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Kromer JA, Tass PA. Coordinated reset stimulation of plastic neural networks with spatially dependent synaptic connections. FRONTIERS IN NETWORK PHYSIOLOGY 2024; 4:1351815. [PMID: 38863734 PMCID: PMC11165135 DOI: 10.3389/fnetp.2024.1351815] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Accepted: 04/15/2024] [Indexed: 06/13/2024]
Abstract
Background Abnormal neuronal synchrony is associated with several neurological disorders, including Parkinson's disease (PD), essential tremor, dystonia, and epilepsy. Coordinated reset (CR) stimulation was developed computationally to counteract abnormal neuronal synchrony. During CR stimulation, phase-shifted stimuli are delivered to multiple stimulation sites. Computational studies in plastic neural networks reported that CR stimulation drove the networks into an attractor of a stable desynchronized state by down-regulating synaptic connections, which led to long-lasting desynchronization effects that outlasted stimulation. Later, corresponding long-lasting desynchronization and therapeutic effects were found in animal models of PD and PD patients. To date, it is unclear how spatially dependent synaptic connections, as typically observed in the brain, shape CR-induced synaptic downregulation and long-lasting effects. Methods We performed numerical simulations of networks of leaky integrate-and-fire neurons with spike-timing-dependent plasticity and spatially dependent synaptic connections to study and further improve acute and long-term responses to CR stimulation. Results The characteristic length scale of synaptic connections relative to the distance between stimulation sites plays a key role in CR parameter adjustment. In networks with short synaptic length scales, a substantial synaptic downregulation can be achieved by selecting appropriate stimulus-related parameters, such as the stimulus amplitude and shape, regardless of the employed spatiotemporal pattern of stimulus deliveries. Complex stimulus shapes can induce local connectivity patterns in the vicinity of the stimulation sites. In contrast, in networks with longer synaptic length scales, the spatiotemporal sequence of stimulus deliveries is of major importance for synaptic downregulation. In particular, rapid shuffling of the stimulus sequence is advantageous for synaptic downregulation. Conclusion Our results suggest that CR stimulation parameters can be adjusted to synaptic connectivity to further improve the long-lasting effects. Furthermore, shuffling of CR sequences is advantageous for long-lasting desynchronization effects. Our work provides important hypotheses on CR parameter selection for future preclinical and clinical studies.
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Affiliation(s)
- Justus A. Kromer
- Department of Neurosurgery, Stanford University, Stanford, CA, United States
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Yamakou ME, Desroches M, Rodrigues S. Synchronization in STDP-driven memristive neural networks with time-varying topology. J Biol Phys 2023; 49:483-507. [PMID: 37656327 PMCID: PMC10651826 DOI: 10.1007/s10867-023-09642-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Accepted: 08/07/2023] [Indexed: 09/02/2023] Open
Abstract
Synchronization is a widespread phenomenon in the brain. Despite numerous studies, the specific parameter configurations of the synaptic network structure and learning rules needed to achieve robust and enduring synchronization in neurons driven by spike-timing-dependent plasticity (STDP) and temporal networks subject to homeostatic structural plasticity (HSP) rules remain unclear. Here, we bridge this gap by determining the configurations required to achieve high and stable degrees of complete synchronization (CS) and phase synchronization (PS) in time-varying small-world and random neural networks driven by STDP and HSP. In particular, we found that decreasing P (which enhances the strengthening effect of STDP on the average synaptic weight) and increasing F (which speeds up the swapping rate of synapses between neurons) always lead to higher and more stable degrees of CS and PS in small-world and random networks, provided that the network parameters such as the synaptic time delay [Formula: see text], the average degree [Formula: see text], and the rewiring probability [Formula: see text] have some appropriate values. When [Formula: see text], [Formula: see text], and [Formula: see text] are not fixed at these appropriate values, the degree and stability of CS and PS may increase or decrease when F increases, depending on the network topology. It is also found that the time delay [Formula: see text] can induce intermittent CS and PS whose occurrence is independent F. Our results could have applications in designing neuromorphic circuits for optimal information processing and transmission via synchronization phenomena.
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Affiliation(s)
- Marius E Yamakou
- Department of Data Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Cauerstr. 11, 91058, Erlangen, Germany.
