POD-Enhanced Deep Learning-Based Reduced Order Models for the Real-Time Simulation of Cardiac Electrophysiology in the Left Atrium

A reduced order model formulation for left atrium flow: an atrial fibrillation case

A data-driven reduced order model (ROM) based on a proper orthogonal decomposition-radial basis function (POD-RBF) approach is adopted in this paper for the analysis of blood flow dynamics in a patient-specific case of atrial fibrillation (AF). The full order model (FOM) is represented by incompressible Navier-Stokes equations, discretized with a finite volume (FV) approach. Both the Newtonian and the Casson's constitutive laws are employed. The aim is to build a computational tool able to efficiently and accurately reconstruct the patterns of relevant hemodynamics indices related to the stasis of the blood in a physical parametrization framework including the cardiac output in the Newtonian case and also the plasma viscosity and the hematocrit in the non-Newtonian one. Many FOM-ROM comparisons are shown to analyze the performance of our approach as regards errors and computational speed-up.

Accelerated simulation methodologies for computational vascular flow modelling

Vascular flow modelling can improve our understanding of vascular pathologies and aid in developing safe and effective medical devices. Vascular flow models typically involve solving the nonlinear Navier-Stokes equations in complex anatomies and using physiological boundary conditions, often presenting a multi-physics and multi-scale computational problem to be solved. This leads to highly complex and expensive models that require excessive computational time. This review explores accelerated simulation methodologies, specifically focusing on computational vascular flow modelling. We review reduced order modelling (ROM) techniques like zero-/one-dimensional and modal decomposition-based ROMs and machine learning (ML) methods including ML-augmented ROMs, ML-based ROMs and physics-informed ML models. We discuss the applicability of each method to vascular flow acceleration and the effectiveness of the method in addressing domain-specific challenges. When available, we provide statistics on accuracy and speed-up factors for various applications related to vascular flow simulation acceleration. Our findings indicate that each type of model has strengths and limitations depending on the context. To accelerate real-world vascular flow problems, we propose future research on developing multi-scale acceleration methods capable of handling the significant geometric variability inherent to such problems.

A predictive surrogate model for hemodynamics and structural prediction in abdominal aorta for different physiological conditions

BACKGROUND AND OBJECTIVE

This study investigates the application of a Predictive Surrogate Model (PSM) for the prediction of the fluid and solid variables in the abdominal aorta by integrating Proper Orthogonal Decomposition (POD) and Long Short-Term Memory (LSTM) techniques.

METHODS

The Fluid-Structure Interaction (FSI) solver, which serves as the Full-Order Model (FOM), can capture the blood hemodynamics and structural mechanics precisely for a variety of physiological states, namely the rest and exercise conditions.

RESULTS

Detailed analyses have been conducted on velocity components, pressure, Wall Shear Stress (WSS), and Oscillatory Shear Index (OSI) variables. Firstly, the reconstruction error has been derived based on a specific number of POD bases to assess the Reduced Order Model (ROM). Notably, the reconstruction error for velocity components in the rest condition is one order of magnitude higher than that in the exercise condition, yet both remained below 10%. This error for pressure is even more minimal, being less than 1%.

CONCLUSIONS

The PSM is evaluated against rest and exercise conditions, exhibiting promising results despite the inherent complexities of the physiological conditions. Despite the inherent complexities of phenomena in the aorta, the predictive model demonstrates consistent error magnitudes for velocity components and wall-related indices, while solid variables show slightly higher errors.

Simultaneous data assimilation and cardiac electrophysiology model correction using differentiable physics and deep learning

Modelling complex systems, like the human heart, has made great progress over the last decades. Patient-specific models, called 'digital twins', can aid in diagnosing arrhythmias and personalizing treatments. However, building highly accurate predictive heart models requires a delicate balance between mathematical complexity, parameterization from measurements and validation of predictions. Cardiac electrophysiology (EP) models range from complex biophysical models to simplified phenomenological models. Complex models are accurate but computationally intensive and challenging to parameterize, while simplified models are computationally efficient but less realistic. In this paper, we propose a hybrid approach by leveraging deep learning to complete a simplified cardiac model from data. Our novel framework has two components, decomposing the dynamics into a physics based and a data-driven term. This construction allows our framework to learn from data of different complexity, while simultaneously estimating model parameters. First, using in silico data, we demonstrate that this framework can reproduce the complex dynamics of cardiac transmembrane potential even in the presence of noise in the data. Second, using ex vivo optical data of action potentials (APs), we demonstrate that our framework can identify key physical parameters for anatomical zones with different electrical properties, as well as to reproduce the AP wave characteristics obtained from various pacing locations. Our physics-based data-driven approach may improve cardiac EP modelling by providing a robust biophysical tool for predictions.

A Cost-Efficient Approach towards Computational Fluid Dynamics Simulations on Quantum Devices

Numerical simulations of physical systems are found in many industries, as they currently play a crucial role in product development. There are many numerical methods for solving differential equations that describe the underlying physics behind the mathematical models in the simulation, among which, the finite element method (FEM) is one of the most commonly used. Although in many applications the FEM seems to provide an acceptable solution to the problem, there are still many complex real-life processes that can be challenging to simulate numerically due to their complexity and large size. Recently, there has been a shift in research towards efficiently applying quantum algorithms in finite element analysis (FEA), as the potential and speedup that they could offer have been shown, but little to no effort has been made towards the applicability and cost efficiency of these algorithms in real-world quantum devices. In this paper, we propose a cost-efficient method for applying quantum algorithms in FEA for industrial problems post-processed by classical algorithms in order to address the limitations of available quantum hardware and their cost when accessing them through different cloud-based services. We carry this out by approximating the solution of the initially large system with a suitable quantum algorithm and using the obtained solutions to generate a set of reduced-order models (ROMs) that are much smaller in complexity and size than the original model. This allows the simulation of the original model with different parameter sets and excitations to be run efficiently on classical computers without having the need to access quantum subroutines again. This way, we have reduced the usage of quantum hardware (and thus the development cost) while still taking advantage of its quantum speedup.