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Loh HW, Ooi CP, Oh SL, Barua PD, Tan YR, Acharya UR, Fung DSS. ADHD/CD-NET: automated EEG-based characterization of ADHD and CD using explainable deep neural network technique. Cogn Neurodyn 2024; 18:1609-1625. [PMID: 39104684 PMCID: PMC11297883 DOI: 10.1007/s11571-023-10028-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 10/04/2023] [Accepted: 10/23/2023] [Indexed: 08/07/2024] Open
Abstract
In this study, attention deficit hyperactivity disorder (ADHD), a childhood neurodevelopmental disorder, is being studied alongside its comorbidity, conduct disorder (CD), a behavioral disorder. Because ADHD and CD share commonalities, distinguishing them is difficult, thus increasing the risk of misdiagnosis. It is crucial that these two conditions are not mistakenly identified as the same because the treatment plan varies depending on whether the patient has CD or ADHD. Hence, this study proposes an electroencephalogram (EEG)-based deep learning system known as ADHD/CD-NET that is capable of objectively distinguishing ADHD, ADHD + CD, and CD. The 12-channel EEG signals were first segmented and converted into channel-wise continuous wavelet transform (CWT) correlation matrices. The resulting matrices were then used to train the convolutional neural network (CNN) model, and the model's performance was evaluated using 10-fold cross-validation. Gradient-weighted class activation mapping (Grad-CAM) was also used to provide explanations for the prediction result made by the 'black box' CNN model. Internal private dataset (45 ADHD, 62 ADHD + CD and 16 CD) and external public dataset (61 ADHD and 60 healthy controls) were used to evaluate ADHD/CD-NET. As a result, ADHD/CD-NET achieved classification accuracy, sensitivity, specificity, and precision of 93.70%, 90.83%, 95.35% and 91.85% for the internal evaluation, and 98.19%, 98.36%, 98.03% and 98.06% for the external evaluation. Grad-CAM also identified significant channels that contributed to the diagnosis outcome. Therefore, ADHD/CD-NET can perform temporal localization and choose significant EEG channels for diagnosis, thus providing objective analysis for mental health professionals and clinicians to consider when making a diagnosis. Supplementary Information The online version contains supplementary material available at 10.1007/s11571-023-10028-2.
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Affiliation(s)
- Hui Wen Loh
- School of Science and Technology, Singapore University of Social Sciences, Singapore, Singapore
| | - Chui Ping Ooi
- School of Science and Technology, Singapore University of Social Sciences, Singapore, Singapore
| | - Shu Lih Oh
- Cogninet Australia, Sydney, NSW 2010 Australia
| | - Prabal Datta Barua
- Cogninet Australia, Sydney, NSW 2010 Australia
- Faculty of Engineering and Information Technology, University of Technology Sydney, Sydney, NSW 2007 Australia
- School of Business (Information System), University of Southern Queensland, Darling Heights, Australia
- Australian International Institute of Higher Education, Sydney, NSW 2000 Australia
- School of Science & Technology, University of New England, Armidale, Australia
- School of Biosciences, Taylor’s University, Selangor, Malaysia
- School of Computing, SRM Institute of Science and Technology, Kattankulathur, India
- School of Science and Technology, Kumamoto University, Kumamoto, Japan
- Sydney School of Education and Social work, University of Sydney, Camperdown, Australia
| | - Yi Ren Tan
- Developmental Psychiatry, Institute of Mental Health, Singapore, Singapore
| | - U. Rajendra Acharya
- School of Business (Information Systems), Faculty of Business, Education, Law & Arts, University of Southern Queensland, Darling Heights, Australia
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, Australia
- Centre for Health Research, University of Southern Queensland, Springfield, Australia
| | - Daniel Shuen Sheng Fung
- Developmental Psychiatry, Institute of Mental Health, Singapore, Singapore
- Lee Kong Chian School of Medicine, DUKE NUS Medical School, Yong Loo Lin School of Medicine, Nanyang Technological University, National University of Singapore, Singapore, Singapore
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Salazar de Pablo G, Iniesta R, Bellato A, Caye A, Dobrosavljevic M, Parlatini V, Garcia-Argibay M, Li L, Cabras A, Haider Ali M, Archer L, Meehan AJ, Suleiman H, Solmi M, Fusar-Poli P, Chang Z, Faraone SV, Larsson H, Cortese S. Individualized prediction models in ADHD: a systematic review and meta-regression. Mol Psychiatry 2024:10.1038/s41380-024-02606-5. [PMID: 38783054 DOI: 10.1038/s41380-024-02606-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 04/30/2024] [Accepted: 05/09/2024] [Indexed: 05/25/2024]
Abstract
There have been increasing efforts to develop prediction models supporting personalised detection, prediction, or treatment of ADHD. We overviewed the current status of prediction science in ADHD by: (1) systematically reviewing and appraising available prediction models; (2) quantitatively assessing factors impacting the performance of published models. We did a PRISMA/CHARMS/TRIPOD-compliant systematic review (PROSPERO: CRD42023387502), searching, until 20/12/2023, studies reporting internally and/or externally validated diagnostic/prognostic/treatment-response prediction models in ADHD. Using meta-regressions, we explored the impact of factors affecting the area under the curve (AUC) of the models. We assessed the study risk of bias with the Prediction Model Risk of Bias Assessment Tool (PROBAST). From 7764 identified records, 100 prediction models were included (88% diagnostic, 5% prognostic, and 7% treatment-response). Of these, 96% and 7% were internally and externally validated, respectively. None was implemented in clinical practice. Only 8% of the models were deemed at low risk of bias; 67% were considered at high risk of bias. Clinical, neuroimaging, and cognitive predictors were used in 35%, 31%, and 27% of the studies, respectively. The performance of ADHD prediction models was increased in those models including, compared to those models not including, clinical predictors (β = 6.54, p = 0.007). Type of validation, age range, type of model, number of predictors, study quality, and other type of predictors did not alter the AUC. Several prediction models have been developed to support the diagnosis of ADHD. However, efforts to predict outcomes or treatment response have been limited, and none of the available models is ready for implementation into clinical practice. The use of clinical predictors, which may be combined with other type of predictors, seems to improve the performance of the models. A new generation of research should address these gaps by conducting high quality, replicable, and externally validated models, followed by implementation research.
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Affiliation(s)
- Gonzalo Salazar de Pablo
- Department of Child and Adolescent Psychiatry, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
- Child and Adolescent Mental Health Services, South London and Maudsley NHS Foundation Trust, London, UK
- Institute of Psychiatry and Mental Health. Department of Child and Adolescent Psychiatry, Hospital General Universitario Gregorio Marañón School of Medicine, Universidad Complutense, Instituto de Investigación Sanitaria Gregorio Marañón (IiSGM), CIBERSAM, Madrid, Spain
| | - Raquel Iniesta
- Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neurosciences, King's College London, London, UK
- King's Institute for Artificial Intelligence, King's College London, London, UK
| | - Alessio Bellato
- School of Psychology, University of Nottingham, Nottingham, Malaysia
- Centre for Innovation in Mental Health-Developmental Lab, School of Psychology, University of Southampton, Southampton, UK
- School of Psychology, University of Southampton, Southampton, UK
| | - Arthur Caye
- Post-Graduate Program of Psychiatry, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brazil
- National Center for Research and Innovation (CISM), University of São Paulo, São Paulo, Brazil
- ADHD Outpatient Program, Hospital de Clínicas de Porto Alegre, Porto Alegre, Brazil
| | - Maja Dobrosavljevic
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
| | - Valeria Parlatini
- Department of Child and Adolescent Psychiatry, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, UK
- Centre for Innovation in Mental Health-Developmental Lab, School of Psychology, University of Southampton, Southampton, UK
- School of Psychology, University of Southampton, Southampton, UK
- Solent NHS Trust, Southampton, UK
| | - Miguel Garcia-Argibay
- Centre for Innovation in Mental Health-Developmental Lab, School of Psychology, University of Southampton, Southampton, UK
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Lin Li
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Anna Cabras
- Department of Neurology and Psychiatry, University of Rome La Sapienza, Rome, Italy
| | - Mian Haider Ali
- Department of Biostatistics and Health Informatics, Institute of Psychiatry, Psychology and Neurosciences, King's College London, London, UK
| | - Lucinda Archer
- Institute of Applied Health Research, University of Birmingham, Birmingham, UK
- National Institute for Health and Care Research (NIHR), Birmingham Biomedical Research Centre, Birmingham, UK
| | - Alan J Meehan
- Department of Psychology, Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
- Yale Child Study Center, Yale School of Medicine, New Haven, CT, USA
| | - Halima Suleiman
- Departments of Psychiatry and of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, Syracuse, NY, USA
| | - Marco Solmi
- Centre for Innovation in Mental Health-Developmental Lab, School of Psychology, University of Southampton, Southampton, UK
- Department of Psychiatry, University of Ottawa, Ottawa, ON, Canada
- Department of Mental Health, The Ottawa Hospital, Ottawa, ON, Canada
- Hospital Research Institute (OHRI) Clinical Epidemiology Program University of Ottawa, Ontario, ON, Canada
- School of Epidemiology and Public Health, Faculty of Medicine, University of Ottawa, Ottawa, ON, Canada
- Department of Child and Adolescent Psychiatry, Charité Universitätsmedizin, Berlin, Germany
| | - Paolo Fusar-Poli
- Early Psychosis: Interventions and Clinical-detection (EPIC) Lab, Department of Psychosis Studies, Institute of Psychiatry, Psychology & Neuroscience, King's College London, London, UK
- Department of Brain and Behavioral Sciences, University of Pavia, Pavia, Italy
- Outreach and Support in South-London (OASIS) service, South London and Maudsley NHS Foundation Trust, London, UK
- Department of Psychiatry and Psychotherapy, University Hospital, Ludwig-Maximilian-University (LMU), Munich, Germany
| | - Zheng Chang
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Stephen V Faraone
- Departments of Psychiatry and of Neuroscience and Physiology, SUNY Upstate Medical University, Syracuse, Syracuse, NY, USA
| | - Henrik Larsson
- School of Psychology, University of Southampton, Southampton, UK
- School of Medical Sciences, Faculty of Medicine and Health, Örebro University, Örebro, Sweden
- Department of Medical Epidemiology and Biostatistics, Karolinska Institutet, Stockholm, Sweden
| | - Samuele Cortese
- Centre for Innovation in Mental Health-Developmental Lab, School of Psychology, University of Southampton, Southampton, UK.
