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Feng X, Hua Y, Zou J, Jia S, Ji J, Xing Y, Zhou J, Liao J. Intelligible Models for HealthCare: Predicting the Probability of 6-Month Unfavorable Outcome in Patients with Ischemic Stroke. Neuroinformatics 2022; 20:575-585. [PMID: 34435319 DOI: 10.1007/s12021-021-09535-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/04/2021] [Indexed: 12/31/2022]
Abstract
Early prediction of unfavorable outcome after ischemic stroke is significant for clinical management. Machine learning as a novel computational modeling technique could help clinicians to address the challenge. We aim to investigate the applicability of machine learning models for individualized prediction in ischemic stroke patients and demonstrate the utility of various model-agnostic explanation techniques for machine learning predictions. A total of 499 consecutive patients with Unfavorable [modified Rankin Scale (mRS) score 3-6, n = 140] and favorable (mRS score 0-2, n = 359) outcome after 6-month from ischemic stroke were enrolled in this study. Four machine learning models, including Random Forest [RF], eXtreme Gradient Boosting [XGBoost], Adaptive Boosting [Adaboost] and Support Vector Machine [SVM] were performed with the area-under-the-curve (AUC): (90.20 ± 0.22)%, (86.91 ± 1.05)%, (86.49 ± 2.35)%, (81.89 ± 2.40)%, respectively. Three global interpretability techniques (Feature Importance shows the contribution of selected features, Partial Dependence Plot aims to visualize the average effect of a feature on the predicted probability of unfavorable outcome, Feature Interaction detects the change in the prediction that occurs by varying the features after considering the individual feature effects) and one local interpretability technique (Shapley Value indicates the probability of unfavorable outcome of different instances) have been applied to present the interpretability techniques via visualization. Thereby, the current study is important for better understanding intelligible healthcare analytics via explanations for the prediction of local and global levels, and potentially reduction of the mortality of patients with ischemic stroke by assisting clinicians in the decision-making process.
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Affiliation(s)
- Xiaobing Feng
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing, China
| | - Yingrong Hua
- School of Pharmacy, China Pharmaceutical University, Nanjing, China
| | - Jianjun Zou
- Department of Clinical Pharmacology, Nanjing First Hospital, Nanjing Medical University, Nanjing, China
| | - Shuopeng Jia
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing, China
| | - Jiatong Ji
- School of Basic Medicine and Clinical Pharmacy, China Pharmaceutical University, Nanjing, China
| | - Yan Xing
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, China
| | - Junshan Zhou
- Department of Neurology, Nanjing First Hospital, Nanjing, China
| | - Jun Liao
- School of Science, China Pharmaceutical University, #639 Longmian Avenue, Jiangning District, Nanjing, 211198, China.
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3
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Onose G, Anghelescu A, Blendea D, Ciobanu V, Daia C, Firan FC, Oprea M, Spinu A, Popescu C, Ionescu A, Busnatu Ș, Munteanu C. Cellular and Molecular Targets for Non-Invasive, Non-Pharmacological Therapeutic/Rehabilitative Interventions in Acute Ischemic Stroke. Int J Mol Sci 2022; 23:ijms23020907. [PMID: 35055089 PMCID: PMC8846361 DOI: 10.3390/ijms23020907] [Citation(s) in RCA: 34] [Impact Index Per Article: 17.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 01/07/2022] [Accepted: 01/12/2022] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND Cerebral circulation delivers the blood flow to the brain through a dedicated network of sanguine vessels. A healthy human brain can regulate cerebral blood flow (CBF) according to any physiological or pathological challenges. The brain is protected by its self-regulatory mechanisms, which are dependent on neuronal and support cellular populations, including endothelial ones, as well as metabolic, and even myogenic factors. OBJECTIVES Accumulating data suggest that "non-pharmacological" approaches might provide new opportunities for stroke therapy, such as electro-/acupuncture, hyperbaric oxygen therapy, hypothermia/cooling, photobiomodulation, therapeutic gases, transcranial direct current stimulations, or transcranial magnetic stimulations. We reviewed the recent data on the mechanisms and clinical implications of these non-pharmaceutical treatments. METHODS To present the state-of-the-art for currently available non-invasive, non-pharmacological-related interventions in acute ischemic stroke, we accomplished this synthetic and systematic literature review based on the Preferred Reporting Items for Systematic Principles Reviews and Meta-Analyses (PRISMA). RESULTS The initial number of obtained articles was 313. After fulfilling the five steps in the filtering/selection methodology, 54 fully eligible papers were selected for synthetic review. We enhanced our documentation with other bibliographic resources connected to our subject, identified in the literature within a non-standardized search, to fill the knowledge gaps. Fifteen clinical trials were also identified. DISCUSSION Non-invasive, non-pharmacological therapeutic/rehabilitative interventions for acute ischemic stroke are mainly holistic therapies. Therefore, most of them are not yet routinely used in clinical practice, despite some possible beneficial effects, which have yet to be supplementarily proven in more related studies. Moreover, few of the identified clinical trials are already completed and most do not have final results. CONCLUSIONS This review synthesizes the current findings on acute ischemic stroke therapeutic/rehabilitative interventions, described as non-invasive and non-pharmacological.
