID: 37583477 PMCID: PMC10423689 DOI: 10.1016/j.btre.2023.e00809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/15/2023] [Revised: 07/14/2023] [Accepted: 07/26/2023] [Indexed: 08/17/2023]
Abstract
High throughput screening approaches can significantly speed up the identification of novel enzymes from natural microbial consortiums. A two-step high throughput screening process was proposed and explored to screen lignin-degrading microorganisms. By employing this modified culture enrichment method and screening based on enzyme activity, a total of 82 bacterial and 46 fungal strains were isolated from fifty decayed wood samples (100 liquid cultures) collected from the banks of the Ottawa River in Canada. Among them, ten bacterial and five fungal strains were selected and identified based on their high laccase activities by 16S rDNA and ITS gene sequencing, respectively. The study identified bacterial strains from various genera including Serratia, Enterobacter, Raoultella, and Bacillus, along with fungal counterparts including Mucor, Trametes, Conifera and Aspergillus. Moreover, Aspergillus sydowii (AORF21), Mucor sp. (AORF43), Trametes versicolor (AORF3) and Enterobacter sp. (AORB55) exhibited xylanase and β- glucanase activities in addition to laccase production. The proposed approach allowed for the quick identification of promising consortia and enhanced the chance of isolating desired strains based on desired enzyme activities. This method is not limited to lignocellulose and lignin-degrading microorganisms but can be applied to identify novel microbial strains and enzymes from different natural samples.
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Affiliation(s)
- Nadia Sufdar Ali
- Department of Biology, Lakehead University, Thunder Bay, ON, Canada
- Aquatic and Crop Resource Development Research Centre, National Research Council, Ottawa, ON, Canada
| | - Fang Huang
- Aquatic and Crop Resource Development Research Centre, National Research Council, Ottawa, ON, Canada
| | - Wensheng Qin
- Department of Biology, Lakehead University, Thunder Bay, ON, Canada
| | - Trent Chunzhong Yang
- Aquatic and Crop Resource Development Research Centre, National Research Council, Ottawa, ON, Canada
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Ibrahim SRM, Mohamed SGA, Alsaadi BH, Althubyani MM, Awari ZI, Hussein HGA, Aljohani AA, Albasri JF, Faraj SA, Mohamed GA. Secondary Metabolites, Biological Activities, and Industrial and Biotechnological Importance of Aspergillus sydowii. Mar Drugs 2023; 21:441. [PMID: 37623723 PMCID: PMC10455642 DOI: 10.3390/md21080441] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2023] [Revised: 07/29/2023] [Accepted: 08/02/2023] [Indexed: 08/26/2023] Open
Abstract
Marine-derived fungi are renowned as a source of astonishingly significant and synthetically appealing metabolites that are proven as new lead chemicals for chemical, pharmaceutical, and agricultural fields. Aspergillus sydowii is a saprotrophic, ubiquitous, and halophilic fungus that is commonly found in different marine ecosystems. This fungus can cause aspergillosis in sea fan corals leading to sea fan mortality with subsequent changes in coral community structure. Interestingly, A. sydowi is a prolific source of distinct and structurally varied metabolites such as alkaloids, xanthones, terpenes, anthraquinones, sterols, diphenyl ethers, pyrones, cyclopentenones, and polyketides with a range of bioactivities. A. sydowii has capacity to produce various enzymes with marked industrial and biotechnological potential, including α-amylases, lipases, xylanases, cellulases, keratinases, and tannases. Also, this fungus has the capacity for bioremediation as well as the biocatalysis of various chemical reactions. The current work aimed at focusing on the bright side of this fungus. In this review, published studies on isolated metabolites from A. sydowii, including their structures, biological functions, and biosynthesis, as well as the biotechnological and industrial significance of this fungus, were highlighted. More than 245 compounds were described in the current review with 134 references published within the period from 1975 to June 2023.