- Solent NHS Trust, Southampton, UK.
- Clinical and Experimental Sciences (CNS and Psychiatry), Faculty of Medicine, University of Southampton, Southampton, UK.
- Hassenfeld Children's Hospital at NYU Langone, New York University Child Study Center, New York City, NY, USA.
- DiMePRe-J-Department of Precision and Rigenerative Medicine-Jonic Area, University of Bari "Aldo Moro", Bari, Italy.
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Brookshire G, Kasper J, Blauch NM, Wu YC, Glatt R, Merrill DA, Gerrol S, Yoder KJ, Quirk C, Lucero C. Data leakage in deep learning studies of translational EEG. Front Neurosci 2024; 18:1373515. [PMID: 38765672 PMCID: PMC11099244 DOI: 10.3389/fnins.2024.1373515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2024] [Accepted: 04/04/2024] [Indexed: 05/22/2024] Open
Abstract
A growing number of studies apply deep neural networks (DNNs) to recordings of human electroencephalography (EEG) to identify a range of disorders. In many studies, EEG recordings are split into segments, and each segment is randomly assigned to the training or test set. As a consequence, data from individual subjects appears in both the training and the test set. Could high test-set accuracy reflect data leakage from subject-specific patterns in the data, rather than patterns that identify a disease? We address this question by testing the performance of DNN classifiers using segment-based holdout (in which segments from one subject can appear in both the training and test set), and comparing this to their performance using subject-based holdout (where all segments from one subject appear exclusively in either the training set or the test set). In two datasets (one classifying Alzheimer's disease, and the other classifying epileptic seizures), we find that performance on previously-unseen subjects is strongly overestimated when models are trained using segment-based holdout. Finally, we survey the literature and find that the majority of translational DNN-EEG studies use segment-based holdout. Most published DNN-EEG studies may dramatically overestimate their classification performance on new subjects.
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Affiliation(s)
| | - Jake Kasper
- SPARK Neuro Inc., New York, NY, United States
| | - Nicholas M. Blauch
- SPARK Neuro Inc., New York, NY, United States
- Neuroscience Institute, Carnegie Mellon University, Pittsburgh, PA, United States
| | | | - Ryan Glatt
- Pacific Brain Health Center, Pacific Neuroscience Institute and Foundation, Santa Monica, CA, United States
| | - David A. Merrill
- Pacific Brain Health Center, Pacific Neuroscience Institute and Foundation, Santa Monica, CA, United States
- Saint John's Cancer Institute at Providence Saint John's Health Center, Santa Monica, CA, United States
- Psychiatry and Biobehavioral Sciences, Semel Institute for Neuroscience and Human Behavior, David Geffen School of Medicine at University of California, Los Angeles, Los Angeles, CA, United States
| | | | | | - Colin Quirk
- SPARK Neuro Inc., New York, NY, United States
| | - Ché Lucero
- SPARK Neuro Inc., New York, NY, United States
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Li G, Zarei MA, Alibakhshi G, Labbafi A. Teachers and educators' experiences and perceptions of artificial-powered interventions for autism groups. BMC Psychol 2024; 12:199. [PMID: 38605422 PMCID: PMC11010416 DOI: 10.1186/s40359-024-01664-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 03/15/2024] [Indexed: 04/13/2024] Open
Abstract
BACKGROUND Artificial intelligence-powered interventions have emerged as promising tools to support autistic individuals. However, more research must examine how teachers and educators perceive and experience these AI systems when implemented. OBJECTIVES The first objective was to investigate informants' perceptions and experiences of AI-empowered interventions for children with autism. Mainly, it explores the informants' perceived benefits and challenges of using AI-empowered interventions and their recommendations for avoiding the perceived challenges. METHODOLOGY A qualitative phenomenological approach was used. Twenty educators and parents with experience implementing AI interventions for autism were recruited through purposive sampling. Semi-structured and focus group interviews conducted, transcribed verbatim, and analyzed using thematic analysis. FINDINGS The analysis identified four major themes: perceived benefits of AI interventions, implementation challenges, needed support, and recommendations for improvement. Benefits included increased engagement and personalized learning. Challenges included technology issues, training needs, and data privacy concerns. CONCLUSIONS AI-powered interventions show potential to improve autism support, but significant challenges must be addressed to ensure effective implementation from an educator's perspective. The benefits of personalized learning and student engagement demonstrate the potential value of these technologies. However, with adequate training, technical support, and measures to ensure data privacy, many educators will likely find integrating AI systems into their daily practices easier. IMPLICATIONS To realize the full benefits of AI for autism, developers must work closely with educators to understand their needs, optimize implementation, and build trust through transparent privacy policies and procedures. With proper support, AI interventions can transform how autistic individuals are educated by tailoring instruction to each student's unique profile and needs.
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Affiliation(s)
- Guang Li
- School of History, Capital Normal University, Beijing, China
| | | | | | - Akram Labbafi
- Maraghe Branch, PhD Candidate of English Language Teaching, Islamic Azad University, Teheran, Iran
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5
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Alves LM, Côco KF, De Souza ML, Ciarelli PM. Identifying ADHD and subtypes through microstates analysis and complex networks. Med Biol Eng Comput 2024; 62:687-700. [PMID: 37985601 DOI: 10.1007/s11517-023-02948-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 10/11/2023] [Indexed: 11/22/2023]
Abstract
The diagnosis of attention-deficit hyperactivity disorder (ADHD) is based on the health history and on the evaluation of questionnaires to identify symptoms. This evaluation can be subjective and lengthy, especially in children. Therefore, a biomarker would be of great value to assist mental health professionals in the process of diagnosing ADHD. Event-related potential (ERP) is one of the most informative and dynamic methods of monitoring cognitive processes. Previous works suggested that specific sets of ERP-microstates are selectively affected by ADHD. This paper proposes a new methodology for the ERP-microstate analysis and identification of ADHD patients based on complex networks to model the microstate topographic maps. The analysis of global and local features of ERP-microstate networks revealed topological differences between ADHD and healthy control. The classification using a neural network with a single hidden layer resulted in an average accuracy of 99.72% in binary classification and 99.31% in the classification of ADHD subtypes. The results were compared to the power band spectral densities and the energy of wavelet coefficients. The temporal features of ERP-microstates, such as frequency of occurrence, duration, coverage, and transition probabilities, were also evaluated for comparison proposes. Overall, the selected topological features of ERP-microstate networks derived from the proposed method performed significantly better classification results. The results suggest that topological features of ERP-microstate networks are promising to identify ADHD and its subtypes with a neural network model compared to power band spectrum density, wavelet transform, and temporal features of ERP-microstates.
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Affiliation(s)
- Lorraine Marques Alves
- Department of Electrical Engineering, Universidade Federal do Espírito Santo, Av. Fernando Ferrari, Vitória, 100190, ES, Brazil.
| | - Klaus Fabian Côco
- Department of Electrical Engineering, Universidade Federal do Espírito Santo, Av. Fernando Ferrari, Vitória, 100190, ES, Brazil
| | - Mariane Lima De Souza
- Department of Psychology, Universidade Federal do Espírito Santo, Av. Fernando Ferrari, Vitória, 100190, ES, Brazil
| | - Patrick Marques Ciarelli
- Department of Electrical Engineering, Universidade Federal do Espírito Santo, Av. Fernando Ferrari, Vitória, 100190, ES, Brazil
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Sanchis J, García-Ponsoda S, Teruel MA, Trujillo J, Song IY. A novel approach to identify the brain regions that best classify ADHD by means of EEG and deep learning. Heliyon 2024; 10:e26028. [PMID: 38379973 PMCID: PMC10877365 DOI: 10.1016/j.heliyon.2024.e26028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 01/10/2024] [Accepted: 02/06/2024] [Indexed: 02/22/2024] Open
Abstract
Objective Attention-Deficit Hyperactivity Disorder (ADHD) is one of the most widespread neurodevelopmental disorders diagnosed in childhood. ADHD is diagnosed by following the guidelines of Diagnostic and Statistical Manual of Mental Disorders, Fifth Edition (DSM-5). According to DSM-5, ADHD has not yet identified a specific cause, and thus researchers continue to investigate this field. Therefore, the primary objective of this work is to present a study to find the subset of channels or brain regions that best classify ADHD vs Typically Developing children by means of Electroencephalograms (EEG). Methods To achieve this goal, we present a novel approach to identify the brain regions that best classify ADHD using EEG and Deep Learning (DL). First, we perform a filtering and artefact removal process on the EEG signal. Then we generate different subsets of EEG channels depending on their location on the scalp (hemispheres, lobes, sets of lobes and single channels) and using backward and forward stepwise feature selection methods. Finally, we feed the DL neural network with each set, and compute the f 1 -score. Results and conclusions Based on the obtained results, the Frontal Lobe (FL) (0.8081 f 1 -score) and the Left Hemisphere (LH) (0.8056 f 1 -score) provide more significant information detecting individuals with ADHD, than using the entire set of EEG Channels (0.8067 f 1 -score). However, when combining the Temporal, Parietal and Occipital Lobes (TL, PL, OL), better results (0.8097 f 1 -score) were obtained compared with using only the FL and LH subsets. The best performance was obtained using Feature Selection Methods. In the case of the Backward Stepwise Feature Selection method, a combination of 14 EEG channels yielded a 0.8281 f 1 -score. Similarly, using the Forward Stepwise Feature Selection method, a combination of 11 EEG channels yielded a 0.8271 f 1 -score. These findings hold significant value for physicians in the quest to better understand the underlying causes of ADHD.
