Implementation of a Convolutional Neural Network for Eye Blink Artifacts Removal From the Electroencephalography Signal

OVME-REG: Harris hawks optimization algorithm based optimized variational mode extraction for eye blink artifact removal from EEG signal

The electroencephalogram (EEG) recordings from the human brain are useful for detecting various brain syndromes. These recordings are typically contaminated by high amplitude eye blink artifacts, which leads to deliberate misinterpretation of the EEG signal. Recently, variational mode extraction (VME) has been used to detect eye blink artifacts. But, the VME performance is impacted by the balancing parameter and center frequency selection. Therefore, this research uses two metaheuristic algorithms, particle swarm optimization and Harris hawks optimization, to determine the optimal set of the VME parameters. In the proposed method, the optimized VME (OVME) extracts the desired mode to locate the eye blink artifactual intervals. Then, the regression analysis (REG) filters the identified artifactual intervals from short EEG data segments. The significance of the proposed OVME-REG algorithm is that it is adequate for determining the optimum values of the VME algorithm. The analysis is carried out on the CHB-MIT Scalp EEG, BCI Competition, and EEG motor movement/imagery datasets. The proposed OVME-REG method provides an improved performance for suppressing single and repeated eye blink artifacts as compared to the current approaches in terms of (a) high correlation coefficient (93.08%, 87.3%, 82.17%), respectively, (b) low value of RRMSE (0.379, 0.506, 0.502), respectively, (c) high SSIM (0.892, 0.842, 0.694), and (d) low computation time and better preservation of the EEG data.

Robin's Viewer: Using deep-learning predictions to assist EEG annotation

Machine learning techniques such as deep learning have been increasingly used to assist EEG annotation, by automating artifact recognition, sleep staging, and seizure detection. In lack of automation, the annotation process is prone to bias, even for trained annotators. On the other hand, completely automated processes do not offer the users the opportunity to inspect the models' output and re-evaluate potential false predictions. As a first step toward addressing these challenges, we developed Robin's Viewer (RV), a Python-based EEG viewer for annotating time-series EEG data. The key feature distinguishing RV from existing EEG viewers is the visualization of output predictions of deep-learning models trained to recognize patterns in EEG data. RV was developed on top of the plotting library Plotly, the app-building framework Dash, and the popular M/EEG analysis toolbox MNE. It is an open-source, platform-independent, interactive web application, which supports common EEG-file formats to facilitate easy integration with other EEG toolboxes. RV includes common features of other EEG viewers, e.g., a view-slider, tools for marking bad channels and transient artifacts, and customizable preprocessing. Altogether, RV is an EEG viewer that combines the predictive power of deep-learning models and the knowledge of scientists and clinicians to optimize EEG annotation. With the training of new deep-learning models, RV could be developed to detect clinical patterns other than artifacts, for example sleep stages and EEG abnormalities.

Improved Manual Annotation of EEG Signals through Convolutional Neural Network Guidance

The development of validated algorithms for automated handling of artifacts is essential for reliable and fast processing of EEG signals. Recently, there have been methodological advances in designing machine-learning algorithms to improve artifact detection of trained professionals who usually meticulously inspect and manually annotate EEG signals. However, validation of these methods is hindered by the lack of a gold standard as data are mostly private and data annotation is time consuming and error prone. In the effort to circumvent these issues, we propose an iterative learning model to speed up and reduce errors of manual annotation of EEG. We use a convolutional neural network (CNN) to train on expert-annotated eyes-open and eyes-closed resting-state EEG data from typically developing children (n = 30) and children with neurodevelopmental disorders (n = 141). To overcome the circular reasoning of aiming to develop a new algorithm and benchmarking to a manually-annotated gold standard, we instead aim to improve the gold standard by revising the portion of the data that was incorrectly learned by the network. When blindly presented with the selected signals for re-assessment (23% of the data), the two independent expert-annotators changed the annotation in 25% of the cases. Subsequently, the network was trained on the expert-revised gold standard, which resulted in improved separation between artifacts and nonartifacts as well as an increase in balanced accuracy from 74% to 80% and precision from 59% to 76%. These results show that CNNs are promising to enhance manual annotation of EEG artifacts and can be improved further with better gold-standard data.