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Wei Z, Feng C, Xu J, Shi X, Kang M, Wang J. Chromosome-level genome assembly of Euphorbia tirucalli (Euphorbiaceae), a highly stress-tolerant oil plant. Sci Data 2024; 11:658. [PMID: 38906925 PMCID: PMC11192743 DOI: 10.1038/s41597-024-03503-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2024] [Accepted: 06/10/2024] [Indexed: 06/23/2024] Open
Abstract
Euphorbia, one of the largest genera of flowering plants, is well-known for containing many biofuel crops. Euphorbia tirucalli, an evergreen succulent mainly native to the Africa continent but cultivated worldwide, is a promising petroleum plant with high tolerance to drought and salt stress. However, the exploration of such an important plant resource is severely hampered by the lack of a reference genome. Here, we present the chromosome-level genome assembly of E. tirucalli using PacBio HiFi sequencing and Hi-C technology. Its genome size was approximately 745.62 Mb, with a contig N50 of 74.16 Mb. A total of 743.63 Mb (99.73%) of the assembled sequences were anchored to 10 chromosomes with a complete BUSCO score of 97.80%. Genome annotation revealed 26,304 protein-coding genes, and 76.37% of the genome was identified as repeat elements. The high-quality genome provides valuable genetic resources that would be useful for unraveling the genetic mechanisms of biofuel synthesis and evolutionary adaptation of E. tirucalli.
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Affiliation(s)
- Zuoying Wei
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, China
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China
| | - Chao Feng
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangzhou, 510650, China
| | - Jiayun Xu
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, China
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China
| | - Xizuo Shi
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- University of Chinese Academy of Sciences, Beijing, China
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China
| | - Ming Kang
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangzhou, 510650, China
| | - Jing Wang
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, 510650, China.
- South China National Botanical Garden, Chinese Academy of Sciences (CAS), Guangzhou, China.
- Key Laboratory of National Forestry and Grassland Administration on Plant Conservation and Utilization in Southern China, Guangzhou, 510650, China.
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Sheng W, Liu L, Wu Y, Yin M, Yu Q, Guo X, Song H, Guo W. Exploring salt tolerance and indicator traits across four temperate lineages of the common wetland plant, Phragmites australis. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 912:169100. [PMID: 38086483 DOI: 10.1016/j.scitotenv.2023.169100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 11/11/2023] [Accepted: 12/02/2023] [Indexed: 01/18/2024]
Abstract
Common reed (Phragmites australis) is a widely utilized plant for wetland restoration and construction, facing challenges posed by high salinity as a stressor. Among the diverse P. australis lineages, functional traits variation provides a valuable genetic resource for identifying salt-tolerant individuals. However, previous investigations on P. australis salt tolerance have been restricted to regional scales, hindering the identification of key functional traits associated with salt tolerance in natural habitats. To address this gap, we conducted a greenhouse experiment to assess and compare the salt tolerance of four major temperate P. australis lineages worldwide. We utilized the maximum quantum yield of photosystem II (Fv/Fm) as a health indicator, while final biomass and wilt status served as indicators of salt tolerance across lineages. Our findings revealed significant differentiation in plant functional traits among different lineages, but no significant effect of interaction between salinity and lineage on most traits. Correlation analyses between salt-tolerance indicators and functional traits in the control group indicated that biomass, leaf width, and relative leaf water content are potential predictors of salt tolerance. However, ecological strategies, physiological traits, and latitudinal origin did not exhibit significant correlations with salt tolerance. Our study provides valuable indicator traits for effectively screening salinity-tolerant genotypes of P. australis in field settings, and holds significant potential for enhancing wetland construction and biomass production in marginal lands.
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Affiliation(s)
- Wenyi Sheng
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Lele Liu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China.
| | - Yiming Wu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Meiqi Yin
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China
| | - Qing Yu
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China; Shandong Land Development Group Co., Ltd, 2688 Aotixi Road, Jinan 250014, China
| | - Xiao Guo
- College of Landscape Architecture and Forestry, Qingdao Agricultural University, 700 Changcheng Road, Qingdao 266109, China
| | - Huijia Song
- National Natural History Museum of China, 126 Tianqiao South Street, Beijing 100050, China
| | - Weihua Guo
- Key Laboratory of Ecological Prewarning, Protection and Restoration of Bohai Sea, Ministry of Natural Resources, School of Life Sciences, Shandong University, 72 Binhai Road, Qingdao 266237, China.
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Nawaz A, Aamir F, Huang R, Haq IU, Wu F, Munir M, Chaudhary R, Rafique A, Jiang K. Co-production of biohydrogen and biomethane utilizing halophytic biomass Atriplexcrassifolia by two-stage anaerobic fermentation process. Front Chem 2023; 11:1233494. [PMID: 37483269 PMCID: PMC10360132 DOI: 10.3389/fchem.2023.1233494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 06/26/2023] [Indexed: 07/25/2023] Open
Abstract
The excessive use of fossil has resulted in the drastic exhaustion of natural energy sources, leading to environmental challenges and energy crises. Owing to rising energy demand there is a dire need to shift towards renewable energies from lignocellulosic biomass. The present study assessed the co-production of biohydrogen (H2) and biomethane (CH4) by utilizing a less explored halophyte Atriplexcrassifolia. Various reaction parameters were evaluated for their effect on biohydrogen and biomethane production in batch experiments. One parameter at a time experimental strategy was chosen for production optimization. Hydrogen and methane yields along with their production rates were assessed at different incubation times, temperatures, pH, substrate concentrations, and inoculum sizes in acidogenesis and methanogenesis stages, respectively. In the first stage, maximum cumulative hydrogen production of 66 ± 0.02 mL, with hydrogen yield of 13.2 ± 0.03 mL/g, and hydrogen production rate (HPR) of 1.37 ± 0.05 mL/h was attained when the reaction mixture (5 g Atriplexcrassifolia and 10 mL pretreated sewage sludge) was processed at 37°C and pH 5.5 after 48 h of incubation. While in the second stage, maximum cumulative methane production, i.e., 343 ± 0.12 mL, methane yield (MY) of 8.5 ± 0.07 mL/mL, and methane production rate (MPR) of 0.8 ± 0.05 mL/h was achieved after 18 days of incubation of reaction mixture (40 mL of hydrogenic slurry with 80 mL inoculum) at 45°C and pH 8. Furthermore, a 51% and 24% rise in biohydrogen and biomethane production respectively were recorded when the gases were produced at these optimized reaction conditions. The results ensure halophyte Atriplexcrassifolia as an imperative renewable energy resource and proposed that effective optimization of the process further increased the coproduction of biohydrogen and biomethane.