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Affiliation(s)
- Javier Sanchis
- Lucentia Research Group - Department of Software and Computing Systems, University of Alicante, Carretera de San Vicente del Raspeig, s/n, San Vicente del Raspeig, 03690, Spain
| | - Sandra García-Ponsoda
- Lucentia Research Group - Department of Software and Computing Systems, University of Alicante, Carretera de San Vicente del Raspeig, s/n, San Vicente del Raspeig, 03690, Spain
- ValgrAI - Valencian Graduate School and Research Network of Artificial Intelligence, Camí de Vera s/n, 46022, Valencia, Spain
| | - Miguel A. Teruel
- Lucentia Research Group - Department of Software and Computing Systems, University of Alicante, Carretera de San Vicente del Raspeig, s/n, San Vicente del Raspeig, 03690, Spain
- Alicante Institute for Health and Biomedical Research (ISABIAL), Alicante, Spain
| | - Juan Trujillo
- Lucentia Research Group - Department of Software and Computing Systems, University of Alicante, Carretera de San Vicente del Raspeig, s/n, San Vicente del Raspeig, 03690, Spain
- Alicante Institute for Health and Biomedical Research (ISABIAL), Alicante, Spain
| | - Il-Yeol Song
- College of Information Science and Technology, Drexel University, 3141 Chestnut Street, Philadelphia, USA
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Chugh N, Aggarwal S, Balyan A. The Hybrid Deep Learning Model for Identification of Attention-Deficit/Hyperactivity Disorder Using EEG. Clin EEG Neurosci 2024; 55:22-33. [PMID: 37682533 DOI: 10.1177/15500594231193511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 09/09/2023]
Abstract
Common misbehavior among children that prevents them from paying attention to tasks and interacting with their surroundings appropriately is attention-deficit/hyperactivity disorder (ADHD). Studies of children's behavior presently face a significant problem in the early and timely diagnosis of this disease. To diagnose this disease, doctors often use the patient's description and questionnaires, psychological tests, and the patient's behavior in which reliability is questionable. Convolutional neural network (CNN) is one deep learning technique that has been used for the diagnosis of ADHD. CNN, however, does not account for how signals change over time, which leads to low classification performances and ambiguous findings. In this study, the authors designed a hybrid deep learning model that combines long-short-term memory (LSTM) and CNN to simultaneously extract and learn the spatial features and long-term dependencies of the electroencephalography (EEG) data. The effectiveness of the proposed hybrid deep learning model was assessed using 2 publicly available EEG datasets. The suggested model achieves a classification accuracy of 98.86% on the ADHD dataset and 98.28% on the FOCUS dataset, respectively. The experimental findings show that the proposed hybrid CNN-LSTM model outperforms the state-of-the-art methods to diagnose ADHD using EEG. Hence, the proposed hybrid CNN-LSTM model could therefore be utilized to help with the clinical diagnosis of ADHD patients.
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Affiliation(s)
- Nupur Chugh
- Netaji Subhas Institute of Technology, New Delhi, India
| | - Swati Aggarwal
- Netaji Subhas University of Technology, New Delhi, India
| | - Arnav Balyan
- Netaji Subhas Institute of Technology, New Delhi, India
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Li S, Yang B, Dou Y, Wang Y, Ma J, Huang C, Zhang Y, Cao P. Aided diagnosis of cervical spondylotic myelopathy using deep learning methods based on electroencephalography. Med Eng Phys 2023; 121:104069. [PMID: 37985026 DOI: 10.1016/j.medengphy.2023.104069] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 10/11/2023] [Accepted: 11/05/2023] [Indexed: 11/22/2023]
Abstract
Cervical spondylotic myelopathy (CSM) is the most severe type of cervical spondylosis. It is challenging to achieve early diagnosis with current clinical diagnostic tools. In this paper, we propose an end-to-end deep learning approach for early diagnosis of CSM. Electroencephalography (EEG) experiments were conducted with patients having spinal cord cervical spondylosis and age-matched normal subjects. A Convolutional Neural Network with Long Short-Term Memory Networks (CNN-LSTM) model was employed for the classification of patients versus normal individuals. In contrast, a Convolutional Neural Network with Bidirectional Long Short-Term Memory Networks and attention mechanism (CNN-BiLSTM-attention) model was used to classify regular, mild, and severe patients. The models were trained using focal Loss instead of traditional cross-entropy Loss, and cross-validation was performed. Our method achieved a classification accuracy of 92.5 % for the two-class classification among 40 subjects and 72.2 % for the three-class classification among 36 subjects. Furthermore, we observed that the proposed model outperformed traditional EEG decoding models. This paper presents an effective computer-aided diagnosis method that eliminates the need for manual extraction of EEG features and holds potential for future auxiliary diagnosis of spinal cord-type cervical spondylosis.
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Affiliation(s)
- Shen Li
- School of Medicine, Shanghai University, Shanghai, 200444, China
| | - Banghua Yang
- School of Medicine, Shanghai University, Shanghai, 200444, China; School of Mechatronic Engineering and Automation, Shanghai University, Shanghai, 200444, China.
| | - Yibo Dou
- Department of Cervical Surgery, The Second Affiliated Hospital of the Naval Medical University, Shanghai, 200003, China
| | - Yongli Wang
- Department of Cervical Surgery, The Second Affiliated Hospital of the Naval Medical University, Shanghai, 200003, China
| | - Jun Ma
- School of Medicine, Shanghai University, Shanghai, 200444, China
| | - Chi Huang
- Department of Cervical Surgery, The Second Affiliated Hospital of the Naval Medical University, Shanghai, 200003, China
| | - Yonghuai Zhang
- Shanghai Shaonao Sensing Company Ltd., Shanghai, 200444, China
| | - Peng Cao
- Department of Cervical Surgery, The Second Affiliated Hospital of the Naval Medical University, Shanghai, 200003, China.
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9
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Parsa M, Rad HY, Vaezi H, Hossein-Zadeh GA, Setarehdan SK, Rostami R, Rostami H, Vahabie AH. EEG-based classification of individuals with neuropsychiatric disorders using deep neural networks: A systematic review of current status and future directions. COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE 2023; 240:107683. [PMID: 37406421 DOI: 10.1016/j.cmpb.2023.107683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Revised: 05/23/2023] [Accepted: 06/18/2023] [Indexed: 07/07/2023]
Abstract
The use of deep neural networks for electroencephalogram (EEG) classification has rapidly progressed and gained popularity in recent years, but automatic feature extraction from EEG signals remains a challenging task. The classification of neuropsychiatric disorders demands the extraction of neuro-markers for use in automated EEG classification. Numerous advanced deep learning algorithms can be used for this purpose. In this article, we present a comprehensive review of the main factors and parameters that affect the performance of deep neural networks in classifying different neuropsychiatric disorders using EEG signals. We also analyze the EEG features used for improving classification performance. Our analysis includes 82 scientific journal papers that applied deep neural networks for subject-wise classification based on EEG signals. We extracted information on the EEG dataset and types of disorders, deep neural network structures, performance, and hyperparameters. The results show that most studies have focused on clinical classification, achieving an average accuracy of 91.83 ± 7.34, with convolutional neural networks (CNNs) being the most frequently used network architecture and resting-state EEG signals being the most commonly used data type. Additionally, the review reveals that depression (N = 18), Alzheimer's (N = 11), and schizophrenia (N = 11) were studied more frequently than other types of neuropsychiatric disorders. Our review provides insight into the performance of deep neural networks in EEG classification and highlights the importance of EEG feature extraction in improving classification accuracy. By identifying the main factors and parameters that affect deep neural network performance in EEG classification, our review can guide future research in this area. We hope that our findings will encourage further exploration of deep learning methods for EEG classification and contribute to the development of more accurate and effective methods for diagnosing and monitoring neuropsychiatric disorders using EEG signals.
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Affiliation(s)
- Mohsen Parsa
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Habib Yousefi Rad
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Hadi Vaezi
- School of Electrical and Computer Engineering, College of Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran; School of Cognitive Sciences, Institute for Research in Fundamental Sciences, Artesh Highway, P.O. Box 19568-36484, Tehran, Iran
| | - Gholam-Ali Hossein-Zadeh
- Control and Intelligent Processing Center of Excellence, Faculty of Electrical and Computer Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran
| | - Seyed Kamaledin Setarehdan
- Control and Intelligent Processing Center of Excellence, Faculty of Electrical and Computer Engineering, University of Tehran, North Kargar St., P.O. Box 14395/515, Tehran, Iran
| | - Reza Rostami
- Faculty of Psychology and Education, University of Tehran, Jalal-Al-e-Ahmed, P.O. Box 14155-6456, Tehran, Iran
| | - Hana Rostami
- ACNC, Atieh Clinical Neuroscience Center, Valiasr St., P.O. Box 19697-13663, Tehran, Iran
| | - Abdol-Hossein Vahabie
- Faculty of Psychology and Education, University of Tehran, Jalal-Al-e-Ahmed, P.O. Box 14155-6456, Tehran, Iran; Cognitive Systems Laboratory, Control and Intelligent Processing Center of Excellence (CIPCE), School of Electrical and Computer Engineering, College of Engineering, University of Tehran, P.O. Box 14395/515, Tehran, Iran; Pasargad Institute for Advanced Innovative Solutions (PIAIS), Tehran, Iran.
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10
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He Y, Wang X, Yang Z, Xue L, Chen Y, Ji J, Wan F, Mukhopadhyay SC, Men L, Tong MCF, Li G, Chen S. Classification of attention deficit/hyperactivity disorder based on EEG signals using a EEG-Transformer model ∗. J Neural Eng 2023; 20:056013. [PMID: 37683665 DOI: 10.1088/1741-2552/acf7f5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2023] [Accepted: 09/08/2023] [Indexed: 09/10/2023]
Abstract
Objective. Attention-deficit/hyperactivity disorder (ADHD) is the most common neurodevelopmental disorder in adolescents that can seriously impair a person's attention function, cognitive processes, and learning ability. Currently, clinicians primarily diagnose patients based on the subjective assessments of the Diagnostic and Statistical Manual of Mental Disorders-5, which can lead to delayed diagnosis of ADHD and even misdiagnosis due to low diagnostic efficiency and lack of well-trained diagnostic experts. Deep learning of electroencephalogram (EEG) signals recorded from ADHD patients could provide an objective and accurate method to assist physicians in clinical diagnosis.Approach. This paper proposes the EEG-Transformer deep learning model, which is based on the attention mechanism in the traditional Transformer model, and can perform feature extraction and signal classification processing for the characteristics of EEG signals. A comprehensive comparison was made between the proposed transformer model and three existing convolutional neural network models.Main results. The results showed that the proposed EEG-Transformer model achieved an average accuracy of 95.85% and an average AUC value of 0.9926 with the fastest convergence speed, outperforming the other three models. The function and relationship of each module of the model are studied by ablation experiments. The model with optimal performance was identified by the optimization experiment.Significance. The EEG-Transformer model proposed in this paper can be used as an auxiliary tool for clinical diagnosis of ADHD, and at the same time provides a basic model for transferable learning in the field of EEG signal classification.