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Affiliation(s)
- Gelu Onose
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
- Correspondence: (G.O.); (C.M.)
| | - Aurelian Anghelescu
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
- Faculty of Midwives and Nursing, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania
| | - Dan Blendea
- Faculty of Medicine, University ”Titu Maiorescu”, 0400511 Bucharest, Romania;
- Physical and Rehabilitation Medicine & Balneology Clinic Division, Teaching Emergency Hospital of the Ilfov County, 022113 Bucharest, Romania;
| | - Vlad Ciobanu
- Computer Science Department, Politehnica University of Bucharest, 060042 Bucharest, Romania;
| | - Cristina Daia
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
| | - Florentina Carmen Firan
- Physical and Rehabilitation Medicine & Balneology Clinic Division, Teaching Emergency Hospital of the Ilfov County, 022113 Bucharest, Romania;
| | - Mihaela Oprea
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
| | - Aura Spinu
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
| | - Cristina Popescu
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
| | - Anca Ionescu
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
| | - Ștefan Busnatu
- Faculty of Medicine, University of Medicine and Pharmacy “Carol Davila”, 020022 Bucharest, Romania; (C.D.); (M.O.); (A.S.); (A.I.); (Ș.B.)
| | - Constantin Munteanu
- Neuromuscular Rehabilitation Clinic Division, Teaching Emergency Hospital” Bagdasar-Arseni”, 041915 Bucharest, Romania; (A.A.); (C.P.)
- Faculty of Medical Bioengineering, University of Medicine and Pharmacy” Grigore T. Popa”, 700115 Iași, Romania
- Correspondence: (G.O.); (C.M.)
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4
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Li C, Sun G, Chen B, Xu L, Ye Y, He J, Bao Z, Zhao P, Miao Z, Zhao L, Hu J, You Y, Liu N, Chao H, Ji J. Nuclear receptor coactivator 4-mediated ferritinophagy contributes to cerebral ischemia-induced ferroptosis in ischemic stroke. Pharmacol Res 2021; 174:105933. [PMID: 34634471 DOI: 10.1016/j.phrs.2021.105933] [Citation(s) in RCA: 107] [Impact Index Per Article: 35.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/03/2021] [Revised: 08/28/2021] [Accepted: 10/06/2021] [Indexed: 01/18/2023]
Abstract
Ischemic stroke poses a significant health risk due to its high rate of disability and mortality. To address this problem, several therapeutic approaches have been proposed, including interruption targeting programmed cell death (PCD). Ferroptosis is a newly defined PCD characterized by iron-dependent accumulation of lipid peroxidation, and is becoming a promising target for treating numerous diseases. To explore the underlying mechanisms of the initiation and execution of ferroptosis in ischemic stroke, we established stroke models in vivo and in vitro simulating ischemia/reperfusion (I/R) neuronal injury. Different from previous reports on stroke, we tested ferroptosis by measuring the levels of core proteins, such as ACSL4, 15-LOX2, Ferritin and GPX4. In addition, I/R injury induces excessive degradation of ferritin via the autophagy pathway and subsequent increase of free iron in neurons. This phenomenon has recently been termed ferritinophagy and reported to be regulated by nuclear receptor coactivator 4 (NCOA4) in some cell lines. Increased NCOA4 in cytoplasm was detected in our study and then silenced by shRNA to investigate its function. Both in vivo and in vitro, NCOA4 deletion notably abrogated ferritinophagy caused by I/R injury and thus inhibited ferroptosis. Furthermore, we found that NCOA4 was upregulated by ubiquitin specific peptidase 14 (USP14) via a deubiquitination process in damaged neurons, and we found evidence of pharmacological inhibition of USP14 effectively reducing NCOA4 levels to protect neurons from ferritinophagy-mediated ferroptosis. These findings suggest a novel and effective target for treating ischemic stroke.