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Affiliation(s)
- Ali Nawaz
- School of Basic Medical Sciences and Forensic Medicine, Hangzhou Medical College, Hangzhou, China
- Institute of Industrial Biotechnology, Government College University, Lahore, Pakistan
| | - Farheen Aamir
- School of Basic Medical Sciences and Forensic Medicine, Hangzhou Medical College, Hangzhou, China
| | - Rong Huang
- School of Basic Medical Sciences and Forensic Medicine, Hangzhou Medical College, Hangzhou, China
| | - Ikram ul Haq
- Institute of Industrial Biotechnology, Government College University, Lahore, Pakistan
| | - Fangyu Wu
- School of Basic Medical Sciences and Forensic Medicine, Hangzhou Medical College, Hangzhou, China
| | - Marium Munir
- Food and Biotechnology Research Center, Pakistan Council of Scientific and Industrial Research, Lahore, Pakistan
| | - Rida Chaudhary
- Institute of Industrial Biotechnology, Government College University, Lahore, Pakistan
| | - Ayesha Rafique
- Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore, Pakistan
| | - Kankan Jiang
- School of Basic Medical Sciences and Forensic Medicine, Hangzhou Medical College, Hangzhou, China
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Pajuelo E, Flores-Duarte NJ, Navarro-Torre S, Rodríguez-Llorente ID, Mateos-Naranjo E, Redondo-Gómez S, Carrasco López JA. Culturomics and Circular Agronomy: Two Sides of the Same Coin for the Design of a Tailored Biofertilizer for the Semi-Halophyte Mesembryanthemum crystallinum. PLANTS (BASEL, SWITZERLAND) 2023; 12:2545. [PMID: 37447105 DOI: 10.3390/plants12132545] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2023] [Revised: 06/27/2023] [Accepted: 06/28/2023] [Indexed: 07/15/2023]
Abstract
According to the EU, the global consumption of biomass, fossil fuels, metals, and minerals is expected to double by 2050, while waste will increase by 70%. In this context, the Circular Economy Action Plan (CEAP) intends to integrate development and sustainability. In this regard, tailored biofertilizers based on plant growth-promoting bacteria (PGPB) can improve plant yield with fewer inputs. In our project, an autochthonous halophyte of the Andalusian marshes, namely Mesembryanthemum crystallinum, was selected for its interest as a source of pharmaceuticals and nutraceuticals. The aim of this work was to use a culturomics approach for the isolation of specific PGPB and endophytes able to promote plant growth and, eventually, modulate the metabolome of the plant. For this purpose, a specific culture medium based on M. crystallinum biomass, called Mesem Agar (MA), was elaborated. Bacteria of three compartments (rhizosphere soil, root endophytes, and shoot endophytes) were isolated on standard tryptone soy agar (TSA) and MA in order to obtain two independent collections. A higher number of bacteria were isolated on TSA than in MA (47 vs. 37). All the bacteria were identified, and although some of them were isolated in both media (Pseudomonas, Bacillus, Priestia, Rosellomorea, etc.), either medium allowed the isolation of specific members of the M. crystallinum microbiome such as Leclercia, Curtobacterium, Pantoea, Lysinibacillus, Mesobacillus, Glutamicibacter, etc. Plant growth-promoting properties and extracellular degrading activities of all the strains were determined, and distinct patterns were found in both media. The three best bacteria of each collection were selected in order to produce two different consortia, whose effects on seed germination, root colonization, plant growth and physiology, and metabolomics were analyzed. Additionally, the results of the plant metabolome revealed a differential accumulation of several primary and secondary metabolites with pharmaceutical properties. Overall, the results demonstrated the feasibility of using "low cost media" based on plant biomass to carry out a culturomics approach in order to isolate the most suitable bacteria for biofertilizers. In this way, a circular model is established in which bacteria help plants to grow, and, in turn, a medium based on plant wastes supports bacterial growth at low prices, which is the reason why this approach can be considered within the model of "circular agronomy".
