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Circuit and Cellular Mechanisms Facilitate the Transformation from Dense to Sparse Coding in the Insect Olfactory System. eNeuro 2020; 7:ENEURO.0305-18.2020. [PMID: 32132095 PMCID: PMC7294456 DOI: 10.1523/eneuro.0305-18.2020] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2018] [Revised: 10/31/2019] [Accepted: 02/19/2020] [Indexed: 11/21/2022] Open
Abstract
Transformations between sensory representations are shaped by neural mechanisms at the cellular and the circuit level. In the insect olfactory system, the encoding of odor information undergoes a transition from a dense spatiotemporal population code in the antennal lobe to a sparse code in the mushroom body. However, the exact mechanisms shaping odor representations and their role in sensory processing are incompletely identified. Here, we investigate the transformation from dense to sparse odor representations in a spiking model of the insect olfactory system, focusing on two ubiquitous neural mechanisms: spike frequency adaptation at the cellular level and lateral inhibition at the circuit level. We find that cellular adaptation is essential for sparse representations in time (temporal sparseness), while lateral inhibition regulates sparseness in the neuronal space (population sparseness). The interplay of both mechanisms shapes spatiotemporal odor representations, which are optimized for the discrimination of odors during stimulus onset and offset. Response pattern correlation across different stimuli showed a nonmonotonic dependence on the strength of lateral inhibition with an optimum at intermediate levels, which is explained by two counteracting mechanisms. In addition, we find that odor identity is stored on a prolonged timescale in the adaptation levels but not in the spiking activity of the principal cells of the mushroom body, providing a testable hypothesis for the location of the so-called odor trace.
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Blanco-Rodríguez A, Camara VF, Campo F, Becherán L, Durán A, Vieira VD, de Melo H, Garcia-Ramirez AR. Development of an electronic nose to characterize odours emitted from different stages in a wastewater treatment plant. WATER RESEARCH 2018; 134:92-100. [PMID: 29407655 DOI: 10.1016/j.watres.2018.01.067] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2017] [Revised: 01/22/2018] [Accepted: 01/27/2018] [Indexed: 05/26/2023]
Abstract
Wastewater treatment plants have widely been described as a significant source of odour nuisance, which has led to an increase of neighbourhood complaints. Therefore, to mitigate the negative impact of odours, the detection and analysis of these emissions are required. This paper presents a measurement system based on an electronic nose for quantitative and qualitative odour analysis of samples collected from six different stages on a wastewater plant. Hence, two features vectors were performed in order to represent quantitative trends of the gaseous mixture sampled on the facility. In addition, odour fingerprints and a PCA were computed to discriminate odours from its sources and to detect relationships among the samples. This approach also comprises a dynamic dilution olfactometer. A PLS regression model was performed to predict the odour concentration by the electronic nose in term of odour units per cubic meter. The results show that the developed electronic nose is a promising and feasible instrument to characterize odours from wastewater plants.
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Affiliation(s)
- Andy Blanco-Rodríguez
- Laboratory of Air Quality Control (LCQAr), Department of Sanitary and Environmental Engineering (ENS), Federal University of Santa Catarina (UFSC), 88040-900, Florianópolis, SC, Brazil.
| | | | - Fernando Campo
- Centro Em Ciências Tecnológicas da Terra e Do Mar (CTTMar), Universidade Do Vale Do Itajaí (UNIVALI), 88302-202, Itajaí, SC, Brazil.
| | - Liliam Becherán
- Institute of Materials Science and Technology (IMRE), University of Havana, 10400, Havana, Cuba.
| | - Alejandro Durán
- Institute of Materials Science and Technology (IMRE), University of Havana, 10400, Havana, Cuba.
| | - Vitor Debatin Vieira
- Laboratório de Eletroforese Capilar (LabEC), Departamento de Química, Universidade Federal de Santa Catarina (UFSC), 88040-900, Florianópolis, SC, Brazil.
| | - Henrique de Melo
- Laboratory of Air Quality Control (LCQAr), Department of Sanitary and Environmental Engineering (ENS), Federal University of Santa Catarina (UFSC), 88040-900, Florianópolis, SC, Brazil.
| | - Alejandro Rafael Garcia-Ramirez
- Centro Em Ciências Tecnológicas da Terra e Do Mar (CTTMar), Universidade Do Vale Do Itajaí (UNIVALI), 88302-202, Itajaí, SC, Brazil.
