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Sherif MA, Khalil MZ, Shukla R, Brown JC, Carpenter LL. Synapses, predictions, and prediction errors: A neocortical computational study of MDD using the temporal memory algorithm of HTM. Front Psychiatry 2023; 14:976921. [PMID: 36911109 PMCID: PMC9995817 DOI: 10.3389/fpsyt.2023.976921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Accepted: 01/16/2023] [Indexed: 02/25/2023] Open
Abstract
INTRODUCTION Synapses and spines play a significant role in major depressive disorder (MDD) pathophysiology, recently highlighted by the rapid antidepressant effect of ketamine and psilocybin. According to the Bayesian brain and interoception perspectives, MDD is formalized as being stuck in affective states constantly predicting negative energy balance. To understand how spines and synapses relate to the predictive function of the neocortex and thus to symptoms, we used the temporal memory (TM), an unsupervised machine-learning algorithm. TM models a single neocortical layer, learns in real-time, and extracts and predicts temporal sequences. TM exhibits neocortical biological features such as sparse firing and continuous online learning using local Hebbian-learning rules. METHODS We trained a TM model on random sequences of upper-case alphabetical letters, representing sequences of affective states. To model depression, we progressively destroyed synapses in the TM model and examined how that affected the predictive capacity of the network. We found that the number of predictions decreased non-linearly. RESULTS Destroying 50% of the synapses slightly reduced the number of predictions, followed by a marked drop with further destruction. However, reducing the synapses by 25% distinctly dropped the confidence in the predictions. Therefore, even though the network was making accurate predictions, the network was no longer confident about these predictions. DISCUSSION These findings explain how interoceptive cortices could be stuck in limited affective states with high prediction error. Connecting ketamine and psilocybin's proposed mechanism of action to depression pathophysiology, the growth of new synapses would allow representing more futuristic predictions with higher confidence. To our knowledge, this is the first study to use the TM model to connect changes happening at synaptic levels to the Bayesian formulation of psychiatric symptomatology. Linking neurobiological abnormalities to symptoms will allow us to understand the mechanisms of treatments and possibly, develop new ones.
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Affiliation(s)
- Mohamed A Sherif
- Lifespan Physician Group, Department of Psychiatry and Human Behavior, The Warren Alpert Medical School of Brown University, Carney Institute for Brain Science, Norman Prince Neurosciences Institute, Providence, RI, United States
| | - Mostafa Z Khalil
- Department of Psychiatry and Behavioral Health, Penn State Milton S. Hershey Medical Center, Penn State College of Medicine, Hershey, PA, United States
| | - Rammohan Shukla
- Department of Neurosciences, The University of Toledo College of Medicine and Life Sciences, Toledo, OH, United States
| | - Joshua C Brown
- Department of Psychiatry and Human Behavior, The Warren Alpert Medical School of Brown University, Butler Hospital, Providence, RI, United States
| | - Linda L Carpenter
- Department of Psychiatry and Human Behavior, The Warren Alpert Medical School of Brown University, Butler Hospital, Providence, RI, United States
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Rodríguez-Méndez DA, San-Juan D, Hallett M, Antonopoulos CG, López-Reynoso E, Lara-Ramírez R. A new model for freedom of movement using connectomic analysis. PeerJ 2022; 10:e13602. [PMID: 35975236 PMCID: PMC9375968 DOI: 10.7717/peerj.13602] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2020] [Accepted: 05/26/2022] [Indexed: 01/17/2023] Open
Abstract
The problem of whether we can execute free acts or not is central in philosophical thought, and it has been studied by numerous scholars throughout the centuries. Recently, neurosciences have entered this topic contributing new data and insights into the neuroanatomical basis of cognitive processes. With the advent of connectomics, a more refined landscape of brain connectivity can be analysed at an unprecedented level of detail. Here, we identify the connectivity network involved in the movement process from a connectomics point of view, from its motivation through its execution until the sense of agency develops. We constructed a "volitional network" using data derived from the Brainnetome Atlas database considering areas involved in volitional processes as known in the literature. We divided this process into eight processes and used Graph Theory to measure several structural properties of the network. Our results show that the volitional network is small-world and that it contains four communities. Nodes of the right hemisphere are contained in three of these communities whereas nodes of the left hemisphere only in two. Centrality measures indicate the nucleus accumbens is one of the most connected nodes in the network. Extensive connectivity is observed in all processes except in Decision (to move) and modulation of Agency, which might correlate with a mismatch mechanism for perception of Agency.