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Affiliation(s)
- Yuchao He
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
| | - Xin Wang
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
| | - Zijian Yang
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
| | - Lingbin Xue
- Department of Otorhinolaryngology, Head and Neck Surgery, The Chinese University of Hong Kong, Hong Kong Special Administrative Region of China 000000, People's Republic of China
| | - Yuming Chen
- School of Psychology, Shenzhen University, Shenzhen 518060, People's Republic of China
| | - Junyu Ji
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Shenzhen College of Advanced Technology, University of Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
| | - Feng Wan
- Faculty of Science and Technology, University of Macau, Macau 999078, People's Republic of China
| | | | - Lina Men
- Department of Neonatology, Shenzhen Children's Hospital, Shenzhen 518034, People's Republic of China
| | - Michael Chi Fai Tong
- Department of Otorhinolaryngology, Head and Neck Surgery, The Chinese University of Hong Kong, Hong Kong Special Administrative Region of China 000000, People's Republic of China
| | - Guanglin Li
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
| | - Shixiong Chen
- CAS Key Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, People's Republic of China
- Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems, Shenzhen, Guangdong 518055, People's Republic of China
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11
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Kasim Ö. Identification of attention deficit hyperactivity disorder with deep learning model. Phys Eng Sci Med 2023; 46:1081-1090. [PMID: 37191853 DOI: 10.1007/s13246-023-01275-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 05/05/2023] [Indexed: 05/17/2023]
Abstract
This article explores the detection of Attention Deficit Hyperactivity Disorder, a neurobehavioral disorder, from electroencephalography signals. Due to the unstable behavior of electroencephalography signals caused by complex neuronal activity in the brain, frequency analysis methods are required to extract the hidden patterns. In this study, the feature extraction was performed with the Multitaper and Multivariate Variational Mode Decomposition methods. Then, these features were analyzed with the neighborhood component analysis and the features that contribute effectively to the classification were selected. The deep learning model including the convolution, pooling, and bidirectional long short term cell and fully connected layer was trained with the selected features. The trained model could effectively classify the subjects with Attention Deficit Hyperactivity Disorder with a deep learning model, support vector machines and linear discriminant analysis. The experiments were validated with an Attention Deficit Hyperactivity Disorder open access dataset ( https://doi.org/10.21227/rzfh-zn36 ). In validation, the deep learning model was able to classify 1210 test samples (600 subjects in the control group as Normal and 610 subjects in the ADHD group as ADHD) in 0.1 s with an accuracy of 95.54%. This accuracy rate is quite high compared to the Linear Discriminant Analysis (76.38%) and Support Vector Machines (81.69%). Experimental results showed that the proposed approach can innovatively classify Attention Deficit Hyperactivity Disorder subjects from the Control group effectively.
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Affiliation(s)
- Ömer Kasim
- Department of Electrical and Electronics Engineering, Simav Technology Faculty, Kutahya Dumlupinar University, 43500, Kutahya, Turkey.
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12
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Amado-Caballero P, Casaseca-de-la-Higuera P, Alberola-López S, Andrés-de-Llano JM, López-Villalobos JA, Alberola-López C. Insight into ADHD diagnosis with deep learning on Actimetry: Quantitative interpretation of occlusion maps in age and gender subgroups. Artif Intell Med 2023; 143:102630. [PMID: 37673587 DOI: 10.1016/j.artmed.2023.102630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Revised: 07/19/2023] [Accepted: 07/20/2023] [Indexed: 09/08/2023]
Abstract
Attention Deficit/Hyperactivity Disorder (ADHD) is a prevalent neurodevelopmental disorder in childhood that often persists into adulthood. Objectively diagnosing ADHD can be challenging due to the reliance on subjective questionnaires in clinical assessment. Fortunately, recent advancements in artificial intelligence (AI) have shown promise in providing objective diagnoses through the analysis of medical images or activity recordings. These AI-based techniques have demonstrated accurate ADHD diagnosis; however, the growing complexity of deep learning models has introduced a lack of interpretability. These models often function as black boxes, unable to offer meaningful insights into the data patterns that characterize ADHD. OBJECTIVE This paper proposes a methodology to interpret the output of an AI-based diagnosis system for combined ADHD in age and gender-stratified populations. METHODS Our system is based on the analysis of 24 hour-long activity records using Convolutional Neural Networks (CNNs) to classify spectrograms of activity windows. These windows are interpreted using occlusion maps to highlight the time-frequency patterns explaining ADHD activity. RESULTS Significant differences in the frequency patterns between ADHD and controls both in diurnal and nocturnal activity were found for all the populations. Temporal dispersion also presented differences in the male population. CONCLUSION The proposed interpretation techniques for CNNs highlighted gender- and age-related differences between ADHD patients and controls. Leveraging these differences could potentially lead to improved diagnostic accuracy, especially if a larger and more balanced dataset is utilized. SIGNIFICANCE Our findings pave the way for the development of an AI-based diagnosis system for ADHD that offers interpretability, thereby providing valuable insights into the underlying etiology of the disease.
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Affiliation(s)
| | | | | | | | | | - Carlos Alberola-López
- Laboratorio de Procesado de Imagen (LPI), Universidad de Valladolid, Valladolid, Spain.
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Atila O, Deniz E, Ari A, Sengur A, Chakraborty S, Barua PD, Acharya UR. LSGP-USFNet: Automated Attention Deficit Hyperactivity Disorder Detection Using Locations of Sophie Germain's Primes on Ulam's Spiral-Based Features with Electroencephalogram Signals. SENSORS (BASEL, SWITZERLAND) 2023; 23:7032. [PMID: 37631569 PMCID: PMC10459515 DOI: 10.3390/s23167032] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/20/2023] [Revised: 07/27/2023] [Accepted: 08/05/2023] [Indexed: 08/27/2023]
Abstract
Anxiety, learning disabilities, and depression are the symptoms of attention deficit hyperactivity disorder (ADHD), an isogenous pattern of hyperactivity, impulsivity, and inattention. For the early diagnosis of ADHD, electroencephalogram (EEG) signals are widely used. However, the direct analysis of an EEG is highly challenging as it is time-consuming, nonlinear, and nonstationary in nature. Thus, in this paper, a novel approach (LSGP-USFNet) is developed based on the patterns obtained from Ulam's spiral and Sophia Germain's prime numbers. The EEG signals are initially filtered to remove the noise and segmented with a non-overlapping sliding window of a length of 512 samples. Then, a time-frequency analysis approach, namely continuous wavelet transform, is applied to each channel of the segmented EEG signal to interpret it in the time and frequency domain. The obtained time-frequency representation is saved as a time-frequency image, and a non-overlapping n × n sliding window is applied to this image for patch extraction. An n × n Ulam's spiral is localized on each patch, and the gray levels are acquired from this patch as features where Sophie Germain's primes are located in Ulam's spiral. All gray tones from all patches are concatenated to construct the features for ADHD and normal classes. A gray tone selection algorithm, namely ReliefF, is employed on the representative features to acquire the final most important gray tones. The support vector machine classifier is used with a 10-fold cross-validation criteria. Our proposed approach, LSGP-USFNet, was developed using a publicly available dataset and obtained an accuracy of 97.46% in detecting ADHD automatically. Our generated model is ready to be validated using a bigger database and it can also be used to detect other children's neurological disorders.
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Affiliation(s)
- Orhan Atila
- Electrical-Electronics Engineering Department, Technology Faculty, Firat University, 23119 Elazig, Turkey; (O.A.); (E.D.); (A.S.)
| | - Erkan Deniz
- Electrical-Electronics Engineering Department, Technology Faculty, Firat University, 23119 Elazig, Turkey; (O.A.); (E.D.); (A.S.)
| | - Ali Ari
- Computer Engineering Department, Engineering Faculty, Inonu University, 44280 Malatya, Turkey;
| | - Abdulkadir Sengur
- Electrical-Electronics Engineering Department, Technology Faculty, Firat University, 23119 Elazig, Turkey; (O.A.); (E.D.); (A.S.)
| | - Subrata Chakraborty
- Faculty of Science, Agriculture, Business and Law, University of New England, Armidale, NSW 2351, Australia
- Faculty of Engineering and Information Technology, University of Technology Sydney, Ultimo, NSW 2007, Australia
| | - Prabal Datta Barua
- Faculty of Science, Agriculture, Business and Law, University of New England, Armidale, NSW 2351, Australia
- Faculty of Engineering and Information Technology, University of Technology Sydney, Ultimo, NSW 2007, Australia
- School of Information Systems, University of Southern Queensland, Springfield, QLD 4300, Australia
| | - U. Rajendra Acharya
- School of Mathematics, Physics and Computing, University of Southern Queensland, Springfield, QLD 4300, Australia;
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Yu H, Wang M, Yang Q, Xu X, Zhang R, Chen X, Le W. The electrophysiological and neuropathological profiles of cerebellum in APP swe /PS1 ΔE9 mice: A hypothesis on the role of cerebellum in Alzheimer's disease. Alzheimers Dement 2023; 19:2365-2375. [PMID: 36469008 DOI: 10.1002/alz.12853] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2022] [Revised: 09/28/2022] [Accepted: 10/05/2022] [Indexed: 12/11/2022]
Abstract
We propose the hypothesis that the cerebellar electrophysiology and sleep-wake cycles may be altered at the early stage of Alzheimer's disease (AD), proceeding the amyloid-β neuropathological hallmarks. The electrophysiologic characteristics of cerebellum thereby might be served as a biomarker in the prepathological detection of AD. Sleep disturbances are common in preclinical AD patients, and the cerebellum has been implicated in sleep-wake regulation by several pioneer studies. Additionally, recent studies suggest that the structure and function of the cerebellum may be altered at the early stages of AD, indicating that the cerebellum may be involved in the disease's progression. We used APPswe /PS1ΔE9 mice as a model of AD, monitored and analyzed electroencephalogram data, and assessed neuropathological profiles in the cerebellum of AD mice. Our hypothesis may establish a linkage between the cerebellum and AD, thereby potentially providing new perspectives on the pathogenesis of the disease.