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Gorur-Shandilya S, Demir M, Long J, Clark DA, Emonet T. Olfactory receptor neurons use gain control and complementary kinetics to encode intermittent odorant stimuli. eLife 2017; 6:e27670. [PMID: 28653907 PMCID: PMC5524537 DOI: 10.7554/elife.27670] [Citation(s) in RCA: 55] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2017] [Accepted: 06/26/2017] [Indexed: 11/13/2022] Open
Abstract
Insects find food and mates by navigating odorant plumes that can be highly intermittent, with intensities and durations that vary rapidly over orders of magnitude. Much is known about olfactory responses to pulses and steps, but it remains unclear how olfactory receptor neurons (ORNs) detect the intensity and timing of natural stimuli, where the absence of scale in the signal makes detection a formidable olfactory task. By stimulating Drosophila ORNs in vivo with naturalistic and Gaussian stimuli, we show that ORNs adapt to stimulus mean and variance, and that adaptation and saturation contribute to naturalistic sensing. Mean-dependent gain control followed the Weber-Fechner relation and occurred primarily at odor transduction, while variance-dependent gain control occurred at both transduction and spiking. Transduction and spike generation possessed complementary kinetic properties, that together preserved the timing of odorant encounters in ORN spiking, regardless of intensity. Such scale-invariance could be critical during odor plume navigation.
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Affiliation(s)
- Srinivas Gorur-Shandilya
- Interdepartmental Neuroscience Program, Yale University, New Haven, United States
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, United States
| | - Mahmut Demir
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, United States
| | - Junjiajia Long
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, United States
- Department of Physics, Yale University, New Haven, United States
| | - Damon A Clark
- Interdepartmental Neuroscience Program, Yale University, New Haven, United States
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, United States
- Department of Physics, Yale University, New Haven, United States
| | - Thierry Emonet
- Interdepartmental Neuroscience Program, Yale University, New Haven, United States
- Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, United States
- Department of Physics, Yale University, New Haven, United States
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Olsson SB, Challiss RAJ, Cole M, Gardeniers JGE, Gardner JW, Guerrero A, Hansson BS, Pearce TC. Biosynthetic infochemical communication. BIOINSPIRATION & BIOMIMETICS 2015; 10:043001. [PMID: 26158233 DOI: 10.1088/1748-3190/10/4/043001] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
There is an ever-increasing demand for data to be embedded in our environment at ever-decreasing temporal and spatial scales. Whilst current communication and storage technologies generally exploit the electromagnetic properties of media, chemistry offers us a new alternative for nanoscale signaling using molecules as messengers with high information content. Biological systems effectively overcome the challenges of chemical communication using highly specific biosynthetic pathways for signal generation together with specialized protein receptors and nervous systems. Here we consider a new approach for information transmission based upon nature's quintessential example of infochemical communication, the moth pheromone system. To approach the sensitivity, specificity and versatility of infochemical communication seen in nature, we describe an array of biologically-inspired technologies for the production, transmission, detection, and processing of molecular signals. We show how it is possible to implement each step of the moth pheromone pathway for biosynthesis, transmission, receptor protein binding/transduction, and antennal lobe processing of monomolecular and multimolecular signals. For each implemented step, we discuss the value, current limitations, and challenges for the future development and integration of infochemical communication technologies. Together, these building blocks provide a starting point for future technologies that can utilize programmable emission and detection of multimolecular information for a new and robust means of communicating chemical information.