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Affiliation(s)
- Eloísa Pajuelo
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, c/Profesor García González, 2, 41012 Sevilla, Spain
| | - Noris J Flores-Duarte
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, c/Profesor García González, 2, 41012 Sevilla, Spain
| | - Salvadora Navarro-Torre
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, c/Profesor García González, 2, 41012 Sevilla, Spain
| | - Ignacio D Rodríguez-Llorente
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, c/Profesor García González, 2, 41012 Sevilla, Spain
| | - Enrique Mateos-Naranjo
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, c/Profesor García González, s/n., 41012 Sevilla, Spain
| | - Susana Redondo-Gómez
- Departamento de Biología Vegetal y Ecología, Facultad de Biología, Universidad de Sevilla, c/Profesor García González, s/n., 41012 Sevilla, Spain
| | - José A Carrasco López
- Departamento de Microbiología y Parasitología, Facultad de Farmacia, Universidad de Sevilla, c/Profesor García González, 2, 41012 Sevilla, Spain
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Nkrumah PN, van der Ent A. Possible accumulation of critical metals in plants that hyperaccumulate their chemical analogues? THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 878:162791. [PMID: 36907425 DOI: 10.1016/j.scitotenv.2023.162791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/16/2022] [Revised: 03/07/2023] [Accepted: 03/07/2023] [Indexed: 05/13/2023]
Abstract
Lithium (Li), gallium (Ga) and indium (In) are industry-critical metals, with no known plant species that (hyper)accumulate these metals to any substantial degree. We hypothesised that sodium (Na) hyperaccumulators (i.e., halophytes) may accumulate Li, whilst aluminium (Al) hyperaccumulators may accumulate Ga and In, based on the chemical similarities of these elements. Experiments were conducted in hydroponics at various molar ratios for six weeks to determine accumulation in roots and shoots of the target elements. For the Li experiment, the halophytes Atriplex amnicola, Salsola australis and Tecticornia pergranulata were subjected to Na and Li treatments, whilst for the Ga and In experiment, Camellia sinensis was exposed to Al, Ga, and In. The halophytes were able to accumulate high shoot Li and Na concentrations reaching up to ~10 g Li kg-1 and 80 g Na kg-1, respectively. The translocation factors for Li were higher than for Na (about two-fold) in A. amnicola and S. australis. The results from the Ga and In experiment show that C. sinensis is capable of accumulating high concentrations of Ga (mean 150 mg Ga kg-1), comparable with Al (mean 300 mg Al kg-1), but virtually no In (<20 mg In kg-1) in its leaves. Competition between Al and Ga suggests that Ga might be taken up via Al pathways in C. sinensis. The findings suggest that there are opportunities to explore Li and Ga phytomining on respective Li- and Ga-enriched mine water/soil/mine waste materials using halophytes and Al hyperaccumulators to complement the global supply of these critical metals.
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Affiliation(s)
- Philip Nti Nkrumah
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Queensland, Australia.
| | - Antony van der Ent
- Centre for Mined Land Rehabilitation, Sustainable Minerals Institute, The University of Queensland, Queensland, Australia; Laboratoire Sols et Environnement, INRAE, Université de Lorraine, France; Laboratory of Genetics, Wageningen University and Research, The Netherlands
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Ekanayake S, Egodawatta C, Attanayake RN, Perera D. From salt pan to saucepan:
Salicornia
, a halophytic vegetable with an array of potential health benefits. FOOD FRONTIERS 2023. [DOI: 10.1002/fft2.214] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023] Open
Affiliation(s)
- Sadini Ekanayake
- Department of Bioprocess Technology, Faculty of Technology Rajarata University of Sri Lanka Mihinthale Sri Lanka
| | - Chaminda Egodawatta
- Department of Plant Sciences, Faculty of Agriculture Rajarata University of Sri Lanka Anuradhapura Sri Lanka
| | - Renuka N. Attanayake
- Department of Plant and Molecular Biology, Faculty of Science University of Kelaniya Kelaniya Sri Lanka
| | - Dinum Perera
- Department of Bioprocess Technology, Faculty of Technology Rajarata University of Sri Lanka Mihinthale Sri Lanka
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Cultivation and characterisation of Salicornia europaea, Tripolium pannonicum and Crithmum maritimum biomass for green biorefinery applications. Sci Rep 2022; 12:20507. [PMID: 36443447 PMCID: PMC9705282 DOI: 10.1038/s41598-022-24865-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2022] [Accepted: 11/22/2022] [Indexed: 11/29/2022] Open
Abstract
Salt-tolerant halophytes have shown potential for biorefinery and agricultural use in salt-affected soils, increasing the value of marginal lands. They could provide a bio-based source for compounds obtained from the petrochemical industry or an alternative for biomass currently imported overseas. Salicornia europaea, Tripolium pannonicum and Crithmum maritimum were cultivated in hydroponic systems under various salinity conditions, harvested green but not food-grade, and fractionated to green juice and fibre residue. Obtained fractions were characterised for contents of carbohydrates, Klason lignin, crude protein, organic acids, lipids, and minerals to evaluate the biomass' suitability for biorefinery. Significant differences were observed in the biomass yield and the composition of the biomass fractions from different cultivation salinities. High concentrations of crude protein were found. Thus, these species could have the potential for green protein production. Fractions rich in carbohydrates could be used for lignocellulose processing and processes utilising micro-organisms.
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Salama FM, AL-Huqail AA, Ali M, Abeed AHA. Cd Phytoextraction Potential in Halophyte Salicornia fruticosa: Salinity Impact. PLANTS 2022; 11:plants11192556. [PMID: 36235421 PMCID: PMC9570852 DOI: 10.3390/plants11192556] [Citation(s) in RCA: 14] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/09/2022] [Revised: 09/18/2022] [Accepted: 09/25/2022] [Indexed: 11/23/2022]
Abstract
The phytoextraction potential of halophytes has been broadly recognized. Nevertheless, the impact of salt on the accumulation proprieties of cadmium (Cd) in different halophytic species, likely linked to their salt tolerance, remains unclear. A hydroponic culture was used to investigate the impact of salinity on Cd tolerance as well as accumulation in the distinct halophyte Salicornia fruticosa (S. fruticosa). The plant was subjected to 0, 25, and 50 μg L−1 Cd (0-Cd, L-Cd, and H-Cd, respectively), with or without 50, 100, and 200 mM NaCl in the nutrient solution. Data demonstrated that Cd individually induced depletion in biomass accumulation. NaCl amplified the Cd tolerance induced by enhanced biomass gaining and root length, which was associated with adequate transpiration, leaf succulence, elevated levels of ascorbic acid (ASA), reduced glutathione (GSH), phytochelatins (PCs), and proline as well as antioxidant enzymatic capacity via upregulation of peroxidases (PO), glutathione peroxidase, ascorbate peroxidase, and superoxide dismutase. All Cd treatments decreased the uptake of calcium (Ca) as well as potassium (K) and transport to the shoots; however, sodium (Na) accumulation in the shoots was not influenced by Cd. Consequently, S. fruticosa retained its halophytic properties. Based on the low transfer efficiency and high enrichment coefficient at 0–50 mM NaCl, an examination of Cd accumulation characteristics revealed that phytostabilization was the selected phytoremediation strategy. At 100–200 mM NaCl, the high aboveground Cd-translocation and high absorption efficiency encourage phytoremediation via phytoextraction. The results revealed that S. fruticosa might be also potentially utilized to renovate saline soils tainted with heavy metals (HMs) because of its maximized capacity for Cd tolerance magnified by NaCl. Cd accumulation in S. fruticosa is mainly depending on the NaCl concentration. Future studies may be established for other heavy metal pollutants screening, to detect which could be extracted and/or stabilized by the S. fruticosa plant; moreover, other substrates presenting high electrical conductivity should be identified for reclamation.