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Affiliation(s)
- Hang Yu
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Manli Wang
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Qiu Yang
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Xiaojiao Xu
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Rong Zhang
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Xi Chen
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
| | - Weidong Le
- Institute of Neurology, Sichuan Provincial People's Hospital, University of Electronic Science and Technology of China, Chengdu, China
- Chinese Academy of Sciences Sichuan Translational Medicine Research Hospital, Chengdu, China
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15
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Kianičková K, Pažitná L, Kundalia PH, Pakanová Z, Nemčovič M, Baráth P, Katrlíková E, Šuba J, Trebatická J, Katrlík J. Alterations in the Glycan Composition of Serum Glycoproteins in Attention-Deficit Hyperactivity Disorder. Int J Mol Sci 2023; 24:ijms24108745. [PMID: 37240090 DOI: 10.3390/ijms24108745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2023] [Revised: 05/04/2023] [Accepted: 05/11/2023] [Indexed: 05/28/2023] Open
Abstract
Changes in protein glycosylation are associated with most biological processes, and the importance of glycomic analysis in the research of disorders is constantly increasing, including in the neurodevelopmental field. We glycoprofiled sera in 10 children with attention-deficit hyperactivity disorder (ADHD) and 10 matching healthy controls for 3 types of samples: whole serum, sera after depletion of abundant proteins (albumin and IgG), and isolated IgG. The analytical methods used were a lectin-based glycoprotein microarray enabling high-throughput glycan analysis and matrix-assisted laser desorption/ionization time-of-flight (MALDI-TOF) mass spectrometry (MS) as a standard method for the identification of glycan structures. For microarray analysis, the samples printed on microarray slides were incubated with biotinylated lectins and detected using the fluorescent conjugate of streptavidin by a microarray scanner. In the ADHD patient samples, we found increased antennary fucosylation, decreased di-/triantennary N-glycans with bisecting N-acetylglucosamine (GlcNAc), and decreased α2-3 sialylation. The results obtained by both independent methods were consistent. The study's sample size and design do not allow far-reaching conclusions to be drawn. In any case, there is a strong demand for a better and more comprehensive diagnosis of ADHD, and the obtained results emphasize that the presented approach brings new horizons to studying functional associations of glycan alterations in ADHD.
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Affiliation(s)
- Kristína Kianičková
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Lucia Pažitná
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Paras H Kundalia
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Zuzana Pakanová
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Marek Nemčovič
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Peter Baráth
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
| | - Eva Katrlíková
- Department of Paediatric Psychiatry, Faculty of Medicine, Comenius University, The National Institute of Children's Diseases, SK-83340 Bratislava, Slovakia
| | - Ján Šuba
- Department of Paediatric Psychiatry, Faculty of Medicine, Comenius University, The National Institute of Children's Diseases, SK-83340 Bratislava, Slovakia
| | - Jana Trebatická
- Department of Paediatric Psychiatry, Faculty of Medicine, Comenius University, The National Institute of Children's Diseases, SK-83340 Bratislava, Slovakia
| | - Jaroslav Katrlík
- Institute of Chemistry, Slovak Academy of Sciences, SK-84538 Bratislava, Slovakia
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Das S, Zomorrodi R, Mirjalili M, Kirkovski M, Blumberger DM, Rajji TK, Desarkar P. Machine learning approaches for electroencephalography and magnetoencephalography analyses in autism spectrum disorder: A systematic review. Prog Neuropsychopharmacol Biol Psychiatry 2023; 123:110705. [PMID: 36574922 DOI: 10.1016/j.pnpbp.2022.110705] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 12/04/2022] [Accepted: 12/21/2022] [Indexed: 12/26/2022]
Abstract
There are growing application of machine learning models to study the intricacies of non-linear and non-stationary characteristics of electroencephalography (EEG) and magnetoencephalography (MEG) data in neurobiologically complex and heterogeneous conditions such as autism spectrum disorder (ASD). Such tools have potential diagnostic applications, and given the highly heterogeneous presentation of ASD, might prove fruitful in early detection and therefore could facilitate very early intervention. We conducted a systematic review (PROSPERO ID#CRD42021257438) by searching PubMed, EMBASE, and PsychINFO for machine learning approaches for EEG and MEG analyses in ASD. Thirty-nine studies were identified, of which the majority (18) used support vector machines for classification; other successful methods included deep learning. Thirty-seven studies were found to employ EEG and two were found to employ MEG. This systematic review indicate that machine learning methods can be used to classify ASD, predict ASD diagnosis in high-risk infants as early as 3 months of age, predict ASD symptom severity, and classify states of cognition in ASD with high accuracy. Replication studies testing validity, reproducibility and generalizability in tandem with randomized controlled trials in ASD populations will likely benefit the field.
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Affiliation(s)
- Sushmit Das
- Centre for Addiction and Mental Health, Toronto, Canada; Azrieli Adult Neurodevelopmental Centre, Centre for Addiction and Mental Health, Toronto, ON, Canada
| | - Reza Zomorrodi
- Centre for Addiction and Mental Health, Toronto, Canada; Temerty Centre for Therapeutic Brain Intervention, Centre for Addiction and Mental Health, Toronto, ON, Canada
| | - Mina Mirjalili
- Centre for Addiction and Mental Health, Toronto, Canada; Campbell Family Mental Health Research Institute, Centre for Addiction and Mental Health, Toronto, ON, Canada; Adult Neurodevelopmental and Geriatric Psychiatry Division, Centre for Addiction and Mental Health, Toronto, ON, Canada; Institute of Medical Science, University of Toronto, Toronto, ON, Canada; Vector Institute for Artificial Intelligence, Toronto, ON, Canada
| | - Melissa Kirkovski
- Cognitive Neuroscience Unit, School of Psychology, Deakin University, Geelong, Australia; Insitute for Health and Sport, Victoria University, Melbourne, Australia
| | - Daniel M Blumberger
- Centre for Addiction and Mental Health, Toronto, Canada; Department of Psychiatry, University of Toronto, Toronto, ON, Canada; Temerty Centre for Therapeutic Brain Intervention, Centre for Addiction and Mental Health, Toronto, ON, Canada
| | - Tarek K Rajji
- Centre for Addiction and Mental Health, Toronto, Canada; Department of Psychiatry, University of Toronto, Toronto, ON, Canada; Temerty Centre for Therapeutic Brain Intervention, Centre for Addiction and Mental Health, Toronto, ON, Canada
| | - Pushpal Desarkar
- Centre for Addiction and Mental Health, Toronto, Canada; Department of Psychiatry, University of Toronto, Toronto, ON, Canada; Azrieli Adult Neurodevelopmental Centre, Centre for Addiction and Mental Health, Toronto, ON, Canada; Temerty Centre for Therapeutic Brain Intervention, Centre for Addiction and Mental Health, Toronto, ON, Canada.
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Karabiber Cura O, Kocaaslan Atli S, Akan A. Attention deficit hyperactivity disorder recognition based on intrinsic time-scale decomposition of EEG signals. Biomed Signal Process Control 2023. [DOI: 10.1016/j.bspc.2022.104512] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
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18
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Anders C, Curio G, Arnrich B, Waterstraat G. Optimization of data pre-processing methods for time-series classification of electroencephalography data. NETWORK (BRISTOL, ENGLAND) 2023; 34:374-391. [PMID: 37916510 DOI: 10.1080/0954898x.2023.2263083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2023] [Accepted: 09/20/2023] [Indexed: 11/03/2023]
Abstract
The performance of time-series classification of electroencephalographic data varies strongly across experimental paradigms and study participants. Reasons are task-dependent differences in neuronal processing and seemingly random variations between subjects, amongst others. The effect of data pre-processing techniques to ameliorate these challenges is relatively little studied. Here, the influence of spatial filter optimization methods and non-linear data transformation on time-series classification performance is analyzed by the example of high-frequency somatosensory evoked responses. This is a model paradigm for the analysis of high-frequency electroencephalography data at a very low signal-to-noise ratio, which emphasizes the differences of the explored methods. For the utilized data, it was found that the individual signal-to-noise ratio explained up to 74% of the performance differences between subjects. While data pre-processing was shown to increase average time-series classification performance, it could not fully compensate the signal-to-noise ratio differences between the subjects. This study proposes an algorithm to prototype and benchmark pre-processing pipelines for a paradigm and data set at hand. Extreme learning machines, Random Forest, and Logistic Regression can be used quickly to compare a set of potentially suitable pipelines. For subsequent classification, however, machine learning models were shown to provide better accuracy.
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Affiliation(s)
- Christoph Anders
- Hasso Plattner Institute, University of Potsdam, Potsdam, Germany
| | - Gabriel Curio
- Neurophysics Group, Department of Neurology, Campus Benjamin Franklin, Berlin, Germany
- Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany
| | - Bert Arnrich
- Hasso Plattner Institute, University of Potsdam, Potsdam, Germany
| | - Gunnar Waterstraat
- Neurophysics Group, Department of Neurology, Campus Benjamin Franklin, Berlin, Germany
- Charité - Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität zu Berlin, Berlin, Germany
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Lee W, Lee D, Lee S, Jun K, Kim MS. Deep-Learning-Based ADHD Classification Using Children's Skeleton Data Acquired through the ADHD Screening Game. SENSORS (BASEL, SWITZERLAND) 2022; 23:246. [PMID: 36616844 PMCID: PMC9824773 DOI: 10.3390/s23010246] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/25/2022] [Revised: 12/19/2022] [Accepted: 12/21/2022] [Indexed: 06/17/2023]
Abstract
The identification of attention deficit hyperactivity disorder (ADHD) in children, which is increasing every year worldwide, is very important for early diagnosis and treatment. However, since ADHD is not a simple disease that can be diagnosed with a simple test, doctors require a large period of time and substantial effort for accurate diagnosis and treatment. Currently, ADHD classification studies using various datasets and machine learning or deep learning algorithms are actively being conducted for the screening diagnosis of ADHD. However, there has been no study of ADHD classification using only skeleton data. It was hypothesized that the main symptoms of ADHD, such as distraction, hyperactivity, and impulsivity, could be differentiated through skeleton data. Thus, we devised a game system for the screening and diagnosis of children's ADHD and acquired children's skeleton data using five Azure Kinect units equipped with depth sensors, while the game was being played. The game for screening diagnosis involves a robot first travelling on a specific path, after which the child must remember the path the robot took and then follow it. The skeleton data used in this study were divided into two categories: standby data, obtained when a child waits while the robot demonstrates the path; and game data, obtained when a child plays the game. The acquired data were classified using the RNN series of GRU, RNN, and LSTM algorithms; a bidirectional layer; and a weighted cross-entropy loss function. Among these, an LSTM algorithm using a bidirectional layer and a weighted cross-entropy loss function obtained a classification accuracy of 97.82%.