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Affiliation(s)
- Sabrin R. M. Ibrahim
- Preparatory Year Program, Department of Chemistry, Batterjee Medical College, Jeddah 21442, Saudi Arabia
- Department of Pharmacognosy, Faculty of Pharmacy, Assiut University, Assiut 71526, Egypt
| | | | - Baiaan H. Alsaadi
- Department of Clinical Service, Pharmaceutical Care Services, King Salman Medical City, MOH, Al Madinah Al Munawwarah 11176, Saudi Arabia; (B.H.A.); (M.M.A.)
| | - Maryam M. Althubyani
- Department of Clinical Service, Pharmaceutical Care Services, King Salman Medical City, MOH, Al Madinah Al Munawwarah 11176, Saudi Arabia; (B.H.A.); (M.M.A.)
| | - Zainab I. Awari
- Pharmaceutical Care Services, King Salman Medical City, MOH, Al Madinah Al Munawwarah 11176, Saudi Arabia;
| | - Hazem G. A. Hussein
- Preparatory Year Program, Batterjee Medical College, Jeddah 21442, Saudi Arabia;
| | - Abrar A. Aljohani
- Pharmaceutical Care Services, Medina Cardiac Center, MOH, Al Madinah Al Munawwarah 11176, Saudi Arabia;
| | - Jumanah Faisal Albasri
- Pharmacy Department, Home Health Care, MOH, Al Madinah Al Munawwarah 11176, Saudi Arabia;
| | - Salha Atiah Faraj
- Pharmacy Department, King Salman Medical City, MOH, Almadinah Almunawarah 11176, Saudi Arabia;
| | - Gamal A. Mohamed
- Department of Natural Products and Alternative Medicine, Faculty of Pharmacy, King Abdulaziz University, Jeddah 21589, Saudi Arabia;
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Jiang JP, Liu X, Liao YF, Shan J, Zhu YP, Liu CH. Genomic insights into Aspergillus sydowii 29R-4-F02: unraveling adaptive mechanisms in subseafloor coal-bearing sediment environments. Front Microbiol 2023; 14:1216714. [PMID: 37455735 PMCID: PMC10339353 DOI: 10.3389/fmicb.2023.1216714] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Accepted: 06/09/2023] [Indexed: 07/18/2023] Open
Abstract
Introduction Aspergillussydowii is an important filamentous fungus that inhabits diverse environments. However, investigations on the biology and genetics of A. sydowii in subseafloor sediments remain limited. Methods Here, we performed de novo sequencing and assembly of the A. sydowii 29R-4-F02 genome, an isolate obtained from approximately 2.4 km deep, 20-million-year-old coal-bearing sediments beneath the seafloor by employing the Nanopore sequencing platform. Results and Discussion The generated genome was 37.19 Mb with GC content of 50.05%. The final assembly consisted of 11 contigs with N50 of 4.6 Mb, encoding 12,488 putative genes. Notably, the subseafloor strain 29R-4-F02 showed a higher number of carbohydrate-active enzymes (CAZymes) and distinct genes related to vesicular fusion and autophagy compared to the terrestrial strain CBS593.65. Furthermore, 257 positively selected genes, including those involved in DNA repair and CAZymes were identified in subseafloor strain 29R-4-F02. These findings suggest that A. sydowii possesses a unique genetic repertoire enabling its survival in the extreme subseafloor environments over tens of millions of years.