- Max-Planck-Institut für Mathematik in den Naturwissenschaften, Inselstr. 22, 04103, Leipzig, Germany.
| | - Mathieu Desroches
- MathNeuro Project-Team, Inria Center at Université Côte d'Azur, 2004 route des Lucioles - BP 93, 06902, Cedex, Sophia Antipolis, France
| | - Serafim Rodrigues
- Mathematical, Computational and Experimental Neuroscience, Basque Center for Applied Mathematics, Alameda de Mazzaredo 14, 48009, Bilbao, Spain
- Ikerbasque, Basque Foundation for Science, Plaza Euskadi 5, 48009, Bilbao, Spain
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Bomela W, Singhal B, Li JS. Engineering spatiotemporal patterns: information encoding, processing, and controllability in oscillator ensembles. Biomed Phys Eng Express 2023; 9:045033. [PMID: 37348467 PMCID: PMC10486008 DOI: 10.1088/2057-1976/ace0c9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 04/21/2023] [Accepted: 06/22/2023] [Indexed: 06/24/2023]
Abstract
The ability to finely manipulate spatiotemporal patterns displayed in neuronal populations is critical for understanding and influencing brain functions, sleep cycles, and neurological pathologies. However, such control tasks are challenged not only by the immense scale but also by the lack of real-time state measurements of neurons in the population, which deteriorates the control performance. In this paper, we formulate the control of dynamic structures in an ensemble of neuron oscillators as a tracking problem and propose a principled control technique for designing optimal stimuli that produce desired spatiotemporal patterns in a network of interacting neurons without requiring feedback information. We further reveal an interesting presentation of information encoding and processing in a neuron ensemble in terms of its controllability property. The performance of the presented technique in creating complex spatiotemporal spiking patterns is demonstrated on neural populations described by mathematically ideal and biophysical models, including the Kuramoto and Hodgkin-Huxley models, as well as real-time experiments on Wein bridge oscillators.
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Affiliation(s)
- Walter Bomela
- Department of Electrical and Systems Engineering, Washington University in St. Louis,
United States of America
| | - Bharat Singhal
- Department of Electrical and Systems Engineering, Washington University in St. Louis,
United States of America
| | - Jr-Shin Li
- Department of Electrical and Systems Engineering, Washington University in St. Louis,
United States of America
- Division of Biology & and Biomedical Sciences, Washington University in St. Louis,
United States of America
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Schmalz J, Quinarez RV, Kothare MV, Kumar G. Controlling neocortical epileptic seizures using forced temporal spike-time stimulation: an in silico computational study. Front Comput Neurosci 2023; 17:1084080. [PMID: 37449082 PMCID: PMC10336226 DOI: 10.3389/fncom.2023.1084080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2022] [Accepted: 06/09/2023] [Indexed: 07/18/2023] Open
Abstract
Epileptic seizure is typically characterized by highly synchronized episodes of neural activity. Existing stimulation therapies focus purely on suppressing the pathologically synchronized neuronal firing patterns during the ictal (seizure) period. While these strategies are effective in suppressing seizures when they occur, they fail to prevent the re-emergence of seizures once the stimulation is turned off. Previously, we developed a novel neurostimulation motif, which we refer to as "Forced Temporal Spike-Time Stimulation" (FTSTS) that has shown remarkable promise in long-lasting desynchronization of excessively synchronized neuronal firing patterns by harnessing synaptic plasticity. In this paper, we build upon this prior work by optimizing the parameters of the FTSTS protocol in order to efficiently desynchronize the pathologically synchronous neuronal firing patterns that occur during epileptic seizures using a recently published computational model of neocortical-onset seizures. We show that the FTSTS protocol applied during the ictal period can modify the excitatory-to-inhibitory synaptic weight in order to effectively desynchronize the pathological neuronal firing patterns even after the ictal period. Our investigation opens the door to a possible new neurostimulation therapy for epilepsy.