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20
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Wang C, Xu T, Yu W, Li T, Han H, Zhang M, Tao M. Early diagnosis of Alzheimer's disease and mild cognitive impairment based on electroencephalography: From the perspective of event related potentials and deep learning. Int J Psychophysiol 2022; 182:182-189. [DOI: 10.1016/j.ijpsycho.2022.10.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2022] [Revised: 10/21/2022] [Accepted: 10/24/2022] [Indexed: 11/06/2022]
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TMP19: A Novel Ternary Motif Pattern-Based ADHD Detection Model Using EEG Signals. Diagnostics (Basel) 2022; 12:diagnostics12102544. [PMID: 36292233 PMCID: PMC9600696 DOI: 10.3390/diagnostics12102544] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Revised: 10/14/2022] [Accepted: 10/17/2022] [Indexed: 11/18/2022] Open
Abstract
Attention deficit hyperactivity disorder (ADHD) is a common neurodevelopmental condition worldwide. In this research, we used an ADHD electroencephalography (EEG) dataset containing more than 4000 EEG signals. Moreover, these EEGs are noisy signals. A new hand-modeled EEG classification model has been proposed to separate healthy versus ADHD individuals using the EEG signals. In this model, a new ternary motif pattern (TMP) has been incorporated. We have mimicked deep learning networks to create this hand-modeled classification method. The Tunable Q Wavelet Transform (TQWT) has been utilized to generate wavelet subbands. We applied the proposed TMP and statistics to construct informative features from both raw EEG signals and wavelet bands by generating TQWT. Herein, features have been generated by 18 subbands and the original EEG signal. Thus, this model is named TMP19. The most informative features have been chosen by deploying neighborhood component analysis (NCA), and the selected features have been classified using the k-nearest neighbor (kNN) classifier. The used ADHD EEG dataset has 14 channels. Thus, these three phases—(i) feature extraction with TQWT, TMP, and statistics; (ii) feature selection by deploying NCA; and (iii) classification with kNN—have been applied to each channel. Iterative hard majority voting (IHMV) has been applied to obtain a higher and more general classification response. Our model attained 95.57% and 77.93% classification accuracies by deploying 10-fold and leave one subject out (LOSO) cross-validations, respectively.
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22
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Kim M, Kim H, Seo P, Jung KY, Kim KH. Explainable Machine-Learning-Based Characterization of Abnormal Cortical Activities for Working Memory of Restless Legs Syndrome Patients. SENSORS (BASEL, SWITZERLAND) 2022; 22:s22207792. [PMID: 36298144 PMCID: PMC9608870 DOI: 10.3390/s22207792] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 10/07/2022] [Accepted: 10/11/2022] [Indexed: 05/31/2023]
Abstract
Restless legs syndrome (RLS) is a sensorimotor disorder accompanied by a strong urge to move the legs and an unpleasant sensation in the legs, and is known to accompany prefrontal dysfunction. Here, we aimed to clarify the neural mechanism of working memory deficits associated with RLS using machine-learning-based analysis of single-trial neural activities. A convolutional neural network classifier was developed to discriminate the cortical activities between RLS patients and normal controls. A layer-wise relevance propagation was applied to the trained classifier in order to determine the critical nodes in the input layer for the output decision, i.e., the time/location of cortical activities discriminating RLS patients and normal controls during working memory tasks. Our method provided high classification accuracy (~94%) from single-trial event-related potentials, which are known to suffer from high inter-trial/inter-subject variation and low signal-to-noise ratio, after strict separation of training/test/validation data according to leave-one-subject-out cross-validation. The determined critical areas overlapped with the cortical substrates of working memory, and the neural activities in these areas were correlated with some significant clinical scores of RLS.
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Affiliation(s)
- Minju Kim
- Department of Biomedical Engineering, College of Health Science, Yonsei University, 1, Yeonsedae-gil, Heungeop-myeon, Wonju-si 26493, Korea
| | - Hyun Kim
- Department of Biomedical Engineering, College of Health Science, Yonsei University, 1, Yeonsedae-gil, Heungeop-myeon, Wonju-si 26493, Korea
| | - Pukyeong Seo
- Department of Biomedical Engineering, College of Health Science, Yonsei University, 1, Yeonsedae-gil, Heungeop-myeon, Wonju-si 26493, Korea
| | - Ki-Young Jung
- Department of Neurology, Seoul National University Hospital, Seoul National University College of Medicine, 101, Daehak-ro, Jongno-gu, Seoul 03080, Korea
| | - Kyung Hwan Kim
- Department of Biomedical Engineering, College of Health Science, Yonsei University, 1, Yeonsedae-gil, Heungeop-myeon, Wonju-si 26493, Korea
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Adil SM, Elahi C, Patel DN, Seas A, Warman PI, Fuller AT, Haglund MM, Dunn TW. Deep Learning to Predict Traumatic Brain Injury Outcomes in the Low-Resource Setting. World Neurosurg 2022; 164:e8-e16. [PMID: 35247613 DOI: 10.1016/j.wneu.2022.02.097] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2021] [Revised: 02/22/2022] [Accepted: 02/23/2022] [Indexed: 11/23/2022]
Abstract
OBJECTIVE Traumatic brain injury (TBI) disproportionately affects low- and middle-income countries (LMICs). In these settings, accurate patient prognostication is both difficult and essential for high-quality patient care. With the ultimate goal of enhancing TBI triage in LMICs, we aim to develop the first deep learning model to predict outcomes after TBI and compare its performance with that of less complex algorithms. METHODS TBI patients' data were prospectively collected in Kampala, Uganda, from 2016 to 2020. To predict good versus poor outcome at hospital discharge, we created deep neural network, shallow neural network, and elastic-net regularized logistic regression models. Predictors included 13 easily acquirable clinical variables. We assessed model performance with 5-fold cross-validation to calculate areas under both the receiver operating characteristic curve and precision-recall curve (AUPRC), in addition to standardized partial AUPRC to focus on comparisons at clinically relevant operating points. RESULTS We included 2164 patients for model training, of which 12% had poor outcomes. The deep neural network performed best as measured by the area under the receiver operating characteristic curve (0.941) and standardized partial AUPRC in region maximizing recall (0.291), whereas the shallow neural network was best by the area under the precision-recall curve (0.770). In several other comparisons, the elastic-net regularized logistic regression was noninferior to the neural networks. CONCLUSIONS We present the first use of deep learning for TBI prognostication, with an emphasis on LMICs, where there is great need for decision support to allocate limited resources. Optimal algorithm selection depends on the specific clinical setting; deep learning is not a panacea, though it may have a role in these efforts.
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Affiliation(s)
- Syed M Adil
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Neurosurgery, Duke University Medical Center, Durham, North Carolina, USA
| | - Cyrus Elahi
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Barrow Neurological Institute, Phoenix, Arizona, USA
| | - Dev N Patel
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Neurosurgery, New York University Langone Medical Center, New York, New York, USA
| | - Andreas Seas
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, North Carolina, USA
| | - Pranav I Warman
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA
| | - Anthony T Fuller
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Neurosurgery, Duke University Medical Center, Durham, North Carolina, USA
| | - Michael M Haglund
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Neurosurgery, Duke University Medical Center, Durham, North Carolina, USA
| | - Timothy W Dunn
- Division of Global Neurosurgery and Neurology, Duke University Medical Center, Durham, North Carolina, USA; Department of Biomedical Engineering, Pratt School of Engineering, Duke University, Durham, North Carolina, USA.
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Wang C, Wang X, Jing X, Yokoi H, Huang W, Zhu M, Chen S, Li G. Towards high-accuracy classifying attention-deficit/hyperactivity disorders using CNN-LSTM model. J Neural Eng 2022; 19. [PMID: 35797967 DOI: 10.1088/1741-2552/ac7f5d] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Accepted: 07/07/2022] [Indexed: 11/12/2022]
Abstract
OBJECTIVE The neurocognitive attention functions involve the cooperation of multiple brain regions, and the defects in the cooperation will lead to attention-deficit/hyperactivity disorder (ADHD), which is one of the most common neuropsychiatric disorders for children. The current ADHD diagnosis is mainly based on a subjective evaluation that is easily biased by the experience of the clinicians and lacks the support of objective indicators. The purpose of this study is to propose a method that can effectively identify children with ADHD. APPROACH In this study, we proposed a CNN-LSTM model to solve the three-class problems of classifying ADHD, attention deficit disorder (ADD) and healthy children, based on a public EEG dataset that includes event-related potential (ERP) EEG signals of 144 children. The convolution visualization and saliency map methods were used to observe the features automatically extracted by the proposed model, which could intuitively explain how the model distinguished different groups. MAIN RESULTS The results showed that our CNN-LSTM model could achieve an accuracy as high as 98.23% in a 5-fold cross-validation method, which was significantly better than the current state-of-the-art CNN models. The features extracted by the proposed model were mainly located in the frontal and central areas, with significant differences in the time period mappings among the three different groups. The P300 and contingent negative variation (CNV) in the frontal lobe had the largest decrease in the healthy control (HC) group, and the ADD group had the smallest decrease. In the central area, only the HC group had a significant negative oscillation of CNV waves. SIGNIFICANCE The results of this study suggest that the CNN-LSTM model can effectively identify children with ADHD and its subtypes. The visualized features automatically extracted by this model could better explain the differences in the ERP response among different groups, which is more convincing than previous studies, and it could be used as more reliable neural biomarkers to help with more accurate diagnosis in the clinics.