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Affiliation(s)
- Jun-Peng Jiang
- State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China
| | - Xuan Liu
- State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China
| | - Yi-Fan Liao
- State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China
| | - Jun Shan
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Yu-Ping Zhu
- State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China
| | - Chang-Hong Liu
- State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing, China
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Quintero-García OJ, Pérez-Soler H, Amezcua-Allieri MA. Enzymatic Treatments for Biosolids: An Outlook and Recent Trends. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:4804. [PMID: 36981713 PMCID: PMC10049663 DOI: 10.3390/ijerph20064804] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2023] [Revised: 02/28/2023] [Accepted: 03/04/2023] [Indexed: 06/18/2023]
Abstract
Wastewaters are nutrient-rich organic materials containing significant concentrations of different nutrients, dissolved and particulate matter, microorganisms, solids, heavy metals, and organic pollutants, including aromatic xenobiotics. This variety makes wastewater treatment a technological challenge. As a result of wastewater treatment, biosolids are generated. Biosolids, commonly called sewage sludge, result from treating and processing wastewater residuals. Increased biosolids, or activated sludge, from wastewater treatment is a major environmental and social problem. Therefore, sustainable and energy-efficient wastewater treatment systems must address the water crisis and environmental deterioration. Although research on wastewater has received increasing attention worldwide, the significance of biosolids treatments and valorization is still poorly understood in terms of obtaining value-added products. Hence, in this review, we established some leading technologies (physical, chemical, and biological) for biosolids pretreatment. Later, the research focuses on natural treatment by fungal enzymes to end with lignocellulosic materials and xenobiotic compounds (polyaromatic hydrocarbons) as a carbon source to obtain biobased chemicals. Finally, this review discussed some recent trends and promising renewable resources within the biorefinery approach for bio-waste conversion to value-added by-products.
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Affiliation(s)
- Omar J. Quintero-García
- Nanotechnology Division, CINVESTAV-IPN, Avenida Instituto Politécnico Nacional 2508, San Pedro Zacatenco, Mexico City 07360, Mexico
| | - Heilyn Pérez-Soler
- Nanotechnology Division, CINVESTAV-IPN, Avenida Instituto Politécnico Nacional 2508, San Pedro Zacatenco, Mexico City 07360, Mexico
| | - Myriam A. Amezcua-Allieri
- Biomass Conversion Division, Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas 152, San Bartolo Atepehuacan, Mexico City 07730, Mexico
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Asitok A, Ekpenyong M, Amenaghawon A, Akwagiobe E, Asuquo M, Rao A, Ubi D, Iheanacho J, Etiosa J, Antai A, Essien J, Antai S. Production, characterization and techno-economic evaluation of Aspergillus fusant L-asparaginase. AMB Express 2023; 13:2. [PMID: 36609612 PMCID: PMC9823191 DOI: 10.1186/s13568-022-01505-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Accepted: 12/21/2022] [Indexed: 01/07/2023] Open
Abstract
Protoplast fusion is one of the most reliable methods of introducing desirable traits into industrially-promising fungal strains. It harnesses the entire genomic repertoire of fusing microorganisms by routing the natural barrier and genetic incompatibility between them. In the present study, the axenic culture of a thermo-halotolerant strain of Aspergillus candidus (Asp-C) produced an anti-leukemic L-asparaginase (L-ASNase) while a xylan-degrading strain of Aspergillus sydowii (Asp-S) produced the acrylamide-reduction type. Protoplast fusion of the wild strains generated Fusant-06 with improved anti-leukemic and acrylamide reduction potentials. Submerged fed-batch fermentation was preferred to batch and continuous modes on the basis of impressive techno-economics. Fusant-06 L-ASNase was purified by PEG/Na+ citrate aqueous two-phase system (ATPS) to 146.21-fold and global sensitivity analysis report revealed polymer molecular weight and citrate concentration as major determinants of yield and purification factor, respectively. The enzyme was characterized by molecular weight, amino acid profile, activity and stability to chemical agents. Michaelis-Menten kinetics, evaluated under optimum conditions gave Km, Vmax, Kcat, and Kcat/Km as 6.67 × 10-5 M, 1666.67 µmolmin-1 mg-1 protein, 3.88 × 104 min-1 and 5.81 × 108 M-1.min-1 respectively. In-vitro cytotoxicity of HL-60 cell lines by Fusant-06 L-ASNase improved significantly from their respective wild strains. Stability of Fusant-06 L-ASNase over a wide range of pH, temperature and NaCl concentration, coupled with its micromolar Km value, confers commercial and therapeutic value on the product. Free-radical scavenging and acrylamide reduction activities were intermediate and the conferred thermo-halo-stability could be exploited for sustainable clinical and food industry applications.
