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Lu Y, Cui Y, Cao L, Dong Z, Cheng L, Wu W, Wang C, Liu X, Liu Y, Zhang B, Li D, Zhao B, Wang H, Li K, Ma L, Shi W, Li W, Ma Y, Du Z, Zhang J, Xiong H, Luo N, Liu Y, Hou X, Han J, Sun H, Cai T, Peng Q, Feng L, Wang J, Paxinos G, Yang Z, Fan L, Jiang T. Macaque Brainnetome Atlas: A multifaceted brain map with parcellation, connection, and histology. Sci Bull (Beijing) 2024:S2095-9273(24)00187-7. [PMID: 38580551 DOI: 10.1016/j.scib.2024.03.031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2023] [Revised: 01/18/2024] [Accepted: 03/11/2024] [Indexed: 04/07/2024]
Abstract
The rhesus macaque (Macaca mulatta) is a crucial experimental animal that shares many genetic, brain organizational, and behavioral characteristics with humans. A macaque brain atlas is fundamental to biomedical and evolutionary research. However, even though connectivity is vital for understanding brain functions, a connectivity-based whole-brain atlas of the macaque has not previously been made. In this study, we created a new whole-brain map, the Macaque Brainnetome Atlas (MacBNA), based on the anatomical connectivity profiles provided by high angular and spatial resolution ex vivo diffusion MRI data. The new atlas consists of 248 cortical and 56 subcortical regions as well as their structural and functional connections. The parcellation and the diffusion-based tractography were evaluated with invasive neuronal-tracing and Nissl-stained images. As a demonstrative application, the structural connectivity divergence between macaque and human brains was mapped using the Brainnetome atlases of those two species to uncover the genetic underpinnings of the evolutionary changes in brain structure. The resulting resource includes: (1) the thoroughly delineated Macaque Brainnetome Atlas (MacBNA), (2) regional connectivity profiles, (3) the postmortem high-resolution macaque diffusion and T2-weighted MRI dataset (Brainnetome-8), and (4) multi-contrast MRI, neuronal-tracing, and histological images collected from a single macaque. MacBNA can serve as a common reference frame for mapping multifaceted features across modalities and spatial scales and for integrative investigation and characterization of brain organization and function. Therefore, it will enrich the collaborative resource platform for nonhuman primates and facilitate translational and comparative neuroscience research.
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Affiliation(s)
- Yuheng Lu
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yue Cui
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Long Cao
- Henan Key Laboratory of Imaging and Intelligent Processing, PLA Strategic Support Force Information Engineering University, Zhengzhou 450001, China; Key Laboratory for NeuroInformation of the Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu 610054, China
| | - Zhenwei Dong
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Luqi Cheng
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Life and Environmental Sciences, Guilin University of Electronic Technology, Guilin 541004, China; Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China
| | - Wen Wu
- Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China
| | - Changshuo Wang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China; Sino-Danish College, University of Chinese Academy of Science, Beijing 100049, China
| | - Xinyi Liu
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Youtong Liu
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Baogui Zhang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Deying Li
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Bokai Zhao
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Haiyan Wang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Kaixin Li
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Mechanical and Power Engineering, Harbin University of Science and Technology, Harbin 150080, China
| | - Liang Ma
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Weiyang Shi
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wen Li
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yawei Ma
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China; Sino-Danish College, University of Chinese Academy of Science, Beijing 100049, China
| | - Zongchang Du
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jiaqi Zhang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China
| | - Hui Xiong
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Na Luo
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Yanyan Liu
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Xiaoxiao Hou
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Jinglu Han
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; University of Chinese Academy of Sciences, Beijing 100049, China; Sino-Danish College, University of Chinese Academy of Science, Beijing 100049, China
| | - Hongji Sun
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China
| | - Tao Cai
- Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China
| | - Qiang Peng
- Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China
| | - Linqing Feng
- Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China
| | - Jiaojian Wang
- State Key Laboratory of Primate Biomedical Research, Institute of Primate Translational Medicine, Kunming University of Science and Technology, Kunming 650500, China
| | - George Paxinos
- Neuroscience Research Australia and The University of New South Wales, Sydney NSW 2031, Australia
| | - Zhengyi Yang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; Xiaoxiang Institute for Brain Health and Yongzhou Central Hospital, Yongzhou 425000, China.