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Affiliation(s)
- Fawzy Mahmoud Salama
- Department of Botany and Microbiology, Faculty of Science, Assiut University, Assiut 71516, Egypt
| | - Arwa Abdulkreem AL-Huqail
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, P.O. Box 84428, Riyadh 11671, Saudi Arabia
- Correspondence:
| | - Mohammed Ali
- Egyptian Deserts Gene Bank, North Sinai Research Station, Department of Genetic Resources, Desert Research Center, Cairo 11753, Egypt
| | - Amany H. A. Abeed
- Department of Botany and Microbiology, Faculty of Science, Assiut University, Assiut 71516, Egypt
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Yasseen BT, Al-Thani RF. Endophytes and Halophytes to Remediate Industrial Wastewater and Saline Soils: Perspectives from Qatar. PLANTS 2022; 11:plants11111497. [PMID: 35684269 PMCID: PMC9182595 DOI: 10.3390/plants11111497] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2022] [Revised: 05/20/2022] [Accepted: 05/20/2022] [Indexed: 01/22/2023]
Abstract
Many halophytes are considered to be salt hyperaccumulators, adopting ion extrusion and inclusion mechanisms. Such plants, with high aboveground biomass, may play crucial roles in saline habitats, including soil desalination and phytoremediation of polluted soils and waters. These plants cause significant changes in some of the soil’s physical and chemical properties; and have proven efficient in removing heavy metals and metabolizing organic compounds from oil and gas activities. Halophytes in Qatar, such as Halopeplis perfoliata, Salicornia europaea, Salsola soda, and Tetraena qatarensis, are shown here to play significant roles in the phytoremediation of polluted soils and waters. Microorganisms associated with these halophytes (such as endophytic bacteria) might boost these plants to remediate saline and polluted soils. A significant number of these bacteria, such as Bacillus spp. and Pseudomonas spp., are reported here to play important roles in many sectors of life. We explore the mechanisms adopted by the endophytic bacteria to promote and support these halophytes in the desalination of saline soils and phytoremediation of polluted soils. The possible roles played by endophytes in different parts of native plants are given to elucidate the mechanisms of cooperation between these native plants and the associated microorganisms.
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10
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Colette M, Guentas L, Gunkel-Grillon P, Callac N, Della Patrona L. Is halophyte species growing in the vicinity of the shrimp ponds a promising agri-aquaculture system for shrimp ponds remediation in New Caledonia? MARINE POLLUTION BULLETIN 2022; 177:113563. [PMID: 35325793 DOI: 10.1016/j.marpolbul.2022.113563] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 03/07/2022] [Accepted: 03/11/2022] [Indexed: 06/14/2023]
Abstract
Plant culture integration within aquaculture activities is a topic of recent interest with economic and environmental benefits. Shrimp farming activities generate nutrient-rich waste trapped in the sediments of farming ponds or release in the mangrove area. Thus, we investigate if the halophytes species naturally growing around the pond can use nitrogen and carbon from shrimp farming for remediation purposes. Halophyte biomasses and sediments influenced by shrimp farm effluents, were collected in two farms in New-Caledonia. All samples were analyzed for their C and N stable isotopic composition and N content. Higher δ15N values were found in plants influenced by shrimp farm water thus evidenced their abilities to take nutrient derived from shrimp farming. Deep root species Chenopodium murale, Atriplex jubata, Suaeda australis and Enchylaena tomentosa appears more efficient for shrimp pond remediation. This work demonstrates that halophytes cultivation in shrimp ponds with sediments, could be effective for the pond's remediation.
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Affiliation(s)
- Marie Colette
- French Institute for Research in the Science of the Sea (IFREMER), Research Institute for Development (IRD), University of New Caledonia, University of Reunion, CNRS, UMR 9220 ENTROPIE, Noumea, New Caledonia; Institute of Exact and Applied Sciences (ISEA), EA 7484, University of New Caledonia, 98851 Noumea, New Caledonia.
| | - Linda Guentas
- Institute of Exact and Applied Sciences (ISEA), EA 7484, University of New Caledonia, 98851 Noumea, New Caledonia.
| | - Peggy Gunkel-Grillon
- Institute of Exact and Applied Sciences (ISEA), EA 7484, University of New Caledonia, 98851 Noumea, New Caledonia.
| | - Nolwenn Callac
- French Institute for Research in the Science of the Sea (IFREMER), Research Institute for Development (IRD), University of New Caledonia, University of Reunion, CNRS, UMR 9220 ENTROPIE, Noumea, New Caledonia.
| | - Luc Della Patrona
- French Institute for Research in the Science of the Sea (IFREMER), Research Institute for Development (IRD), University of New Caledonia, University of Reunion, CNRS, UMR 9220 ENTROPIE, Noumea, New Caledonia.