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Affiliation(s)
- Atim Asitok
- grid.413097.80000 0001 0291 6387Environmental Microbiology and Biotechnology Unit, Department of Microbiology, University of Calabar, Calabar, Nigeria ,grid.413097.80000 0001 0291 6387University of Calabar Collection of Microorganisms (UCCM), Department of Microbiology, University of Calabar, Calabar, Nigeria
| | - Maurice Ekpenyong
- grid.413097.80000 0001 0291 6387Environmental Microbiology and Biotechnology Unit, Department of Microbiology, University of Calabar, Calabar, Nigeria ,grid.413097.80000 0001 0291 6387University of Calabar Collection of Microorganisms (UCCM), Department of Microbiology, University of Calabar, Calabar, Nigeria
| | - Andrew Amenaghawon
- grid.413068.80000 0001 2218 219XDepartment of Chemical Engineering, University of Benin, Benin City, Nigeria
| | - Ernest Akwagiobe
- grid.413097.80000 0001 0291 6387Industrial Microbiology and Biotechnology Unit, Department of Microbiology, Faculty of Biological Sciences, University of Calabar, Calabar, Nigeria
| | - Marcus Asuquo
- grid.413097.80000 0001 0291 6387Department of Hematology, University of Calabar Teaching Hospital, Calabar, Nigeria
| | - Anitha Rao
- grid.413097.80000 0001 0291 6387Industrial Microbiology and Biotechnology Unit, Department of Microbiology, Faculty of Biological Sciences, University of Calabar, Calabar, Nigeria
| | - David Ubi
- grid.413097.80000 0001 0291 6387Industrial Microbiology and Biotechnology Unit, Department of Microbiology, Faculty of Biological Sciences, University of Calabar, Calabar, Nigeria
| | - Juliet Iheanacho
- grid.413097.80000 0001 0291 6387Environmental Microbiology and Biotechnology Unit, Department of Microbiology, University of Calabar, Calabar, Nigeria
| | - Joyce Etiosa
- grid.413097.80000 0001 0291 6387Environmental Microbiology and Biotechnology Unit, Department of Microbiology, University of Calabar, Calabar, Nigeria
| | - Agnes Antai
- grid.413097.80000 0001 0291 6387Department of Economics, Faculty of Social Sciences, University of Calabar, Calabar, Nigeria
| | - Joseph Essien
- grid.412960.80000 0000 9156 2260Department of Microbiology, Faculty of Science, University of Uyo, Uyo, Nigeria
| | - Sylvester Antai
- grid.413097.80000 0001 0291 6387Environmental Microbiology and Biotechnology Unit, Department of Microbiology, University of Calabar, Calabar, Nigeria ,grid.413097.80000 0001 0291 6387University of Calabar Collection of Microorganisms (UCCM), Department of Microbiology, University of Calabar, Calabar, Nigeria
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10
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Long-Term Antimicrobial Performance of Textiles Coated with ZnO and TiO 2 Nanoparticles in a Tropical Climate. J Funct Biomater 2022; 13:jfb13040233. [PMID: 36412874 PMCID: PMC9680289 DOI: 10.3390/jfb13040233] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2022] [Revised: 11/04/2022] [Accepted: 11/06/2022] [Indexed: 11/11/2022] Open
Abstract
This paper reports the results of the large-scale field testing of composite materials with antibacterial properties in a tropical climate. The composite materials, based on a cotton fabric with a coating of metal oxide nanoparticles (TiO2 and/or ZnO), were produced using high-power ultrasonic treatment. The antibacterial properties of the materials were studied in laboratory tests on solid and liquid nutrient media using bacteria of different taxonomic groups (Escherichia coli, Chromobacterium violaceum, Pseudomonas chlororaphis). On solid media, the coatings were able to achieve a >50% decrease in the number of bacteria. The field tests were carried out in a tropical climate, at the Climate test station “Hoa Lac” (Hanoi city, Vietnam). The composite materials demonstrated long-term antibacterial activity in the tropical climate: the number of microorganisms remained within the range of 1−3% in comparison with the control sample for the duration of the experiment (3 months). Ten of the microorganisms that most frequently occurred on the surface of the coated textiles were identified. The bacteria were harmless, while the fungi were pathogenic and contributed to fabric deterioration. Tensile strength deterioration was also studied, with the fabrics coated with metal oxides demonstrating a better preservation of their mechanical characteristics over time, (there was a 42% tensile strength decrease for the reference non-coated sample and a 21% decrease for the sample with a ZnO + CTAB coating).
