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Zhao S, Hu X, Li H, Zhang H, Lu J, Li Y, Chen Z, Bao M. Diversity and structure of pelagic microbial community in Kuroshio Extension. MARINE ENVIRONMENTAL RESEARCH 2024; 201:106697. [PMID: 39205358 DOI: 10.1016/j.marenvres.2024.106697] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/27/2024] [Revised: 07/27/2024] [Accepted: 08/15/2024] [Indexed: 09/04/2024]
Abstract
Kuroshio Extension (KE) is the most active region of oceanic change in the North Pacific Ocean, which provides an essential place for the survival of marine microorganisms. However, Vertical changes in microbial communities in the Kuroshio Extension and the mechanisms by which environmental factors drive vertical changes in community structure remain unclear. In this work, microbial diversity, abundance, and community structure of 12 water layers (from surface to bottom) at five stations were uncovered by 16S rRNA gene high-throughput sequencing. Microbial diversity and richness decreased with increasing seawater depth. Microorganisms in the euphotic zone can be well separated from other zones based on NMDS analysis. Proteobacteria (65.20%), Bacteroidota (8.48%), Actinobacteriota (5.76%), and Crenarchaeota (4.49%) accounted for a relatively large proportion and their distribution is similar in four zones. Most of microorganisms were significantly (Spearman test, p < 0.05) correlated with salinity, density, pressure, and temperature. This work enhances our understanding of vertical microbial diversity and provides insights into the pelagic microbial community structure.
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Affiliation(s)
- Shanshan Zhao
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Xin Hu
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Haoshuai Li
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Honghai Zhang
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Jinren Lu
- College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Yiming Li
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China
| | - Zhaohui Chen
- Frontier Science Center for Deep Ocean Multispheres and Earth System (FDOMES) and Physical Oceanography Laboratory, Ocean University of China, Qingdao, China; Laoshan Laboratory, Qingdao, China
| | - Mutai Bao
- Frontiers Science Center for Deep Ocean Multispheres and Earth System, Key Laboratory of Marine Chemistry Theory and Technology Ministry of Education, Ocean University of China, Qingdao, Shandong Province, 266100, China; College of Chemistry & Chemical Engineering, Ocean University of China, Qingdao, Shandong Province, 266100, China.
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Ma K, Han X, Li Q, Kong Y, Liu Q, Yan X, Luo Y, Li X, Wen H, Cao Z. Improved anaerobic sludge fermentation mediated by a tryptophan-degrading consortium: Effectiveness assessment and mechanism deciphering. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 350:119623. [PMID: 38029496 DOI: 10.1016/j.jenvman.2023.119623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Revised: 10/28/2023] [Accepted: 11/15/2023] [Indexed: 12/01/2023]
Abstract
The hydrolysis of extracellular polymeric substances (EPS) represents a critical bottleneck in the anaerobic fermentation of waste activated sludge (WAS), while tryptophan is identified as an underestimated constituent of EPS. Herein, we harnessed a tryptophan-degrading microbial consortium (TDC) to enhance the hydrolysis efficiency of WAS. At TDC dosages of 5%, 10%, and 20%, a notable increase in SCOD was observed by factors of 1.13, 1.39, and 1.88, respectively. The introduction of TDC improved both the yield and quality of short chain fatty acids (SCFAs), the maximum SCFA yield increased from 590.6 to 1820.2, 1957.9 and 2194.9 mg COD/L, whilst the acetate ratio within SCFAs was raised from 34.1% to 61.2-70.9%. Furthermore, as TDC dosage increased, the relative activity of protease exhibited significant increments, reaching 116.3%, 168.0%, and 266.1%, respectively. This enhancement facilitated WAS solubilization and the release of organic substances from bound EPS into soluble EPS. Microbial analysis identified Tetrasphaera and Soehngenia as key participants in WAS solubilization and the breakdown of protein fraction. Metabolic analysis revealed that TDC triggered the secretion of enzymes associated with amino acid metabolism and fatty acid biosynthesis, thereby fostering the decomposition of proteins and production of SCFAs.
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Affiliation(s)
- Kaili Ma
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China.
| | - Xinxin Han
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Qiujuan Li
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Yu Kong
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Qiaoli Liu
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Xu Yan
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Yahong Luo
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Xiaopin Li
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Huiyang Wen
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
| | - Zhiguo Cao
- School of Environment, Henan Normal University, Key Laboratory of Yellow River and Huai River Water Environment and Pollution Control, Ministry of Education, Xinxiang, 453000, China
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Molina-Pardines C, Haro-Moreno JM, López-Pérez M. Phosphate-related genomic islands as drivers of environmental adaptation in the streamlined marine alphaproteobacterial HIMB59. mSystems 2023; 8:e0089823. [PMID: 38054740 PMCID: PMC10734472 DOI: 10.1128/msystems.00898-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 10/17/2023] [Indexed: 12/07/2023] Open
Abstract
IMPORTANCE These results shed light on the evolutionary strategies of microbes with streamlined genomes to adapt and survive in the oligotrophic conditions that dominate the surface waters of the global ocean. At the individual level, these microbes have been subjected to evolutionary constraints that have led to a more efficient use of nutrients, removing non-essential genes named as "streamlining theory." However, at the population level, they conserve a highly diverse gene pool in flexible genomic islands resulting in polyclonal populations on the same genomic background as an evolutionary response to environmental pressures. Localization of these islands at equivalent positions in the genome facilitates horizontal transfer between clonal lineages. This high level of environmental genomic heterogeneity could explain their cosmopolitan distribution. In the case of the order HIMB59 within the class Alphaproteobacteria, two factors exert evolutionary pressure and determine this intraspecific diversity: phages and the concentration of P in the environment.
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Affiliation(s)
- Carmen Molina-Pardines
- Evolutionary Genomics Group, División de Microbiología, Universidad Miguel Hernández, San Juan, Alicante, Spain
| | - Jose M. Haro-Moreno
- Evolutionary Genomics Group, División de Microbiología, Universidad Miguel Hernández, San Juan, Alicante, Spain
| | - Mario López-Pérez
- Evolutionary Genomics Group, División de Microbiología, Universidad Miguel Hernández, San Juan, Alicante, Spain
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