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11
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Abstract
As the push for carbon-neutral transport continues, the aviation sector is facing increasing pressure to reduce its carbon footprint. Furthermore, commercial air traffic is expected to resume the continuous growth experienced until the pandemic, highlighting the need for reduced emissions. The use of alternative fuels plays a key role in achieving future emission goals, while also lowering the dependency on fossil fuels. The so-called sustainable aviation fuels (SAF), which encompass bio and synthetic fuels, are currently the most viable option, but hydrogen is also being considered as a long-term solution. The present paper reviews the production methods, logistical and technological barriers, and potential for future mass implementation of these alternative fuels. In general, biofuels currently present higher technological readiness levels than other alternatives. Sustainable mass production faces critical feedstock-related challenges that synthetic fuels, together with other solutions, can overcome. All conventional fuel replacements, though with different scopes, will be important in meeting long-term goals. Government support will play an important role in accelerating and facilitating the transition towards sustainable aviation.
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12
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Merchaoui H, Ksouri R, Abdelly C, Hanana M. Halophytes.tn: an innovative database for Tunisian halophyte plant identification, distribution and characterization. Database (Oxford) 2022; 2022:6550848. [PMID: 35305011 PMCID: PMC9216540 DOI: 10.1093/database/baab082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2021] [Revised: 10/26/2021] [Accepted: 03/14/2022] [Indexed: 11/14/2022]
Abstract
Halophytes.tn (http://halophytes.rnrt.tn/) is a web-based database of Tunisian halophyte species. Halophytes are salt-tolerant plants able to grow above 85 mM of salt, even up to 2 M as for Tecticornia spp. Tunisia, a North African country located on the Mediterranean border, covering ∼165 000 km2, harbors several types of saline habitats and biotopes where halophytes preferably vegetate. With ∼6000 worldwide and over 420 Tunisian species, halophytes represent a huge potential in several fields, including desalination, phytoremediation, agrofarming, medicinal use, industrial applications, pharmacology and even nanotechnology. We describe the practical and technical steps followed and bioinformatics tools used to conceive and design the first Tunisian halophytes database, enabling species identification and characterization. As a first version, information about botany, morphology, ecophysiology and biochemistry were provided for the identified species with their sites of growing in Tunisia, first step of biodiversity conservation, management and valorization. The database will be regularly maintained, updated and enriched to achieve the goal of whole Tunisian halophyte species and fit the needs of scientists and all category of users.Database URL: http://halophytes.rnrt.tn/
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Affiliation(s)
- Henda Merchaoui
- Faculty of Sciences of Bizerte, University of Carthage, Zarzouna 7021, Tunisia.,Laboratory of Aromatic and Medicinal Plants, Center of Biotechnology of Borj-Cedria, BP 901, Hammam-Lif 2050, Tunisia
| | - Riadh Ksouri
- Laboratory of Aromatic and Medicinal Plants, Center of Biotechnology of Borj-Cedria, BP 901, Hammam-Lif 2050, Tunisia
| | - Chedly Abdelly
- Laboratory of Extremophile Plants, Center of Biotechnology of Borj-Cedria, BP 901, Hammam-Lif 2050, Tunisia
| | - Mohsen Hanana
- Laboratory of Extremophile Plants, Center of Biotechnology of Borj-Cedria, BP 901, Hammam-Lif 2050, Tunisia
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Rawat N, Wungrampha S, Singla-Pareek SL, Yu M, Shabala S, Pareek A. Rewilding staple crops for the lost halophytism: Toward sustainability and profitability of agricultural production systems. MOLECULAR PLANT 2022; 15:45-64. [PMID: 34915209 DOI: 10.1016/j.molp.2021.12.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2021] [Revised: 12/10/2021] [Accepted: 12/12/2021] [Indexed: 06/14/2023]
Abstract
Abiotic stress tolerance has been weakened during the domestication of all major staple crops. Soil salinity is a major environmental constraint that impacts over half of the world population; however, given the increasing reliance on irrigation and the lack of available freshwater, agriculture in the 21st century will increasingly become saline. Therefore, global food security is critically dependent on the ability of plant breeders to create high-yielding staple crop varieties that will incorporate salinity tolerance traits and account for future climate scenarios. Previously, we have argued that the current agricultural practices and reliance on crops that exclude salt from uptake is counterproductive and environmentally unsustainable, and thus called for a need for a major shift in a breeding paradigm to incorporate some halophytic traits that were present in wild relatives but were lost in modern crops during domestication. In this review, we provide a comprehensive physiological and molecular analysis of the key traits conferring crop halophytism, such as vacuolar Na+ sequestration, ROS desensitization, succulence, metabolic photosynthetic switch, and salt deposition in trichomes, and discuss the strategies for incorporating them into elite germplasm, to address a pressing issue of boosting plant salinity tolerance.
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Affiliation(s)
- Nishtha Rawat
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Silas Wungrampha
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India
| | - Sneh L Singla-Pareek
- Plant Stress Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi 110067, India
| | - Min Yu
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China
| | - Sergey Shabala
- International Research Centre for Environmental Membrane Biology, Foshan University, Foshan 528000, China; Tasmanian Institute for Agriculture, University of Tasmania, Hobart Tas 7001, Australia.
| | - Ashwani Pareek
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi 110067, India; National Agri-Food Biotechnology Institute, Mohali 140306, India.