| | - Lingzhong Fan
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Tianzi Jiang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing 100190, China; School of Artificial Intelligence, University of Chinese Academy of Sciences, Beijing 100049, China; Research Center for Augmented Intelligence, Zhejiang Lab, Hangzhou 311100, China; Xiaoxiang Institute for Brain Health and Yongzhou Central Hospital, Yongzhou 425000, China.
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He B, Cao L, Xia X, Zhang B, Zhang D, You B, Fan L, Jiang T. Fine-Grained Topography and Modularity of the Macaque Frontal Pole Cortex Revealed by Anatomical Connectivity Profiles. Neurosci Bull 2020; 36:1454-1473. [PMID: 33108588 PMCID: PMC7719154 DOI: 10.1007/s12264-020-00589-1] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2020] [Accepted: 07/30/2020] [Indexed: 11/25/2022] Open
Abstract
The frontal pole cortex (FPC) plays key roles in various higher-order functions and is highly developed in non-human primates. An essential missing piece of information is the detailed anatomical connections for finer parcellation of the macaque FPC than provided by the previous tracer results. This is important for understanding the functional architecture of the cerebral cortex. Here, combining cross-validation and principal component analysis, we formed a tractography-based parcellation scheme that applied a machine learning algorithm to divide the macaque FPC (2 males and 6 females) into eight subareas using high-resolution diffusion magnetic resonance imaging with the 9.4T Bruker system, and then revealed their subregional connections. Furthermore, we applied improved hierarchical clustering to the obtained parcels to probe the modular structure of the subregions, and found that the dorsolateral FPC, which contains an extension to the medial FPC, was mainly connected to regions of the default-mode network. The ventral FPC was mainly involved in the social-interaction network and the dorsal FPC in the metacognitive network. These results enhance our understanding of the anatomy and circuitry of the macaque brain, and contribute to FPC-related clinical research.
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Affiliation(s)
- Bin He
- School of Mechanical and Power Engineering, Harbin University of Science and Technology, Harbin, 150080, China.,Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.,National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, 100190, China
| | - Long Cao
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.,Key Laboratory for NeuroInformation of the Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China
| | - Xiaoluan Xia
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.,College of Information and Computer, Taiyuan University of Technology, Taiyuan, 030600, China
| | - Baogui Zhang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China.,National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, 100190, China
| | - Dan Zhang
- Core Facility, Center of Biomedical Analysis, Tsinghua University, Beijing, 100084, China
| | - Bo You
- School of Mechanical and Power Engineering, Harbin University of Science and Technology, Harbin, 150080, China.
| | - Lingzhong Fan
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China. .,National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, 100190, China. .,Center for Excellence in Brain Science and Intelligence Technology, Institute of Automation, CAS, Beijing, 100190, China. .,University of CAS, Beijing, 100049, China.
| | - Tianzi Jiang
- Brainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, 100190, China. .,National Laboratory of Pattern Recognition, Institute of Automation, Chinese Academy of Sciences (CAS), Beijing, 100190, China. .,Center for Excellence in Brain Science and Intelligence Technology, Institute of Automation, CAS, Beijing, 100190, China. .,Key Laboratory for NeuroInformation of the Ministry of Education, School of Life Science and Technology, University of Electronic Science and Technology of China, Chengdu, 610054, China. .,The Queensland Brain Institute, University of Queensland, Brisbane, QLD, 4072, Australia. .,University of CAS, Beijing, 100049, China. .,Chinese Institute for Brain Research, Beijing, 102206, China.
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