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Li Y, Webster-Wood VA, Gill JP, Sutton GP, Chiel HJ, Quinn RD. A computational neural model that incorporates both intrinsic dynamics and sensory feedback in the Aplysia feeding network. BIOLOGICAL CYBERNETICS 2024; 118:187-213. [PMID: 38769189 PMCID: PMC11289348 DOI: 10.1007/s00422-024-00991-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 05/03/2024] [Indexed: 05/22/2024]
Abstract
Studying the nervous system underlying animal motor control can shed light on how animals can adapt flexibly to a changing environment. We focus on the neural basis of feeding control in Aplysia californica. Using the Synthetic Nervous System framework, we developed a model of Aplysia feeding neural circuitry that balances neurophysiological plausibility and computational complexity. The circuitry includes neurons, synapses, and feedback pathways identified in existing literature. We organized the neurons into three layers and five subnetworks according to their functional roles. Simulation results demonstrate that the circuitry model can capture the intrinsic dynamics at neuronal and network levels. When combined with a simplified peripheral biomechanical model, it is sufficient to mediate three animal-like feeding behaviors (biting, swallowing, and rejection). The kinematic, dynamic, and neural responses of the model also share similar features with animal data. These results emphasize the functional roles of sensory feedback during feeding.
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Affiliation(s)
- Yanjun Li
- Department of Mechanical and Aerospace Engineering, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH, 44106, USA
| | - Victoria A Webster-Wood
- Department of Mechanical Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA, 15213, USA.
- Department of Biomedical Engineering, Carnegie Mellon University, 5000 Forbes Ave., Pittsburgh, PA, 15213, USA.
| | - Jeffrey P Gill
- Department of Biology, Case Western Reserve University, 2080 Adelbert Road, Cleveland, OH, 44106, USA
| | - Gregory P Sutton
- Department of Life Sciences, University of Lincoln, Brayford Pool, Lincoln, Lincolnshire, LN6 7TS, UK
| | - Hillel J Chiel
- Department of Biology, Case Western Reserve University, 2080 Adelbert Road, Cleveland, OH, 44106, USA
- Department of Neurosciences, Case Western Reserve University, 2080 Adelbert Road, Cleveland, OH, 44106, USA
- Department of Biomedical Engineering, Case Western Reserve University, 2080 Adelbert Road, Cleveland, OH, 44106, USA
| | - Roger D Quinn
- Department of Mechanical and Aerospace Engineering, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH, 44106, USA
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Arnaudon A, Reva M, Zbili M, Markram H, Van Geit W, Kanari L. Controlling morpho-electrophysiological variability of neurons with detailed biophysical models. iScience 2023; 26:108222. [PMID: 37953946 PMCID: PMC10638024 DOI: 10.1016/j.isci.2023.108222] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Revised: 07/21/2023] [Accepted: 10/12/2023] [Indexed: 11/14/2023] Open
Abstract
Variability, which is known to be a universal feature among biological units such as neuronal cells, holds significant importance, as, for example, it enables a robust encoding of a high volume of information in neuronal circuits and prevents hypersynchronizations. While most computational studies on electrophysiological variability in neuronal circuits were done with single-compartment neuron models, we instead focus on the variability of detailed biophysical models of neuron multi-compartmental morphologies. We leverage a Markov chain Monte Carlo method to generate populations of electrical models reproducing the variability of experimental recordings while being compatible with a set of morphologies to faithfully represent specifi morpho-electrical type. We demonstrate our approach on layer 5 pyramidal cells and study the morpho-electrical variability and in particular, find that morphological variability alone is insufficient to reproduce electrical variability. Overall, this approach provides a strong statistical basis to create detailed models of neurons with controlled variability.
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Affiliation(s)
- Alexis Arnaudon
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
| | - Maria Reva
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
| | - Mickael Zbili
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
| | - Henry Markram
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
| | - Werner Van Geit
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
| | - Lida Kanari
- Blue Brain Project, École Polytechnique Fédérale de Lausanne (EPFL), Campus Biotech, Geneva, Switzerland
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Wong W. A Fundamental Inequality Governing the Rate Coding Response of Sensory Neurons. BIOLOGICAL CYBERNETICS 2023; 117:285-295. [PMID: 37597017 DOI: 10.1007/s00422-023-00971-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/07/2023] [Accepted: 07/30/2023] [Indexed: 08/21/2023]
Abstract
A fundamental inequality governing the spike activity of peripheral neurons is derived and tested against auditory data. This inequality states that the steady-state firing rate must lie between the arithmetic and geometric means of the spontaneous and peak activities during adaptation. Implications towards the development of auditory mechanistic models are explored.
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Affiliation(s)
- Willy Wong
- Department of Electrical and Computer Engineering and Institute of Biomedical Engineering, University of Toronto, Toronto, M5S3G4, Canada.
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