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Affiliation(s)
- Cheng Wang
- Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences, Shenzhen University Town, Xueyuan Avenue 1068, Shenzhen, Shenzhen, Guangdong, 518055, CHINA
| | - Xin Wang
- Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences, Shenzhen University Town, Xueyuan Avenue 1068, Shenzhen, Shenzhen, 518055, CHINA
| | - Xiaobei Jing
- Chinese Academy of Sciences, Shenzhen University Town, Xueyuan Avenue 1068, Shenzhen, 518055, CHINA
| | - Hiroshi Yokoi
- Department of Mechanical and Intelligent Systems Engineering, The University of Electro-Communications, 1-5-1 Chofugaoka, Chofu, 182-8585, JAPAN
| | - Weimin Huang
- Department of Neonatology, Shenzhen Children's Hospital, 7019 Yitian Road, Futian District, Shenzhen, Shenzhen, Guangdong, 518038, CHINA
| | - Mingxing Zhu
- Harbin Institute of Technology, Shenzhen University Town, Harbin Institute of Technology campus, Shenzhen, 518055, CHINA
| | - Shixiong Chen
- Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences, Shenzhen University Town, Xueyuan Avenue 1068, Shenzhen, Guangdong, 518055, CHINA
| | - Guanglin Li
- Institute of Biomedical and Health Engineering, Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences, Xueyuan avenue 1068, Shenzhen University Town, Shenzhen 518055, Shenzhen, Guangdong, 518055, CHINA
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25
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ADHD detection using dynamic connectivity patterns of EEG data and ConvLSTM with attention framework. Biomed Signal Process Control 2022. [DOI: 10.1016/j.bspc.2022.103708] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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26
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A benchmark for prediction of psychiatric multimorbidity from resting EEG data in a large pediatric sample. Neuroimage 2022; 258:119348. [PMID: 35659998 DOI: 10.1016/j.neuroimage.2022.119348] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2021] [Revised: 05/26/2022] [Accepted: 05/31/2022] [Indexed: 11/23/2022] Open
Abstract
Psychiatric disorders are among the most common and debilitating illnesses across the lifespan and begin usually during childhood and adolescence, which emphasizes the importance of studying the developing brain. Most of the previous pediatric neuroimaging studies employed traditional univariate statistics on relatively small samples. Multivariate machine learning approaches have a great potential to overcome the limitations of these approaches. On the other hand, the vast majority of existing multivariate machine learning studies have focused on differentiating between children with an isolated psychiatric disorder and typically developing children. However, this line of research does not reflect the real-life situation as the majority of children with a clinical diagnosis have multiple psychiatric disorders (multimorbidity), and consequently, a clinician has the task to choose between different diagnoses and/or the combination of multiple diagnoses. Thus, the goal of the present benchmark is to predict psychiatric multimorbidity in children and adolescents. For this purpose, we implemented two kinds of machine learning benchmark challenges: The first challenge targets the prediction of the seven most prevalent DSM-V psychiatric diagnoses for the available data set, of which each individual can exhibit multiple ones concurrently (i.e. multi-task multi-label classification). Based on behavioral and cognitive measures, a second challenge focuses on predicting psychiatric symptom severity on a dimensional level (i.e. multiple regression task). For the present benchmark challenges, we will leverage existing and future data from the biobank of the Healthy Brain Network (HBN) initiative, which offers a unique large-sample dataset (N = 2042) that provides a wide array of different psychiatric developmental disorders and true hidden data sets. Due to limited real-world practicability and economic viability of MRI measurements, the present challenge will permit only resting state EEG data and demographic information to derive predictive models. We believe that a community driven effort to derive predictive markers from these data using advanced machine learning algorithms can help to improve the diagnosis of psychiatric developmental disorders.
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27
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Loh HW, Ooi CP, Barua PD, Palmer EE, Molinari F, Acharya UR. Automated detection of ADHD: Current trends and future perspective. Comput Biol Med 2022; 146:105525. [DOI: 10.1016/j.compbiomed.2022.105525] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2022] [Revised: 03/31/2022] [Accepted: 04/04/2022] [Indexed: 12/25/2022]
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Machine learning models effectively distinguish attention-deficit/hyperactivity disorder using event-related potentials. Cogn Neurodyn 2022; 16:1335-1349. [PMID: 36408064 PMCID: PMC9666608 DOI: 10.1007/s11571-021-09746-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/18/2020] [Revised: 07/18/2021] [Accepted: 10/29/2021] [Indexed: 11/30/2022] Open
Abstract
Accurate diagnosis of Attention-Deficit/Hyperactivity Disorder (ADHD) is a significant challenge. Misdiagnosis has significant negative medical side effects. Due to the complex nature of this disorder, there is no computational expert system for diagnosis. Recently, automatic diagnosis of ADHD by machine learning analysis of brain signals has received an increased attention. This paper aimed to achieve an accurate model to discriminate between ADHD patients and healthy controls by pattern discovery. Event-Related Potentials (ERP) data were collected from ADHD patients and healthy controls. After pre-processing, ERP signals were decomposed and features were calculated for different frequency bands. The classification was carried out based on each feature using seven machine learning algorithms. Important features were then selected and combined. To find specific patterns for each model, the classification was repeated using the proposed patterns. Results indicated that the combination of complementary features can significantly improve the performance of the predictive models. The newly developed features, defined based on band power, were able to provide the best classification using the Generalized Linear Model, Logistic Regression, and Deep Learning with the average accuracy and Receiver operating characteristic curve > %99.85 and > 0.999, respectively. High and low frequencies (Beta, Delta) performed better than the mid, frequencies in the discrimination of ADHD from control. Altogether, this study developed a machine learning expert system that minimises misdiagnosis of ADHD and is beneficial for the evaluation of treatment efficacy.
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29
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Artificial Intelligence Enabled Personalised Assistive Tools to Enhance Education of Children with Neurodevelopmental Disorders-A Review. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19031192. [PMID: 35162220 PMCID: PMC8835076 DOI: 10.3390/ijerph19031192] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Revised: 01/07/2022] [Accepted: 01/10/2022] [Indexed: 11/26/2022]
Abstract
Mental disorders (MDs) with onset in childhood or adolescence include neurodevelopmental disorders (NDDs) (intellectual disability and specific learning disabilities, such as dyslexia, attention deficit disorder (ADHD), and autism spectrum disorders (ASD)), as well as a broad range of mental health disorders (MHDs), including anxiety, depressive, stress-related and psychotic disorders. There is a high co-morbidity of NDDs and MHDs. Globally, there have been dramatic increases in the diagnosis of childhood-onset mental disorders, with a 2- to 3-fold rise in prevalence for several MHDs in the US over the past 20 years. Depending on the type of MD, children often grapple with social and communication deficits and difficulties adapting to changes in their environment, which can impact their ability to learn effectively. To improve outcomes for children, it is important to provide timely and effective interventions. This review summarises the range and effectiveness of AI-assisted tools, developed using machine learning models, which have been applied to address learning challenges in students with a range of NDDs. Our review summarises the evidence that AI tools can be successfully used to improve social interaction and supportive education. Based on the limitations of existing AI tools, we provide recommendations for the development of future AI tools with a focus on providing personalised learning for individuals with NDDs.
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30
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ADHD classification using auto-encoding neural network and binary hypothesis testing. Artif Intell Med 2022; 123:102209. [PMID: 34998510 DOI: 10.1016/j.artmed.2021.102209] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2021] [Revised: 10/11/2021] [Accepted: 11/03/2021] [Indexed: 11/21/2022]
Abstract
Attention Deficit Hyperactivity Disorder (ADHD) is a highly prevalent neurodevelopmental disease of school-age children. Early diagnosis is crucial for ADHD treatment, wherein its neurobiological diagnosis (or classification) is helpful and provides the objective evidence to clinicians. The existing ADHD classification methods suffer two problems, i.e., insufficient data and feature noise disturbance from other associated disorders. As an attempt to overcome these difficulties, a novel deep-learning classification architecture based on a binary hypothesis testing framework and a modified auto-encoding (AE) network is proposed in this paper. The binary hypothesis testing framework is introduced to cope with insufficient data of ADHD database. Brain functional connectivities (FCs) of test data (without seeing their labels) are incorporated during feature selection along with those of training data and affect the sequential deep learning procedure under binary hypotheses. On the other hand, the modified AE network is developed to capture more effective features from training data, such that the difference of inter- and intra-class variability scores between binary hypotheses can be enlarged and effectively alleviate the disturbance of feature noise. On the test of ADHD-200 database, our method significantly outperforms the existing classification methods. The average accuracy reaches 99.6% with the leave-one-out cross validation. Our method is also more robust and practically convenient for ADHD classification due to its uniform parameter setting across various datasets.
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31
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Nenning KH, Langs G. Machine learning in neuroimaging: from research to clinical practice. RADIOLOGIE (HEIDELBERG, GERMANY) 2022; 62:1-10. [PMID: 36044070 PMCID: PMC9732070 DOI: 10.1007/s00117-022-01051-1] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Accepted: 07/07/2022] [Indexed: 12/14/2022]
Abstract
Neuroimaging is critical in clinical care and research, enabling us to investigate the brain in health and disease. There is a complex link between the brain's morphological structure, physiological architecture, and the corresponding imaging characteristics. The shape, function, and relationships between various brain areas change during development and throughout life, disease, and recovery. Like few other areas, neuroimaging benefits from advanced analysis techniques to fully exploit imaging data for studying the brain and its function. Recently, machine learning has started to contribute (a) to anatomical measurements, detection, segmentation, and quantification of lesions and disease patterns, (b) to the rapid identification of acute conditions such as stroke, or (c) to the tracking of imaging changes over time. As our ability to image and analyze the brain advances, so does our understanding of its intricate relationships and their role in therapeutic decision-making. Here, we review the current state of the art in using machine learning techniques to exploit neuroimaging data for clinical care and research, providing an overview of clinical applications and their contribution to fundamental computational neuroscience.
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Affiliation(s)
- Karl-Heinz Nenning
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute, Orangeburg, NY, USA
- Department of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Lab, Medical University of Vienna, Währinger Gürtel 18-20, 1090, Vienna, Austria
| | - Georg Langs
- Department of Biomedical Imaging and Image-guided Therapy, Computational Imaging Research Lab, Medical University of Vienna, Währinger Gürtel 18-20, 1090, Vienna, Austria.