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Mishra M, Wungrampha S, Kumar G, Singla-Pareek SL, Pareek A. How do rice seedlings of landrace Pokkali survive in saline fields after transplantation? Physiology, biochemistry, and photosynthesis. PHOTOSYNTHESIS RESEARCH 2021; 150:117-135. [PMID: 32632535 DOI: 10.1007/s11120-020-00771-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2020] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
Rice, one of the most important staple food crops in the world, is highly sensitive to soil salinity at the seedling stage. The ultimate yield of this crop is a function of the number of seedlings surviving after transplantation in saline water. Oryza sativa cv. IR64 is a high-yielding salinity-sensitive variety, while Pokkali is a landrace traditionally cultivated by the local farmers in the coastal regions in India. However, the machinery responsible for the seedling-stage tolerance in Pokkali is not understood. To bridge this gap, we subjected young seedlings of these contrasting genotypes to salinity and performed detailed investigations about their growth parameters, ion homeostasis, biochemical composition, and photosynthetic parameters after every 24 h of salinity for three days. Taken together, all the physiological and biochemical indicators, such as proline accumulation, K+/Na+ ratio, lipid peroxidation, and electrolyte leakage, clearly revealed significant differences between IR64 and Pokkali under salinity, establishing their contrasting nature at this stage. In response to salinity, the Fv/Fm ratio (maximum quantum efficiency of Photosystem II as inferred from Chl a fluorescence) and the energy conserved for the electron transport after the reduction of QA (the primary electron acceptor of PSII), to QA-, and reduction of the end electron acceptor molecules towards the PSI (Photosystem I) electron acceptor side was higher in Pokkali than IR64 plants. These observations reflect a direct contribution of photosynthesis towards seedling-stage salinity tolerance in rice. These findings will help to breed high-yielding crops for salinity prone agricultural lands.
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Affiliation(s)
- Manjari Mishra
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Silas Wungrampha
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Gautam Kumar
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Sneh Lata Singla-Pareek
- Plant Stress Biology, International Centre for Genetic Engineering and Biotechnology, New Delhi, 110067, India
| | - Ashwani Pareek
- Stress Physiology and Molecular Biology Lab, School of Life Sciences, Jawaharlal Nehru University, New Delhi, 110067, India.
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LED Lighting and High-Density Planting Enhance the Cost-Efficiency of Halimione Portulacoides Extraction Units for Integrated Aquaculture. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11114995] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Halophytes are salt-tolerant plants that can be used to extract dissolved inorganic nutrients from saline aquaculture effluents under a production framework commonly known as Integrated Multi-Trophic Aquaculture (IMTA). Halimione portulacoides (L.) Aellen (common name: sea purslane) is an edible saltmarsh halophyte traditionally consumed by humans living near coastal wetlands and is considered a promising extractive species for IMTA. To better understand its potential for IMTA applications, the present study investigates how artificial lighting and plant density affect its productivity and capacity to extract nitrogen and phosphorous in hydroponic conditions that mimic aquaculture effluents. Plant growth was unaffected by the type of artificial lighting employed—white fluorescent lights vs. blue-white LEDs—but LED systems were more energy-efficient, with a 17% reduction in light energy costs. Considering planting density, high-density units of 220 plants m−2 produced more biomass per unit of area (54.0–56.6 g m−2 day−1) than did low-density units (110 plants m−2; 34.4–37.1 g m−2 day−1) and extracted more dissolved inorganic nitrogen and phosphorus. Overall, H. portulacoides can be easily cultivated hydroponically using nutrient-rich saline effluents, where LEDs can be employed as an alternative to fluorescent lighting and high-density planting can promote higher yields and extraction efficiencies.
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Halophyte Plants and Their Residues as Feedstock for Biogas Production—Chances and Challenges. APPLIED SCIENCES-BASEL 2021. [DOI: 10.3390/app11062746] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The importance of green technologies is steadily growing. Salt-tolerant plants have been proposed as energy crops for cultivation on saline lands. Halophytes such as Salicornia europaea, Tripolium pannonicum, Crithmum maritimum and Chenopodium quinoa, among many other species, can be cultivated in saline lands, in coastal areas or for treating saline wastewater, and the biomass might be used for biogas production as an integrated process of biorefining. However, halophytes have different salt tolerance mechanisms, including compartmentalization of salt in the vacuole, leading to an increase of sodium in the plant tissues. The sodium content of halophytes may have an adverse effect on the anaerobic digestion process, which needs adjustments to achieve stable and efficient conversion of the halophytes into biogas. This review gives an overview of the specificities of halophytes that needs to be accounted for using their biomass as feedstocks for biogas plants in order to expand renewable energy production. First, the different physiological mechanisms of halophytes to grow under saline conditions are described, which lead to the characteristic composition of the halophyte biomass, which may influence the biogas production. Next, possible mechanisms to avoid negative effects on the anaerobic digestion process are described, with an overview of full-scale applications. Taking all these aspects into account, halophyte plants have a great potential for biogas and methane production with yields similar to those produced by other energy crops and the simultaneous benefit of utilization of saline soils.
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Iberian Halophytes as Agroecological Solutions for Degraded Lands and Biosaline Agriculture. SUSTAINABILITY 2021. [DOI: 10.3390/su13021005] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
Research on biosaline agriculture has been increasing worldwide in recent years. In this respect, the Iberian halophyte diversity present a high-value ecological solution to be implemented for biosaline-based agroecosystems. The research on these halophytic species has been increasing worldwide and, in the recent years, especially in terms saline agriculture adaptation, osmophysiology and nutraceutical potential, highlighting the importance and potential of these species in terms of agrosolutions. The Mediterranean area has high biodiversity in terms of endemic halophytic vegetation (ca. 62 species), providing an alternative pool of potential new agricultural products to be cultivated in adverse conditions. Besides being highly diverse, most of these species are endemic and present a perennial life cycle with several applications in terms of food, forage, nutraceutical, feedstock and remediation. More specifically, the Iberian halophytic flora shows potential as resources of essential fatty acids, minerals and antioxidants—all very important for human and animal nutrition. Alongside the establishment of halophyte agroecological solutions is the provision of key ecosystem services, such as carbon sequestration and soil rehabilitation. Moreover, halophyte-based ecosystems provide additional recognized ecosystem services, beyond the final product production, by improving soil health, ecosystem biodiversity and storing large amounts of carbon, thereby increasing the ecosystem resilience to climate change and offering a green solution against climate change.