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Affiliation(s)
| | - Daniel San-Juan
- Epilepsy Clinic, Instituto Nacional de Neurología y Neurocirugía, Mexico City, Mexico
| | - Mark Hallett
- Human Motor Control Section, Medical Neurology Branch, NINDS, National Institutes of Health, Bethesda, MD, United States of America
| | - Chris G. Antonopoulos
- Department of Mathematical Sciences, University of Essex, Wivenhoe Park, United Kingdom
| | - Erick López-Reynoso
- Facultad de Ciencias, Universidad Autónoma del Estado de México, Toluca, Estado de México, México
| | - Ricardo Lara-Ramírez
- Centro de Investigación en Ciencias Biológicas Aplicadas, Universidad Autónoma del Estado de México, Toluca, Estado de México, México
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Larsen NY, Li X, Tan X, Ji G, Lin J, Rajkowska G, Møller J, Vihrs N, Sporring J, Sun F, Nyengaard JR. Cellular 3D-reconstruction and analysis in the human cerebral cortex using automatic serial sections. Commun Biol 2021; 4:1030. [PMID: 34475516 PMCID: PMC8413324 DOI: 10.1038/s42003-021-02548-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2020] [Accepted: 08/09/2021] [Indexed: 12/17/2022] Open
Abstract
Techniques involving three-dimensional (3D) tissue structure reconstruction and analysis provide a better understanding of changes in molecules and function. We have developed AutoCUTS-LM, an automated system that allows the latest advances in 3D tissue reconstruction and cellular analysis developments using light microscopy on various tissues, including archived tissue. The workflow in this paper involved advanced tissue sampling methods of the human cerebral cortex, an automated serial section collection system, digital tissue library, cell detection using convolution neural network, 3D cell reconstruction, and advanced analysis. Our results demonstrated the detailed structure of pyramidal cells (number, volume, diameter, sphericity and orientation) and their 3D spatial organization are arranged in a columnar structure. The pipeline of these combined techniques provides a detailed analysis of tissues and cells in biology and pathology. Nick Larsen et al. developed a pipeline to collect and image serial sections from fixed human cortex, then apply deep learning to detect pyramidal cells from 3D reconstructions of these sections. Their results reiterate that cortical pyramidal cells are organized in a columnar structure and highlight the potential of this method, which is universally applicable to characterize cells for various tissues.
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Affiliation(s)
- Nick Y Larsen
- Core Centre for Molecular Morphology, Section for Stereology and Microscopy, Department of Clinical Medicine, Aarhus University, Aarhus, Denmark. .,Centre for Stochastic Geometry and Advanced Bioimaging, Aalborg University, Aarhus University and University of Copenhagen, Aalborg, Aarhus and Copenhagen, Denmark. .,Sino-Danish Center for Education and Research, Aarhus, Denmark. .,University of the Chinese Academy of Sciences, Beijing, China.
| | - Xixia Li
- National Key Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Center for Biological Imaging, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
| | - Xueke Tan
- National Key Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Center for Biological Imaging, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
| | - Gang Ji
- National Key Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Center for Biological Imaging, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
| | - Jing Lin
- Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
| | - Grazyna Rajkowska
- Department of Psychiatry and Human Behavior, University of Mississippi Medical Center, Jackson, MS, USA
| | - Jesper Møller
- Centre for Stochastic Geometry and Advanced Bioimaging, Aalborg University, Aarhus University and University of Copenhagen, Aalborg, Aarhus and Copenhagen, Denmark.,Department of Mathematical Sciences, Aalborg University, Aalborg, Denmark
| | - Ninna Vihrs
- Department of Mathematical Sciences, Aalborg University, Aalborg, Denmark
| | - Jon Sporring
- Centre for Stochastic Geometry and Advanced Bioimaging, Aalborg University, Aarhus University and University of Copenhagen, Aalborg, Aarhus and Copenhagen, Denmark.,Department of Computer Science, University of Copenhagen, Copenhagen, Denmark
| | - Fei Sun
- Sino-Danish Center for Education and Research, Aarhus, Denmark.,University of the Chinese Academy of Sciences, Beijing, China.,National Key Laboratory of Biomacromolecules, CAS Center for Excellence in Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China.,Center for Biological Imaging, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China
| | - Jens R Nyengaard
- Core Centre for Molecular Morphology, Section for Stereology and Microscopy, Department of Clinical Medicine, Aarhus University, Aarhus, Denmark.,Centre for Stochastic Geometry and Advanced Bioimaging, Aalborg University, Aarhus University and University of Copenhagen, Aalborg, Aarhus and Copenhagen, Denmark.,Sino-Danish Center for Education and Research, Aarhus, Denmark.,Department of Pathology, Aarhus University, Aarhus, Denmark
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André N, Audiffren M, Baumeister RF. An Integrative Model of Effortful Control. Front Syst Neurosci 2019; 13:79. [PMID: 31920573 PMCID: PMC6933500 DOI: 10.3389/fnsys.2019.00079] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2019] [Accepted: 12/06/2019] [Indexed: 11/21/2022] Open
Abstract
This article presents an integrative model of effortful control, a resource-limited top-down control mechanism involved in mental tasks and physical exercises. Based on recent findings in the fields of neuroscience, social psychology and cognitive psychology, this model posits the intrinsic costs related to a weakening of the connectivity of neural networks underpinning effortful control as the main cause of mental fatigue in long and high-demanding tasks. In this framework, effort reflects three different inter-related aspects of the same construct. First, effort is a mechanism comprising a limited number of interconnected processing units that integrate information regarding the task constraints and subject’s state. Second, effort is the main output of this mechanism, namely, the effort signal that modulates neuronal activity in brain regions involved in the current task to select pertinent information. Third, effort is a feeling that emerges in awareness during effortful tasks and reflects the costs associated with goal-directed behavior. Finally, the model opens new avenues for research investigating effortful control at the behavioral and neurophysiological levels.
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Affiliation(s)
- Nathalie André
- Research Centre on Cognition and Learning, UMR CNRS 7295, University of Poitiers, Poitiers, France
| | - Michel Audiffren
- Research Centre on Cognition and Learning, UMR CNRS 7295, University of Poitiers, Poitiers, France
| | - Roy F Baumeister
- School of Psychology, University of Queensland, Brisbane, QLD, Australia
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