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32
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Yeom HG, Jeong H. F-Value Time-Frequency Analysis: Between-Within Variance Analysis. Front Neurosci 2021; 15:729449. [PMID: 34955709 PMCID: PMC8697975 DOI: 10.3389/fnins.2021.729449] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2021] [Accepted: 11/22/2021] [Indexed: 11/23/2022] Open
Abstract
Studies on brain mechanisms enable us to treat various brain diseases and develop diverse technologies for daily life. Therefore, an analysis method of neural signals is critical, as it provides the basis for many brain studies. In many cases, researchers want to understand how neural signals change according to different conditions. However, it is challenging to find distinguishing characteristics, and doing so requires complex statistical analysis. In this study, we propose a novel analysis method, FTF (F-value time-frequency) analysis, that applies the F-value of ANOVA to time-frequency analysis. The proposed method shows the statistical differences among conditions in time and frequency. To evaluate the proposed method, electroencephalography (EEG) signals were analyzed using the proposed FTF method. The EEG signals were measured during imagined movement of the left hand, right hand, foot, and tongue. The analysis revealed the important characteristics which were different among different conditions and similar within the same condition. The FTF analysis method will be useful in various fields, as it allows researchers to analyze how frequency characteristics vary according to different conditions.
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Affiliation(s)
- Hong Gi Yeom
- Department of Electronics Engineering, Chosun University, Gwangju, South Korea
| | - Hyundoo Jeong
- Department of Mechatronics Engineering, Incheon National University, Incheon, South Korea
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33
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Macpherson T, Churchland A, Sejnowski T, DiCarlo J, Kamitani Y, Takahashi H, Hikida T. Natural and Artificial Intelligence: A brief introduction to the interplay between AI and neuroscience research. Neural Netw 2021; 144:603-613. [PMID: 34649035 DOI: 10.1016/j.neunet.2021.09.018] [Citation(s) in RCA: 29] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2021] [Revised: 09/15/2021] [Accepted: 09/21/2021] [Indexed: 10/20/2022]
Abstract
Neuroscience and artificial intelligence (AI) share a long history of collaboration. Advances in neuroscience, alongside huge leaps in computer processing power over the last few decades, have given rise to a new generation of in silico neural networks inspired by the architecture of the brain. These AI systems are now capable of many of the advanced perceptual and cognitive abilities of biological systems, including object recognition and decision making. Moreover, AI is now increasingly being employed as a tool for neuroscience research and is transforming our understanding of brain functions. In particular, deep learning has been used to model how convolutional layers and recurrent connections in the brain's cerebral cortex control important functions, including visual processing, memory, and motor control. Excitingly, the use of neuroscience-inspired AI also holds great promise for understanding how changes in brain networks result in psychopathologies, and could even be utilized in treatment regimes. Here we discuss recent advancements in four areas in which the relationship between neuroscience and AI has led to major advancements in the field; (1) AI models of working memory, (2) AI visual processing, (3) AI analysis of big neuroscience datasets, and (4) computational psychiatry.
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Affiliation(s)
- Tom Macpherson
- Laboratory for Advanced Brain Functions, Institute for Protein Research, Osaka University, Osaka, Japan
| | - Anne Churchland
- Cold Spring Harbor Laboratory, Neuroscience, Cold Spring Harbor, NY, USA
| | - Terry Sejnowski
- Computational Neurobiology Laboratory, Salk Institute for Biological Studies, CA, USA; Division of Biological Sciences, University of California San Diego, CA, USA
| | - James DiCarlo
- Brain and Cognitive Sciences, Massachusetts Institute of Technology, MA, USA
| | - Yukiyasu Kamitani
- Department of Neuroinformatics, ATR Computational Neuroscience Laboratories, Kyoto, Japan; Graduate School of Informatics, Kyoto University, Kyoto, Japan
| | - Hidehiko Takahashi
- Department of Psychiatry and Behavioral Sciences, Tokyo Medical and Dental University Graduate School, Tokyo, Japan
| | - Takatoshi Hikida
- Laboratory for Advanced Brain Functions, Institute for Protein Research, Osaka University, Osaka, Japan.
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34
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A Novel Knowledge Distillation-Based Feature Selection for the Classification of ADHD. Biomolecules 2021; 11:biom11081093. [PMID: 34439759 PMCID: PMC8393979 DOI: 10.3390/biom11081093] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2021] [Revised: 07/21/2021] [Accepted: 07/21/2021] [Indexed: 01/17/2023] Open
Abstract
Attention Deficit Hyperactivity Disorder (ADHD) is a brain disorder with characteristics such as lack of concentration, excessive fidgeting, outbursts of emotions, lack of patience, difficulty in organizing tasks, increased forgetfulness, and interrupting conversation, and it is affecting millions of people worldwide. There is, until now, not a gold standard test using which an ADHD expert can differentiate between an individual with ADHD and a healthy subject, making accurate diagnosis of ADHD a challenging task. We are proposing a Knowledge Distillation-based approach to search for discriminating features between the ADHD and healthy subjects. Learned embeddings from a large neural network, trained on the functional connectivity features, were fed to one hidden layer Autoencoder for reproduction of the embeddings using the same connectivity features. Finally, a forward feature selection algorithm was used to select a combination of most discriminating features between the ADHD and the Healthy Controls. We achieved promising classification results for each of the five individual sites. A combined accuracy of 81% in KKI, 60% Peking, 56% in NYU, 64% NI, and 56% OHSU and individual site wise accuracy of 72% in KKI, 60% Peking, 73% in NYU, 70% NI, and 71% OHSU were obtained using our extracted features. Our results also outperformed state-of-the-art methods in literature which validates the efficacy of our proposed approach.
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35
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de Bardeci M, Ip CT, Olbrich S. Deep learning applied to electroencephalogram data in mental disorders: A systematic review. Biol Psychol 2021; 162:108117. [PMID: 33991592 DOI: 10.1016/j.biopsycho.2021.108117] [Citation(s) in RCA: 19] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Revised: 04/19/2021] [Accepted: 05/10/2021] [Indexed: 12/12/2022]
Abstract
In recent medical research, tremendous progress has been made in the application of deep learning (DL) techniques. This article systematically reviews how DL techniques have been applied to electroencephalogram (EEG) data for diagnostic and predictive purposes in conducting research on mental disorders. EEG-studies on psychiatric diseases based on the ICD-10 or DSM-V classification that used either convolutional neural networks (CNNs) or long -short-term-memory (LSTMs) networks for classification were searched and examined for the quality of the information they contained in three domains: clinical, EEG-data processing, and deep learning. Although we found that the description of EEG acquisition and pre-processing was sufficient in most of the studies, we found, that many of them lacked a systematic characterization of clinical features. Furthermore, many studies used misguided model selection procedures or flawed testing. It is recommended that the study of psychiatric disorders using DL in the future must improve the quality of clinical data and follow state of the art model selection and testing procedures so as to achieve a higher research standard and head toward a clinical significance.
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Affiliation(s)
- Mateo de Bardeci
- Department for Psychiatry, Psychotherapy and Psychosomatics, Psychiatric University Hospital Zurich (PUK), Switzerland; University Hospital Zurich, Switzerland; University Zurich, Switzerland
| | - Cheng Teng Ip
- Neurobiology Research Unit, University Hospital Rigshospitalet, Copenhagen, Denmark; Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
| | - Sebastian Olbrich
- Department for Psychiatry, Psychotherapy and Psychosomatics, Psychiatric University Hospital Zurich (PUK), Switzerland; University Hospital Zurich, Switzerland; University Zurich, Switzerland.
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付 嘉, 李 丽, 闫 燕, 马 芙. [Application of deep learning assisted electronic laryngoscope in diagnosis of laryngeal leukoplakia]. LIN CHUANG ER BI YAN HOU TOU JING WAI KE ZA ZHI = JOURNAL OF CLINICAL OTORHINOLARYNGOLOGY, HEAD, AND NECK SURGERY 2021; 35:464-467. [PMID: 34304477 PMCID: PMC10128465 DOI: 10.13201/j.issn.2096-7993.2021.05.019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Subscribe] [Scholar Register] [Received: 05/28/2020] [Revised: 04/01/2021] [Indexed: 11/12/2022]
Abstract
In recent years, medical imaging technology and computer technology have made great progress. On the one hand, with the development and popularization of electronic laryngoscope, the image of electronic laryngoscope plays a very important role in the diagnosis of vocal cord lesions. On the other hand, deep learning algorithm,especially convolutional neural networkhas gradually become the first choice of medical image recognition since the foundation of deep learning algorithm. So far, deep learning algorithm has made great contributions in many disciplines. In this paper, the basic concept of deep learning, the current status of image recognition of vocal cord lesions, and the prospect of research based on deep learning in vocal cord image lesions recognition are reviewed.
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Yoo SH, Santosa H, Kim CS, Hong KS. Decoding Multiple Sound-Categories in the Auditory Cortex by Neural Networks: An fNIRS Study. Front Hum Neurosci 2021; 15:636191. [PMID: 33994978 PMCID: PMC8113416 DOI: 10.3389/fnhum.2021.636191] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Accepted: 03/31/2021] [Indexed: 11/13/2022] Open
Abstract
This study aims to decode the hemodynamic responses (HRs) evoked by multiple sound-categories using functional near-infrared spectroscopy (fNIRS). The six different sounds were given as stimuli (English, non-English, annoying, nature, music, and gunshot). The oxy-hemoglobin (HbO) concentration changes are measured in both hemispheres of the auditory cortex while 18 healthy subjects listen to 10-s blocks of six sound-categories. Long short-term memory (LSTM) networks were used as a classifier. The classification accuracy was 20.38 ± 4.63% with six class classification. Though LSTM networks' performance was a little higher than chance levels, it is noteworthy that we could classify the data subject-wise without feature selections.
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Affiliation(s)
- So-Hyeon Yoo
- School of Mechanical Engineering, Pusan National University, Busan, South Korea
| | - Hendrik Santosa
- Department of Radiology, University of Pittsburgh, Pittsburgh, PA, United States
| | - Chang-Seok Kim
- Department of Cogno-Mechatronics Engineering, Pusan National University, Busan, South Korea
| | - Keum-Shik Hong
- School of Mechanical Engineering, Pusan National University, Busan, South Korea
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38
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Diagnosis and prognosis of mental disorders by means of EEG and deep learning: a systematic mapping study. Artif Intell Rev 2021. [DOI: 10.1007/s10462-021-09986-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
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