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11
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Martins M, Tramontina R, Squina FM, Dinamarco TM, Goldbeck R. Synergism for xylo-oligosaccharides, ρ-coumaric and ferulic acid production, and thermostability modulation of GH 62 α-l-arabinofuranosidase. BIOCATALYSIS AND AGRICULTURAL BIOTECHNOLOGY 2022. [DOI: 10.1016/j.bcab.2022.102469] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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12
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Géry A, Séguin V, Eldin de Pécoulas P, Bonhomme J, Garon D. Aspergilli series Versicolores: importance of species identification in the clinical setting. Crit Rev Microbiol 2022:1-14. [PMID: 35758008 DOI: 10.1080/1040841x.2022.2082267] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The moulds of the genus Aspergillus section Nidulantes series Versicolores are ubiquitous and particularly recurrent in indoor air. They are considered present in 70% of the bioaerosols to which we are exposed most of our time spent indoors. With the taxonomic revision proposed in 2012 and the discovery of four new species, the series Versicolores currently includes 18 species. These moulds, although considered as cryptic (except Aspergillus sydowii), are opportunistic pathogens that can exhibit increased minimal inhibitory concentrations to conventional antifungal agents. In this review, we discuss the ecology and clinical implications of each species belonging to the series Versicolores. This survey also highlights the lack of consideration for taxonomic revisions in clinical practice and in scientific studies which greatly limits the acquisition of specific knowledge on species belonging to the series Versicolores.
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Affiliation(s)
- Antoine Géry
- Unicaen and Unirouen, ToxEMAC-ABTE, Centre F. Baclesse, Normandie Univ, Caen, France
| | - Virginie Séguin
- Unicaen and Unirouen, ToxEMAC-ABTE, Centre F. Baclesse, Normandie Univ, Caen, France
| | | | - Julie Bonhomme
- Unicaen and Unirouen, ToxEMAC-ABTE, Centre F. Baclesse, Normandie Univ, Caen, France.,Department of Microbiology, Caen University Hospital, Caen, France
| | - David Garon
- Unicaen and Unirouen, ToxEMAC-ABTE, Centre F. Baclesse, Normandie Univ, Caen, France
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13
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Zhang R, Lin D, Zhang L, Zhan R, Wang S, Wang K. Molecular and Biochemical Analyses of a Novel Trifunctional Endoxylanase/Endoglucanase/Feruloyl Esterase from the Human Colonic Bacterium Bacteroides intestinalis DSM 17393. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022; 70:4044-4056. [PMID: 35316064 DOI: 10.1021/acs.jafc.2c01019] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
A novel enzyme Bi76 comprising GH10, E_set_Esterase_N, and CE1 modules was identified, with the highest homology (62.9%) with a bifunctional endoxylanase/feruloyl esterase among characterized enzymes. Interestingly, Bi76 hydrolyzed glucan substrates besides xylans and feruloylated substrates, suggesting that it is the first characterized trifunctional endoxylanase/endoglucanase/feruloyl esterase. Analyses of truncation variants revealed that GH10 and E_set_Esterase_N + CE1 modules encoded endoxylanase/endoglucanase and feruloyl esterase activities, respectively. Synergism analyses indicated that endoxylanase, α-l-arabinofuranosidase, and feruloyl esterase acted cooperatively in releasing ferulic acid (FA) and xylooligosaccharides from feruloylated arabinoxylan. The interdomain synergism of Bi76 overmatched the intermolecular synergism of TM1 and TM2. Importantly, Bi76 exhibited good capacity in producing FA, releasing 5.20, 4.38, 2.12, 1.35, 0.46, and 0.19 mg/g from corn bran, corn cob, wheat bran, corn stover, rice husk, and rice bran, respectively. This study expands the trifunctional endoxylanase/endoglucanase/feruloyl esterase repertoire and demonstrates the great potential of Bi76 in agricultural residue utilization.