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Affiliation(s)
- S B Olsson
- Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, Jena, Germany
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Rapid and slow chemical synaptic interactions of cholinergic projection neurons and GABAergic local interneurons in the insect antennal lobe. J Neurosci 2014; 34:13039-46. [PMID: 25253851 DOI: 10.1523/jneurosci.0765-14.2014] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The antennal lobe (AL) of insects constitutes the first synaptic relay and processing center of olfactory information, received from olfactory sensory neurons located on the antennae. Complex synaptic connectivity between olfactory neurons of the AL ultimately determines the spatial and temporal tuning profile of (output) projection neurons to odors. Here we used paired whole-cell patch-clamp recordings in the cockroach Periplaneta americana to characterize synaptic interactions between cholinergic uniglomerular projection neurons (uPNs) and GABAergic local interneurons (LNs), both of which are key components of the insect olfactory system. We found rapid, strong excitatory synaptic connections between uPNs and LNs. This rapid excitatory transmission was blocked by the nicotinic acetylcholine receptor blocker mecamylamine. IPSPs, elicited by synaptic input from a presynaptic LN, were recorded in both uPNs and LNs. IPSPs were composed of both slow, sustained components and fast, transient components which were coincident with presynaptic action potentials. The fast IPSPs were blocked by the GABAA receptor chloride channel blocker picrotoxin, whereas the slow sustained IPSPs were blocked by the GABAB receptor blocker CGP-54626. This is the first study to directly show the predicted dual fast- and slow-inhibitory action of LNs, which was predicted to be key in shaping complex odor responses in the AL of insects. We also provide the first direct characterization of rapid postsynaptic potentials coincident with presynaptic spikes between olfactory processing neurons in the AL.
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Shlizerman E, Riffell JA, Kutz JN. Data-driven inference of network connectivity for modeling the dynamics of neural codes in the insect antennal lobe. Front Comput Neurosci 2014; 8:70. [PMID: 25165442 PMCID: PMC4131428 DOI: 10.3389/fncom.2014.00070] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2014] [Accepted: 06/20/2014] [Indexed: 11/13/2022] Open
Abstract
The antennal lobe (AL), olfactory processing center in insects, is able to process stimuli into distinct neural activity patterns, called olfactory neural codes. To model their dynamics we perform multichannel recordings from the projection neurons in the AL driven by different odorants. We then derive a dynamic neuronal network from the electrophysiological data. The network consists of lateral-inhibitory neurons and excitatory neurons (modeled as firing-rate units), and is capable of producing unique olfactory neural codes for the tested odorants. To construct the network, we (1) design a projection, an odor space, for the neural recording from the AL, which discriminates between distinct odorants trajectories (2) characterize scent recognition, i.e., decision-making based on olfactory signals and (3) infer the wiring of the neural circuit, the connectome of the AL. We show that the constructed model is consistent with biological observations, such as contrast enhancement and robustness to noise. The study suggests a data-driven approach to answer a key biological question in identifying how lateral inhibitory neurons can be wired to excitatory neurons to permit robust activity patterns.