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Mathew BT, Torky Y, Amin A, Mourad AHI, Ayyash MM, El-Keblawy A, Hilal-Alnaqbi A, AbuQamar SF, El-Tarabily KA. Halotolerant Marine Rhizosphere-Competent Actinobacteria Promote Salicornia bigelovii Growth and Seed Production Using Seawater Irrigation. Front Microbiol 2020; 11:552. [PMID: 32308651 PMCID: PMC7145952 DOI: 10.3389/fmicb.2020.00552] [Citation(s) in RCA: 23] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Accepted: 03/13/2020] [Indexed: 12/12/2022] Open
Abstract
Salicornia bigelovii is a promising halophytic cash crop that grows in seawater of the intertidal zone of the west-north coast of the UAE. This study assess plant growth promoting (PGP) capabilities of halotolerant actinobacteria isolated from rhizosphere of S. bigelovii to be used as biological inoculants on seawater-irrigated S. bigelovii plants. Under laboratory conditions, a total of 39 actinobacterial strains were isolated, of which 22 were tolerant to high salinity (up to 8% w/v NaCl). These strains were further screened for their abilities to colonize S. bigelovii roots in vitro; the most promising ones that produced indole-3-acetic acid, polyamines (PA) or 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase (ACCD) were selected for rhizosphere-competency under naturally competitive environment. Three outstanding rhizosphere-competent isolates, Streptomyces chartreusis (Sc), S. tritolerans (St), and S. rochei (Sr) producing auxins, PA and ACCD, respectively, were investigated individually and as consortium (Sc/St/Sr) to determine their effects on the performance of S. bigelovii in the greenhouse. Individual applications of strains on seawater-irrigated plants significantly enhanced shoot and root dry biomass by 32.3-56.5% and 42.3-71.9%, respectively, in comparison to non-inoculated plants (control). In addition, plants individually treated with Sc, St and Sr resulted in 46.1, 60.0, and 69.1% increase in seed yield, respectively, when compared to control plants. Thus, the synergetic combination of strains had greater effects on S. bigelovii biomass (62.2 and 77.9% increase in shoot and root dry biomass, respectively) and seed yield (79.7% increase), compared to the control treatment. Our results also showed significant (P < 0.05) increases in the levels of photosynthetic pigments, endogenous auxins and PA, but a reduction in the levels of ACC in tissues of plants inoculated with Sc/St/Sr. We conclude that the consortium of isolates was the most effective treatment on S. bigelovii growth; thus confirmed by principal component and correlation analyses. To this best of our knowledge, this is the first report about halotolerant rhizosphere-competent PGP actinobacteria thriving in saline soils that can potentially contribute to promoting growth and increasing yield of S. bigelovii. These halotolerant actinobacterial strains could potentially be exploited as biofertilizers to sustain crop production in arid coastal areas.
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Affiliation(s)
- Betty T. Mathew
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Yaser Torky
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Amr Amin
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Abdel-Hamid I. Mourad
- Department of Mechanical Engineering, College of Engineering, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Mutamed M. Ayyash
- Department of Food, Nutrition and Health Sciences, College of Food and Agriculture, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Ali El-Keblawy
- Department of Applied Biology, University of Sharjah, Sharjah, United Arab Emirates
| | | | - Synan F. AbuQamar
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
| | - Khaled A. El-Tarabily
- Department of Biology, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
- Khalifa Center for Genetic Engineering and Biotechnology, United Arab Emirates University, Al-Ain, United Arab Emirates
- College of Science, Health, Engineering and Education, Murdoch University, Murdoch, WA, Australia
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Abobatta WF. Plant Responses and Tolerance to Extreme Salinity: Learning from Halophyte Tolerance to Extreme Salinity. SALT AND DROUGHT STRESS TOLERANCE IN PLANTS 2020. [DOI: 10.1007/978-3-030-40277-8_7] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/02/2022]
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Gairola S, Shabana HA, Mahmoud T, El-Keblawy A, Santo A. Evaluating germinability of eight desert halophytes under long-term seed storage: Implications for conservation. PLANT DIVERSITY 2019; 41:229-236. [PMID: 31528782 PMCID: PMC6742497 DOI: 10.1016/j.pld.2019.07.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2018] [Revised: 07/08/2019] [Accepted: 07/09/2019] [Indexed: 05/24/2023]
Abstract
Ex situ conservation in seed banks is a potential complementary conservation strategy for native plant species. It is well established that ex situ seed banking of native wild plants prolongs seed viability and thereby preserves genetic and species diversity for future use. We evaluated ex situ storage potential of eight halophytic species from deserts in the United Arab Emirates (UAE) by studying seed germination. Specifically, we examined the germinability of freshly collected seeds and seeds stored for three years in a seed bank. We also examined the effect of light conditions on fresh and stored seed germination. Fresh seeds of seven of the eight species tested had a higher germination rates under 12/12 h light/dark fluctuations than did those exposed to total darkness. Storage reduced light sensitivity in Halocnemum strobilaceum, Suaeda aegyptiaca, Salsola drummondii and Salsola imbricata, but increased the requirement for light in Arthrocnemum macrostachyum. In Anabasis setifera, storage decreased germination percentage when there was a 12-hour light/dark fluctuation, but increased germination rate when exposed to the dark treatment. Storage significantly reduced germination in both the light/dark and dark treatments in Suaeda vermiculata and S. aegyptiaca. Germination speed also responded differently to storage; whereas Timson's index significantly increased in A. macrostachyum and H. strobilaceum, it significantly decreased for S. drummondii, S. aegyptiaca and S. vermiculata. Germination of these species at a range of temperatures requires further testing; additionally, we strongly suggest that these laboratory findings be complemented by field studies.