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Affiliation(s)
- Ruiqin Zhang
- Research Center of Chinese Herbal Resource Science and Engineering, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
- Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education of the People's Republic of China, Guangzhou, Guangdong 510006, People's Republic of China
| | - Dongxia Lin
- Research Center of Chinese Herbal Resource Science and Engineering, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
- Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education of the People's Republic of China, Guangzhou, Guangdong 510006, People's Republic of China
| | - Liang Zhang
- Research Center of Chinese Herbal Resource Science and Engineering, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
- Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education of the People's Republic of China, Guangzhou, Guangdong 510006, People's Republic of China
| | - Ruoting Zhan
- Research Center of Chinese Herbal Resource Science and Engineering, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
- Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education of the People's Republic of China, Guangzhou, Guangdong 510006, People's Republic of China
| | - Sidi Wang
- College of Fundamental Medical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
| | - Kui Wang
- Research Center of Chinese Herbal Resource Science and Engineering, School of Pharmaceutical Sciences, Guangzhou University of Chinese Medicine, Guangzhou, Guangdong 510006, People's Republic of China
- Key Laboratory of Chinese Medicinal Resource from Lingnan (Guangzhou University of Chinese Medicine), Ministry of Education of the People's Republic of China, Guangzhou, Guangdong 510006, People's Republic of China
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14
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Jin M, Chen X, Gao M, Sun R, Tian D, Xiong Q, Wei J, Kalkhajeh YK, Gao H. Manganese promoted wheat straw decomposition by regulating microbial communities and enzyme activities. J Appl Microbiol 2021; 132:1079-1090. [PMID: 34424586 DOI: 10.1111/jam.15266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2021] [Revised: 08/19/2021] [Accepted: 08/20/2021] [Indexed: 12/01/2022]
Abstract
AIMS This study investigated the dose-effect of manganese (Mn) addition on wheat straw (WS) decomposition, and explored the potential mechanisms of Mn involved in the acceleration of WS decomposition in regards to the soil microbial communities and enzyme activities. METHODS AND RESULTS A 180-day incubation experiment was performed to examine the decomposition of WS under four Mn levels, that is, 0, 0.25, 1 and 2 mg g-1 . The effects of microbial communities and enzyme activities were evaluated using control (0 mg g-1 ) and Mn (0.25 mg g-1 ) treatments. Our results revealed that Mn (0.25 mg g-1 ) addition significantly increased WS decomposition, and enhanced the release of carbon and nitrogen. Optimal Mn addition (0.25 mg g-1 ) also caused significant increases in the activity of neutral xylanase (NEX), laccase (Lac), manganese peroxidase (MnP) and lignin peroxidase (LiP) within the incubation period. Mn (0.25 mg g-1 ) addition also enriched some operational taxonomic units (OTUs) that, in turn, had the potential ability to decompose crop straw, such as secreting lignocellulolytic enzymes. CONCLUSIONS Mn (0.25 mg g-1 ) could promote WS decomposition through enrichment of the microbial species involved in biomass decomposition, which enhanced the lignocellulose-degrading enzyme activity. SIGNIFICANCE AND IMPACT OF THE STUDY This study provides evidence for Mn to promote WS biodegradation after Mn application, opening new windows to improve the utilization efficiency of crop residues.
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Affiliation(s)
- M Jin
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - X Chen
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - M Gao
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - R Sun
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - D Tian
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - Q Xiong
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - J Wei
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - Y K Kalkhajeh
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
| | - H Gao
- Anhui Province Key Laboratory of Farmland Conservation and Pollution Prevention, School of Resources and Environment, Anhui Agricultural University, Hefei, China.,Research Centre of Phosphorous Highly Efficient Utilization and Water Environment Protection, Yangtze River Economic Zone, P.R. China
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