Editorial: Explainable Artificial Intelligence (XAI) in Systems Neuroscience

Explainable artificial intelligence for microbiome data analysis in colorectal cancer biomarker identification

Background

Colorectal cancer (CRC) is a type of tumor caused by the uncontrolled growth of cells in the mucosa lining the last part of the intestine. Emerging evidence underscores an association between CRC and gut microbiome dysbiosis. The high mortality rate of this cancer has made it necessary to develop new early diagnostic methods. Machine learning (ML) techniques can represent a solution to evaluate the interaction between intestinal microbiota and host physiology. Through explained artificial intelligence (XAI) it is possible to evaluate the individual contributions of microbial taxonomic markers for each subject. Our work also implements the Shapley Method Additive Explanations (SHAP) algorithm to identify for each subject which parameters are important in the context of CRC.

Results

The proposed study aimed to implement an explainable artificial intelligence framework using both gut microbiota data and demographic information from subjects to classify a cohort of control subjects from those with CRC. Our analysis revealed an association between gut microbiota and this disease. We compared three machine learning algorithms, and the Random Forest (RF) algorithm emerged as the best classifier, with a precision of 0.729 ± 0.038 and an area under the Precision-Recall curve of 0.668 ± 0.016. Additionally, SHAP analysis highlighted the most crucial variables in the model's decision-making, facilitating the identification of specific bacteria linked to CRC. Our results confirmed the role of certain bacteria, such as Fusobacterium, Peptostreptococcus, and Parvimonas, whose abundance appears notably associated with the disease, as well as bacteria whose presence is linked to a non-diseased state.

Discussion

These findings emphasizes the potential of leveraging gut microbiota data within an explainable AI framework for CRC classification. The significant association observed aligns with existing knowledge. The precision exhibited by the RF algorithm reinforces its suitability for such classification tasks. The SHAP analysis not only enhanced interpretability but identified specific bacteria crucial in CRC determination. This approach opens avenues for targeted interventions based on microbial signatures. Further exploration is warranted to deepen our understanding of the intricate interplay between microbiota and health, providing insights for refined diagnostic and therapeutic strategies.

Explainable AI in radiology: a white paper of the Italian Society of Medical and Interventional Radiology

The term Explainable Artificial Intelligence (xAI) groups together the scientific body of knowledge developed while searching for methods to explain the inner logic behind the AI algorithm and the model inference based on knowledge-based interpretability. The xAI is now generally recognized as a core area of AI. A variety of xAI methods currently are available to researchers; nonetheless, the comprehensive classification of the xAI methods is still lacking. In addition, there is no consensus among the researchers with regards to what an explanation exactly is and which are salient properties that must be considered to make it understandable for every end-user. The SIRM introduces an xAI-white paper, which is intended to aid Radiologists, medical practitioners, and scientists in the understanding an emerging field of xAI, the black-box problem behind the success of the AI, the xAI methods to unveil the black-box into a glass-box, the role, and responsibilities of the Radiologists for appropriate use of the AI-technology. Due to the rapidly changing and evolution of AI, a definitive conclusion or solution is far away from being defined. However, one of our greatest responsibilities is to keep up with the change in a critical manner. In fact, ignoring and discrediting the advent of AI a priori will not curb its use but could result in its application without awareness. Therefore, learning and increasing our knowledge about this very important technological change will allow us to put AI at our service and at the service of the patients in a conscious way, pushing this paradigm shift as far as it will benefit us.

Revolutionizing the Early Detection of Alzheimer's Disease through Non-Invasive Biomarkers: The Role of Artificial Intelligence and Deep Learning

Alzheimer's disease (AD) is now classified as a silent pandemic due to concerning current statistics and future predictions. Despite this, no effective treatment or accurate diagnosis currently exists. The negative impacts of invasive techniques and the failure of clinical trials have prompted a shift in research towards non-invasive treatments. In light of this, there is a growing need for early detection of AD through non-invasive approaches. The abundance of data generated by non-invasive techniques such as blood component monitoring, imaging, wearable sensors, and bio-sensors not only offers a platform for more accurate and reliable bio-marker developments but also significantly reduces patient pain, psychological impact, risk of complications, and cost. Nevertheless, there are challenges concerning the computational analysis of the large quantities of data generated, which can provide crucial information for the early diagnosis of AD. Hence, the integration of artificial intelligence and deep learning is critical to addressing these challenges. This work attempts to examine some of the facts and the current situation of these approaches to AD diagnosis by leveraging the potential of these tools and utilizing the vast amount of non-invasive data in order to revolutionize the early detection of AD according to the principles of a new non-invasive medicine era.

Objective speech intelligibility prediction using a deep learning model with continuous speech-evoked cortical auditory responses

Auditory prostheses provide an opportunity for rehabilitation of hearing-impaired patients. Speech intelligibility can be used to estimate the extent to which the auditory prosthesis improves the user’s speech comprehension. Although behavior-based speech intelligibility is the gold standard, precise evaluation is limited due to its subjectiveness. Here, we used a convolutional neural network to predict speech intelligibility from electroencephalography (EEG). Sixty-four–channel EEGs were recorded from 87 adult participants with normal hearing. Sentences spectrally degraded by a 2-, 3-, 4-, 5-, and 8-channel vocoder were used to set relatively low speech intelligibility conditions. A Korean sentence recognition test was used. The speech intelligibility scores were divided into 41 discrete levels ranging from 0 to 100%, with a step of 2.5%. Three scores, namely 30.0, 37.5, and 40.0%, were not collected. The speech features, i.e., the speech temporal envelope (ENV) and phoneme (PH) onset, were used to extract continuous-speech EEGs for speech intelligibility prediction. The deep learning model was trained by a dataset of event-related potentials (ERP), correlation coefficients between the ERPs and ENVs, between the ERPs and PH onset, or between ERPs and the product of the multiplication of PH and ENV (PHENV). The speech intelligibility prediction accuracies were 97.33% (ERP), 99.42% (ENV), 99.55% (PH), and 99.91% (PHENV). The models were interpreted using the occlusion sensitivity approach. While the ENV models’ informative electrodes were located in the occipital area, the informative electrodes of the phoneme models, i.e., PH and PHENV, were based on the occlusion sensitivity map located in the language processing area. Of the models tested, the PHENV model obtained the best speech intelligibility prediction accuracy. This model may promote clinical prediction of speech intelligibility with a comfort speech intelligibility test.