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Affiliation(s)
- Joseph Schmalz
- Department of Chemical and Biological Engineering, University of Idaho, Moscow, ID, United States
| | - Rachel V. Quinarez
- Department of Aerospace Engineering, San José State University, San José, CA, United States
| | - Mayuresh V. Kothare
- Department of Chemical and Biomolecular Engineering, Lehigh University, Bethlehem, PA, United States
| | - Gautam Kumar
- Department of Chemical and Materials Engineering, San José State University, San José, CA, United States
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Madadi Asl M, Valizadeh A, Tass PA. Decoupling of interacting neuronal populations by time-shifted stimulation through spike-timing-dependent plasticity. PLoS Comput Biol 2023; 19:e1010853. [PMID: 36724144 PMCID: PMC9891531 DOI: 10.1371/journal.pcbi.1010853] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 01/05/2023] [Indexed: 02/02/2023] Open
Abstract
The synaptic organization of the brain is constantly modified by activity-dependent synaptic plasticity. In several neurological disorders, abnormal neuronal activity and pathological synaptic connectivity may significantly impair normal brain function. Reorganization of neuronal circuits by therapeutic stimulation has the potential to restore normal brain dynamics. Increasing evidence suggests that the temporal stimulation pattern crucially determines the long-lasting therapeutic effects of stimulation. Here, we tested whether a specific pattern of brain stimulation can enable the suppression of pathologically strong inter-population synaptic connectivity through spike-timing-dependent plasticity (STDP). More specifically, we tested how introducing a time shift between stimuli delivered to two interacting populations of neurons can effectively decouple them. To that end, we first used a tractable model, i.e., two bidirectionally coupled leaky integrate-and-fire (LIF) neurons, to theoretically analyze the optimal range of stimulation frequency and time shift for decoupling. We then extended our results to two reciprocally connected neuronal populations (modules) where inter-population delayed connections were modified by STDP. As predicted by the theoretical results, appropriately time-shifted stimulation causes a decoupling of the two-module system through STDP, i.e., by unlearning pathologically strong synaptic interactions between the two populations. Based on the overall topology of the connections, the decoupling of the two modules, in turn, causes a desynchronization of the populations that outlasts the cessation of stimulation. Decoupling effects of the time-shifted stimulation can be realized by time-shifted burst stimulation as well as time-shifted continuous simulation. Our results provide insight into the further optimization of a variety of multichannel stimulation protocols aiming at a therapeutic reshaping of diseased brain networks.
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Affiliation(s)
- Mojtaba Madadi Asl
- School of Biological Sciences, Institute for Research in Fundamental Sciences (IPM), Tehran, Iran
- Pasargad Institute for Advanced Innovative Solutions (PIAIS), Tehran, Iran
| | - Alireza Valizadeh
- Pasargad Institute for Advanced Innovative Solutions (PIAIS), Tehran, Iran
- Department of Physics, Institute for Advanced Studies in Basic Sciences (IASBS), Zanjan, Iran
| | - Peter A. Tass
- Department of Neurosurgery, Stanford University School of Medicine, Stanford, CA, United States of America
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Kromer JA, Tass PA. Synaptic reshaping of plastic neuronal networks by periodic multichannel stimulation with single-pulse and burst stimuli. PLoS Comput Biol 2022; 18:e1010568. [PMID: 36327232 PMCID: PMC9632832 DOI: 10.1371/journal.pcbi.1010568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2022] [Accepted: 09/14/2022] [Indexed: 11/06/2022] Open
Abstract
Synaptic dysfunction is associated with several brain disorders, including Alzheimer's disease, Parkinson's disease (PD) and obsessive compulsive disorder (OCD). Utilizing synaptic plasticity, brain stimulation is capable of reshaping synaptic connectivity. This may pave the way for novel therapies that specifically counteract pathological synaptic connectivity. For instance, in PD, novel multichannel coordinated reset stimulation (CRS) was designed to counteract neuronal synchrony and down-regulate pathological synaptic connectivity. CRS was shown to entail long-lasting therapeutic aftereffects in PD patients and related animal models. This is in marked contrast to conventional deep brain stimulation (DBS) therapy, where PD symptoms return shortly after stimulation ceases. In the present paper, we study synaptic reshaping by periodic multichannel stimulation (PMCS) in networks of leaky integrate-and-fire (LIF) neurons with spike-timing-dependent plasticity (STDP). During PMCS, phase-shifted periodic stimulus trains are delivered to segregated neuronal subpopulations. Harnessing STDP, PMCS leads to changes of the synaptic network structure. We found that the PMCS-induced changes of the network structure depend on both the phase lags between stimuli and the shape of individual stimuli. Single-pulse stimuli and burst stimuli with low intraburst frequency down-regulate synapses between neurons receiving stimuli simultaneously. In contrast, burst stimuli with high intraburst frequency up-regulate these synapses. We derive theoretical approximations of the stimulation-induced network structure. This enables us to formulate stimulation strategies for inducing a variety of network structures. Our results provide testable hypotheses for future pre-clinical and clinical studies and suggest that periodic multichannel stimulation may be suitable for reshaping plastic neuronal networks to counteract pathological synaptic connectivity. Furthermore, we provide novel insight on how the stimulus type may affect the long-lasting outcome of conventional DBS. This may strongly impact parameter adjustment procedures for clinical DBS, which, so far, primarily focused on acute effects of stimulation.
