Understanding Biofilm Formation in Ecotoxicological Assays With Natural and Anthropogenic Particulates

Aggregation in experimental studies with microparticles: Experimental settings change particle size distribution during exposure

The ubiquitous occurrence of microplastics is raising broad concerns and motivating effect studies. In these studies, however, particle behaviour in the water and aggregation are rarely considered leading to contradictory results reported by different studies. Using an environmentally relevant experimental setup with Daphnia magna as a test organism, we investigated how experimental conditions affect particle aggregation and the aggregate heterogeneity in terms of the particle size distribution. The experimental factors considered were (1) exposure duration (48 h vs 120 h), (2) the total mass of suspended solids (0-10 mg/l) composed of natural mineral particles (kaolin) and microplastics, (3) the proportion of the microplastics in the particle suspension (0-10% by mass), (4) dissolved organic matter (DOM; 0 vs 20 mg agarose/l), and (5) presence of the test organism (0 and 5 daphnids/vial). We found that particle aggregation occurs within the first 48 h of incubation in all treatments, no substantial change in the aggregate heterogeneity is observed afterwards. The median aggregate size was ∼2-fold higher than the nominal average particle size of clay and microplastics in the stock suspensions used to prepare the experimental mixtures. The strongest positive driver of the aggregate size and heterogeneity was DOM, followed by the presence of daphnids and the concentration of the suspended solids in the system. Also, microplastics were found to facilitate aggregation, albeit they were the weakest contributor. Moreover, besides directly increasing the aggregation, DOM relaxed the effects of the total solids and daphnids on the aggregate size. Thus, the particle size distribution was established early during the exposure and shaped by all experimental factors and their interactions. These findings improve our understanding of the processes occurring in the exposure systems when conducting effect studies with microplastics and other particulates and demonstrate the necessity to access the particle size distribution to characterise the exposure. Aslo, relevant experimental designs with microplastics must include relevant natural particulates and DOM to ensure environmentally realistic particle behaviour and adequate particle-biota interactions.

Bacterial colonisation of plastic in the Rockall Trough, North-East Atlantic: An improved understanding of the deep-sea plastisphere

Plastic pollution has now been found within multiple ecosystems across the globe. Characterisation of microbial assemblages associated with marine plastic, or the so-called 'plastisphere', has focused predominantly on plastic in the epipelagic zone. Whether this community includes taxa that are consistently enriched on plastic compared to surrounding non plastic surfaces is unresolved, as are the ecological implications. The deep sea is likely a final sink for most of the plastic entering the ocean, yet there is limited information on microbial colonisation of plastic at depth. The aim of this study was to investigate deep-sea microbial communities associated with polystyrene (PS) and polyurethane (PU) with Bath stone used as a control. The substrates (n = 15) were deployed in the Rockall Trough (Atlantic), and recovered 420 days later from a depth of 1796 m. To characterise the bacterial communities, 16S rRNA genes were sequenced using the Illumina MiSeq platform. A dominant core microbiome (taxa shared across all substrates) comprised 8% of total ASVs (amplicon sequence variant) and accounted for 92% of the total community reads. This suggests that many commonly reported members of the plastisphere are simply opportunistic which freely colonise any hard surface. Transiently associated species consisted of approximately 7% of the total community. Thirty genera were enriched on plastic (P < 0.05), representing 1% of the total community. The discovery of novel deep-sea enriched taxa included Aurantivirga, Algivirga, IheB3-7, Spirosoma, HTCC5015, Ekhidna and Calorithrix on PS and Candidatus Obscuribacter, Haloferula, Marine Methylotrophic Group 3, Aliivibrio, Tibeticola and Dethiosulfatarculus on PU. This small fraction of the microbiome include taxa with unique metabolic abilities and show how bacterial communities can be shaped by plastic pollution at depth. This study outlines a novel approach in categorising the plastisphere to elucidate the ecological implications of enriched taxa that show an affinity for colonising plastic.

Microbiota-Dependent and -Independent Production of l-Dopa in the Gut of Daphnia magna

Host-microbiome interactions are essential for the physiological and ecological performance of the host, yet these interactions are challenging to identify. Neurotransmitters are commonly implicated in these interactions, but we know very little about the mechanisms of their involvement, especially in invertebrates. Here, we report a peripheral catecholamine (CA) pathway involving the gut microbiome of the model species Daphnia magna. We demonstrate the following: (i) tyrosine hydroxylase and Dopa (3,4-dihydroxyphenylalanine) decarboxylase enzymes are present in the gut wall; (ii) Dopa decarboxylase gene is expressed in the gut by the host, and its expression follows the molt cycle peaking after ecdysis; (iii) biologically active l-Dopa, but not dopamine, is present in the gut lumen; (iv) gut bacteria produce l-Dopa in a concentration-dependent manner when provided l-tyrosine as a substrate. Impinging on gut bacteria involvement in host physiology and ecologically relevant traits, we suggest l-Dopa as a communication agent in the host-microbiome interactions in daphnids and, possibly, other crustaceans.

IMPORTANCE Neurotransmitters are commonly implicated in host-microbiome communication, yet the molecular mechanisms of this communication remain largely elusive. We present novel evidence linking the gut microbiome to host development and growth via neurotransmitter l-Dopa in Daphnia, the established model species in ecology and evolution. We found that both Daphnia and its gut microbiome contribute to the synthesis of the l-Dopa in the gut. We also identified a peripheral pathway in the gut wall, with a molt stage-dependent dopamine synthesis, linking the gut microbiome to the daphnid development and growth. These findings suggest a central role of l-Dopa in the bidirectional communication between the animal host and its gut bacteria and translating into the ecologically important host traits suitable for subsequent testing of causality by experimental studies.