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Affiliation(s)
- Eli Shlizerman
- Department of Applied Mathematics, University of Washington Seattle, WA, USA
| | | | - J Nathan Kutz
- Department of Applied Mathematics, University of Washington Seattle, WA, USA
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Capurro A, Baroni F, Kuebler LS, Kárpáti Z, Dekker T, Lei H, Hansson BS, Pearce TC, Olsson SB. Temporal features of spike trains in the moth antennal lobe revealed by a comparative time-frequency analysis. PLoS One 2014; 9:e84037. [PMID: 24465391 PMCID: PMC3896344 DOI: 10.1371/journal.pone.0084037] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2013] [Accepted: 11/11/2013] [Indexed: 12/24/2022] Open
Abstract
The discrimination of complex sensory stimuli in a noisy environment is an immense computational task. Sensory systems often encode stimulus features in a spatiotemporal fashion through the complex firing patterns of individual neurons. To identify these temporal features, we have developed an analysis that allows the comparison of statistically significant features of spike trains localized over multiple scales of time-frequency resolution. Our approach provides an original way to utilize the discrete wavelet transform to process instantaneous rate functions derived from spike trains, and select relevant wavelet coefficients through statistical analysis. Our method uncovered localized features within olfactory projection neuron (PN) responses in the moth antennal lobe coding for the presence of an odor mixture and the concentration of single component odorants, but not for compound identities. We found that odor mixtures evoked earlier responses in biphasic response type PNs compared to single components, which led to differences in the instantaneous firing rate functions with their signal power spread across multiple frequency bands (ranging from 0 to 45.71 Hz) during a time window immediately preceding behavioral response latencies observed in insects. Odor concentrations were coded in excited response type PNs both in low frequency band differences (2.86 to 5.71 Hz) during the stimulus and in the odor trace after stimulus offset in low (0 to 2.86 Hz) and high (22.86 to 45.71 Hz) frequency bands. These high frequency differences in both types of PNs could have particular relevance for recruiting cellular activity in higher brain centers such as mushroom body Kenyon cells. In contrast, neurons in the specialized pheromone-responsive area of the moth antennal lobe exhibited few stimulus-dependent differences in temporal response features. These results provide interesting insights on early insect olfactory processing and introduce a novel comparative approach for spike train analysis applicable to a variety of neuronal data sets.
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Affiliation(s)
- Alberto Capurro
- Department of Engineering, University of Leicester, Leicester, United Kingdom
| | - Fabiano Baroni
- School of Psychology and Psychiatry, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton, Victoria, Australia
- NeuroEngineering Laboratory, Department of Electrical & Electronic Engineering, University of Melbourne, Melbourne, Victoria, Australia
- Centre for Neural Engineering, University of Melbourne, Melbourne, Victoria, Australia
| | - Linda S. Kuebler
- Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Zsolt Kárpáti
- Department of Zoology, Plant Protection Institute, Centre for Agricultural Research, Hungarian Academy of Sciences, Budapest, Hungary
| | - Teun Dekker
- Division of Chemical Ecology, Swedish University of Agricultural Sciences, Alnarp, Sweden
| | - Hong Lei
- Department of Neuroscience, School of Mind, Brain and Behavior, University of Arizona, Tucson, Arizona, United States of America
| | - Bill S. Hansson
- Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Timothy C. Pearce
- Department of Engineering, University of Leicester, Leicester, United Kingdom
| | - Shannon B. Olsson
- Department of Evolutionary Neuroethology, Max Planck Institute for Chemical Ecology, Jena, Germany
- * E-mail:
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Pearce TC, Karout S, Rácz Z, Capurro A, Gardner JW, Cole M. Rapid processing of chemosensor transients in a neuromorphic implementation of the insect macroglomerular complex. Front Neurosci 2013; 7:119. [PMID: 23874265 PMCID: PMC3709137 DOI: 10.3389/fnins.2013.00119] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2012] [Accepted: 06/20/2013] [Indexed: 12/28/2022] Open
Abstract
We present a biologically-constrained neuromorphic spiking model of the insect antennal lobe macroglomerular complex that encodes concentration ratios of chemical components existing within a blend, implemented using a set of programmable logic neuronal modeling cores. Depending upon the level of inhibition and symmetry in its inhibitory connections, the model exhibits two dynamical regimes: fixed point attractor (winner-takes-all type), and limit cycle attractor (winnerless competition type) dynamics. We show that, when driven by chemosensor input in real-time, the dynamical trajectories of the model's projection neuron population activity accurately encode the concentration ratios of binary odor mixtures in both dynamical regimes. By deploying spike timing-dependent plasticity in a subset of the synapses in the model, we demonstrate that a Hebbian-like associative learning rule is able to organize weights into a stable configuration after exposure to a randomized training set comprising a variety of input ratios. Examining the resulting local interneuron weights in the model shows that each inhibitory neuron competes to represent possible ratios across the population, forming a ratiometric representation via mutual inhibition. After training the resulting dynamical trajectories of the projection neuron population activity show amplification and better separation in their response to inputs of different ratios. Finally, we demonstrate that by using limit cycle attractor dynamics, it is possible to recover and classify blend ratio information from the early transient phases of chemosensor responses in real-time more rapidly and accurately compared to a nearest-neighbor classifier applied to the normalized chemosensor data. Our results demonstrate the potential of biologically-constrained neuromorphic spiking models in achieving rapid and efficient classification of early phase chemosensor array transients with execution times well beyond biological timescales.