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Affiliation(s)
- Chong Li
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Guangchi Sun
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Binglin Chen
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Lei Xu
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Yangfan Ye
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Jinyan He
- School of Medical Imaging, Nanjing Medical University, Nanjing, China
| | - Zhongyuan Bao
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Pengzhan Zhao
- Department of Neurosurgery, The First Affiliated Hospital of Anhui University of Chinese Medicine, Hefei, China
| | - Zong Miao
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Lin Zhao
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Jingming Hu
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Yongping You
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Ning Liu
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
| | - Honglu Chao
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
| | - Jing Ji
- Department of Neurosurgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China.
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Pruvost-Robieux E, Benzakoun J, Turc G, Marchi A, Mancusi RL, Lamy C, Domigo V, Oppenheim C, Calvet D, Baron JC, Mas JL, Gavaret M. Cathodal Transcranial Direct Current Stimulation in Acute Ischemic Stroke: Pilot Randomized Controlled Trial. Stroke 2021; 52:1951-1960. [PMID: 33866820 DOI: 10.1161/strokeaha.120.032056] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
[Figure: see text].
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Affiliation(s)
- Estelle Pruvost-Robieux
- Neurophysiology Department (E.P.-R., A.M., M.G.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Joseph Benzakoun
- Neuroradiology Department (J.B., C.O.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Guillaume Turc
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Angela Marchi
- Neurophysiology Department (E.P.-R., A.M., M.G.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Rossella Letizia Mancusi
- Délégation à la Recherche Clinique et à l'Innovation (R.L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris
| | - Catherine Lamy
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris
| | - Valérie Domigo
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris
| | - Catherine Oppenheim
- Neuroradiology Department (J.B., C.O.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - David Calvet
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Jean-Claude Baron
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Jean-Louis Mas
- Neurology Department (G.T., C.L., V.D., D.C., J.-C.B., J.-L.M.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
| | - Martine Gavaret
- Neurophysiology Department (E.P.-R., A.M., M.G.), GHU Paris Psychiatrie et Neurosciences, Sainte Anne Hospital, Paris.,Université de Paris, Institut de Psychiatrie et Neurosciences de Paris, Inserm U1266, France (E.P.-R., J.B., G.T., C.O., D.C., J.-C.B., J.-L.M., M.G.).,FHU Neurovasc, Institute of Psychiatry and Neuroscience of Paris (IPNP), INSERM UMR 1266 (E.P.-R., J.B., G.T., A.M., C.O., D.C., J.-C.B., J.-L.M., M.G.)
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6
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Abstract
Despite thousands of neuroprotectants demonstrating promise in preclinical trials, a neuroprotective therapeutic has yet to be approved for the treatment of acute brain injuries such as stroke or traumatic brain injury. Developing a more detailed understanding of models and populations demonstrating "neurological resilience" in spite of brain injury can give us important insights into new translational therapies. Resilience is the process of active adaptation to a stressor. In the context of neuroprotection, models of preconditioning and unique animal models of extreme physiology (such as hibernating species) reliably demonstrate resilience in the laboratory setting. In the clinical setting, resilience is observed in young patients and can be found in those with specific genetic polymorphisms. These important examples of resilience can help transform and extend the current neuroprotective framework from simply countering the injurious cascade into one that anticipates, monitors, and optimizes patients' physiological responses from the time of injury throughout the process of recovery. This review summarizes the underpinnings of key adaptations common to models of resilience and how this understanding can be applied to new neuroprotective approaches.
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Affiliation(s)
- Neel S Singhal
- Department of Neurology, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA.
| | - Chung-Huan Sun
- Department of Neurology, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA
| | - Evan M Lee
- Cardiovascular Research Institute, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA
- Department of Physiology, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA
| | - Dengke K Ma
- Cardiovascular Research Institute, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA
- Department of Physiology, University of California-San Francisco, 555 South Mission Bay Blvd, San Francisco, CA, 94158, USA
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