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Affiliation(s)
- Justus A Kromer
- Department of Neurosurgery, Stanford University, Stanford, California, United States of America
| | - Peter A Tass
- Department of Neurosurgery, Stanford University, Stanford, California, United States of America
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Xue A, Kong R, Yang Q, Eldaief MC, Angeli PA, DiNicola LM, Braga RM, Buckner RL, Yeo BTT. The detailed organization of the human cerebellum estimated by intrinsic functional connectivity within the individual. J Neurophysiol 2020; 125:358-384. [PMID: 33427596 PMCID: PMC7948146 DOI: 10.1152/jn.00561.2020] [Citation(s) in RCA: 50] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Abstract
Distinct regions of the cerebellum connect to separate regions of the cerebral cortex forming a complex topography. Although cerebellar organization has been examined in group-averaged data, study of individuals provides an opportunity to discover features that emerge at a higher spatial resolution. Here, functional connectivity MRI was used to examine the cerebellum of two intensively sampled individuals (each scanned 31 times). Connectivity to somatomotor cortex showed the expected crossed laterality and topography of the body maps. A surprising discovery was connectivity to the primary visual cortex along the vermis with evidence for representation of the central field. Within the hemispheres, each individual displayed a hierarchical progression from the inverted anterior lobe somatomotor map through to higher-order association zones. The hierarchy ended at Crus I/II and then progressed in reverse order through to the upright somatomotor map in the posterior lobe. Evidence for a third set of networks was found in the most posterior extent of the cerebellum. Detailed analysis of the higher-order association networks revealed robust representations of two distinct networks linked to the default network, multiple networks linked to cognitive control, as well as a separate representation of a language network. Although idiosyncratic spatial details emerged between subjects, each network could be detected in both individuals, and seed regions placed within the cerebellum recapitulated the full extent of the spatially specific cerebral networks. The observation of multiple networks in juxtaposed regions at the Crus I/II apex confirms the importance of this zone to higher-order cognitive function and reveals new organizational details.NEW & NOTEWORTHY Stable, within-individual maps of cerebellar organization reveal orderly macroscale representations of the cerebral cortex with local juxtaposed zones representing distinct networks. In addition, individuals reveal idiosyncratic organizational features.
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Affiliation(s)
- Aihuiping Xue
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, Singapore.,Centre for Sleep & Cognition & Centre for Translational Magnetic Resonance Research, Yong Loo Lin School of Medicine, Singapore, Singapore.,N.1 Institute for Health & Institute for Digital Medicine, National University of Singapore, Singapore, Singapore
| | - Ru Kong
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, Singapore.,Centre for Sleep & Cognition & Centre for Translational Magnetic Resonance Research, Yong Loo Lin School of Medicine, Singapore, Singapore.,N.1 Institute for Health & Institute for Digital Medicine, National University of Singapore, Singapore, Singapore
| | - Qing Yang
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, Singapore.,Centre for Sleep & Cognition & Centre for Translational Magnetic Resonance Research, Yong Loo Lin School of Medicine, Singapore, Singapore.,N.1 Institute for Health & Institute for Digital Medicine, National University of Singapore, Singapore, Singapore
| | - Mark C Eldaief
- Department of Psychiatry, Massachusetts General Hospital, Charlestown, Massachusetts
| | - Peter A Angeli
- Department of Psychology, Center for Brain Science, Harvard University, Cambridge, Massachusetts
| | - Lauren M DiNicola
- Department of Psychology, Center for Brain Science, Harvard University, Cambridge, Massachusetts
| | - Rodrigo M Braga
- Department of Neurology, Northwestern University Feinberg School of Medicine, Chicago, Illinois
| | - Randy L Buckner
- Department of Psychiatry, Massachusetts General Hospital, Charlestown, Massachusetts.,Department of Psychology, Center for Brain Science, Harvard University, Cambridge, Massachusetts.,Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts
| | - B T Thomas Yeo
- Department of Electrical and Computer Engineering, National University of Singapore, Singapore, Singapore.,Centre for Sleep & Cognition & Centre for Translational Magnetic Resonance Research, Yong Loo Lin School of Medicine, Singapore, Singapore.,N.1 Institute for Health & Institute for Digital Medicine, National University of Singapore, Singapore, Singapore.,Athinoula A. Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Charlestown, Massachusetts.,NUS Graduate School for Integrative Sciences and Engineering, National University of Singapore, Singapore, Singapore
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