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Affiliation(s)
- Timothy C Pearce
- Centre for Bioengineering, Department of Engineering, University of Leicester Leicester, East Midlands, UK
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Huerta R, Nowotny T. Bio-inspired solutions to the challenges of chemical sensing. FRONTIERS IN NEUROENGINEERING 2012; 5:24. [PMID: 23112773 PMCID: PMC3482693 DOI: 10.3389/fneng.2012.00024] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 10/08/2012] [Accepted: 10/10/2012] [Indexed: 11/16/2022]
Affiliation(s)
- Ramon Huerta
- BioCircuits Institute, University of California San Diego, CA, USA
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Chong KY, Capurro A, Karout S, Pearce TC. Stimulus and network dynamics collide in a ratiometric model of the antennal lobe macroglomerular complex. PLoS One 2012; 7:e29602. [PMID: 22253743 PMCID: PMC3254609 DOI: 10.1371/journal.pone.0029602] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2011] [Accepted: 12/01/2011] [Indexed: 12/20/2022] Open
Abstract
Time is considered to be an important encoding dimension in olfaction, as neural populations generate odour-specific spatiotemporal responses to constant stimuli. However, during pheromone mediated anemotactic search insects must discriminate specific ratios of blend components from rapidly time varying input. The dynamics intrinsic to olfactory processing and those of naturalistic stimuli can therefore potentially collide, thereby confounding ratiometric information. In this paper we use a computational model of the macroglomerular complex of the insect antennal lobe to study the impact on ratiometric information of this potential collision between network and stimulus dynamics. We show that the model exhibits two different dynamical regimes depending upon the connectivity pattern between inhibitory interneurons (that we refer to as fixed point attractor and limit cycle attractor), which both generate ratio-specific trajectories in the projection neuron output population that are reminiscent of temporal patterning and periodic hyperpolarisation observed in olfactory antennal lobe neurons. We compare the performance of the two corresponding population codes for reporting ratiometric blend information to higher centres of the insect brain. Our key finding is that whilst the dynamically rich limit cycle attractor spatiotemporal code is faster and more efficient in transmitting blend information under certain conditions it is also more prone to interference between network and stimulus dynamics, thus degrading ratiometric information under naturalistic input conditions. Our results suggest that rich intrinsically generated network dynamics can provide a powerful means of encoding multidimensional stimuli with high accuracy and efficiency, but only when isolated from stimulus dynamics. This interference between temporal dynamics of the stimulus and temporal patterns of neural activity constitutes a real challenge that must be successfully solved by the nervous system when faced with naturalistic input.
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Affiliation(s)
- Kwok Ying Chong
- Centre for Bioengineering, Department of Engineering, University of Leicester, Leicester, United Kingdom
| | - Alberto Capurro
- Centre for Bioengineering, Department of Engineering, University of Leicester, Leicester, United Kingdom
| | - Salah Karout
- Centre for Bioengineering, Department of Engineering, University of Leicester, Leicester, United Kingdom
| | - Timothy Charles Pearce
- Centre for Bioengineering, Department of Engineering, University of Leicester, Leicester, United Kingdom
- * E-mail:
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