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Affiliation(s)
- Sanjay Gairola
- Sharjah Seed Bank and Herbarium, Sharjah Research Academy, P.O. Box 60999, Sharjah, United Arab Emirates
| | - Hatem A. Shabana
- Sharjah Seed Bank and Herbarium, Sharjah Research Academy, P.O. Box 60999, Sharjah, United Arab Emirates
| | - Tamer Mahmoud
- Sharjah Seed Bank and Herbarium, Sharjah Research Academy, P.O. Box 60999, Sharjah, United Arab Emirates
| | - Ali El-Keblawy
- Department of Applied Biology, College of Sciences, University of Sharjah, P.O. Box 27272, Sharjah, United Arab Emirates
| | - Andrea Santo
- Independent Researcher, Selargius, Cagliari, Italy
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Kırtel O, Versluys M, Van den Ende W, Toksoy Öner E. Fructans of the saline world. Biotechnol Adv 2018; 36:1524-1539. [DOI: 10.1016/j.biotechadv.2018.06.009] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/08/2018] [Revised: 06/08/2018] [Accepted: 06/14/2018] [Indexed: 10/28/2022]
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Mathur S, Umakanth AV, Tonapi VA, Sharma R, Sharma MK. Sweet sorghum as biofuel feedstock: recent advances and available resources. BIOTECHNOLOGY FOR BIOFUELS 2017; 10:146. [PMID: 28603553 PMCID: PMC5465577 DOI: 10.1186/s13068-017-0834-9] [Citation(s) in RCA: 61] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 05/30/2017] [Indexed: 05/08/2023]
Abstract
Sweet sorghum is a promising target for biofuel production. It is a C4 crop with low input requirements and accumulates high levels of sugars in its stalks. However, large-scale planting on marginal lands would require improved varieties with optimized biofuel-related traits and tolerance to biotic and abiotic stresses. Considering this, many studies have been carried out to generate genetic and genomic resources for sweet sorghum. In this review, we discuss various attributes of sweet sorghum that make it an ideal candidate for biofuel feedstock, and provide an overview of genetic diversity, tools, and resources available for engineering and/or marker-assisting breeding of sweet sorghum. Finally, the progress made so far, in identification of genes/quantitative trait loci (QTLs) important for agronomic traits and ongoing molecular breeding efforts to generate improved varieties, has been discussed.
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Affiliation(s)
- Supriya Mathur
- Crop Genetics & Informatics Group, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India
| | - A. V. Umakanth
- Indian Council of Agricultural Research-Indian Institute of Millets Research, Hyderabad, India
| | - V. A. Tonapi
- Indian Council of Agricultural Research-Indian Institute of Millets Research, Hyderabad, India
| | - Rita Sharma
- Crop Genetics & Informatics Group, School of Computational and Integrative Sciences, Jawaharlal Nehru University, New Delhi, India
| | - Manoj K. Sharma
- Crop Genetics & Informatics Group, School of Biotechnology, Jawaharlal Nehru University, New Delhi, India
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Mishra A, Tanna B. Halophytes: Potential Resources for Salt Stress Tolerance Genes and Promoters. FRONTIERS IN PLANT SCIENCE 2017; 8:829. [PMID: 28572812 PMCID: PMC5435751 DOI: 10.3389/fpls.2017.00829] [Citation(s) in RCA: 107] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Accepted: 05/02/2017] [Indexed: 05/17/2023]
Abstract
Halophytes have demonstrated their capability to thrive under extremely saline conditions and thus considered as one of the best germplasm for saline agriculture. Salinity is a worldwide problem, and the salt-affected areas are increasing day-by-day because of scanty rainfall, poor irrigation system, salt ingression, water contamination, and other environmental factors. The salinity stress tolerance mechanism is a very complex phenomenon, and some pathways are coordinately linked for imparting salinity tolerance. Though a number of salt responsive genes have been reported from the halophytes, there is always a quest for promising stress-responsive genes that can modulate plant physiology according to the salt stress. Halophytes such as Aeluropus, Mesembryanthemum, Suaeda, Atriplex, Thellungiella, Cakile, and Salicornia serve as a potential candidate for the salt-responsive genes and promoters. Several known genes like antiporters (NHX, SOS, HKT, VTPase), ion channels (Cl-, Ca2+, aquaporins), antioxidant encoding genes (APX, CAT, GST, BADH, SOD) and some novel genes such as USP, SDR1, SRP etc. were isolated from halophytes and explored for developing stress tolerance in the crop plants (glycophytes). It is evidenced that stress triggers salt sensors that lead to the activation of stress tolerance mechanisms which involve multiple signaling proteins, up- or down-regulation of several genes, and finally the distinctive or collective effects of stress-responsive genes. In this review, halophytes are discussed as an excellent platform for salt responsive genes which can be utilized for developing salinity tolerance in crop plants through genetic engineering.
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Affiliation(s)
- Avinash Mishra
- Marine Biotechnology and Ecology Division, Central Salt and Marine Chemicals Research Institute (CSIR)Bhavnagar, India
- Academy of Scientific and Innovative Research, Council of Scientific and Industrial ResearchNew Delhi, India
| | - Bhakti Tanna
- Marine Biotechnology and Ecology Division, Central Salt and Marine Chemicals Research Institute (CSIR)Bhavnagar, India
- Academy of Scientific and Innovative Research, Council of Scientific and Industrial ResearchNew Delhi, India
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