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Zhao X, Wang S, Zhang H, Dong S, Chen J, Sun Y, Zhang Y, Liu Q. Genome-wide identification, expression analysis of the R2R3-MYB gene family and their potential roles under cold stress in Prunus sibirica. BMC Genomics 2024; 25:953. [PMID: 39402463 PMCID: PMC11472476 DOI: 10.1186/s12864-024-10868-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2024] [Accepted: 10/04/2024] [Indexed: 10/19/2024] Open
Abstract
BACKGROUND The R2R3-MYB transcription factors in plants participate in various physiological and biochemical processes and responds to various external stimuli. Prunus sibirica (known as Siberian apricot) is a drupe tree species that produces extremely high nutritional value kernels. However, it is susceptiblility to frost damage during the flowering period, results in a marked reduction in kernel yield. RESULTS In this study, the MYB gene family of P. sibirica (PsMYB) was systematically analyzed, and 116 R2R3-MYB genes that were distributed unevenly over eight chromosomes were ultimately screened. Phylogenetic analysis divided these 116 genes into 30 subgroups. We discovered that 37 PsMYBs had cold stress-responsive promoters, and six PsMYBs were annotated to be associated with cold response. Intraspecific homology analysis identified segmental duplication as the primary gene amplification mechanism, and homology analysis of the PsMYB genes with those of five other species revealed phylogenetic relationships with Rosaceae species. Protein interaction studies revealed collaborative regulation of the PsMYB proteins with Arabidopsis protein, and transcriptome analysis identified PsMYB genes that were highly expressed at low temperatures. Additionally, the expression levels of 22 PsMYBs in different tissue parts of P. sibirica and under different low-temperature stress conditions were evaluated using quantitative real-time PCR, with the results verifying that PsMYBs are specifically expressed in different plant parts and may be involved in the growth and development of P. sibirica species. Genes upregulated after exposure to low-temperature stress and likely involved in cold response were identified. CONCLUSION This study lays a foundation for understanding the molecular biology of PsMYBs in P. sibirica and provides a theoretical basis for the future study of transgenic lines with cold resistance during the flowering period of this tree.
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Affiliation(s)
- Xin Zhao
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Shipeng Wang
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Hongrui Zhang
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Shengjun Dong
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Jianhua Chen
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Yongqiang Sun
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China
| | - Yueyuan Zhang
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China
| | - Quangang Liu
- College of Forestry, Shenyang Agricultural University, Shenyang, 110866, China.
- Key Laboratory for Silviculture of Liaoning Province, Shenyang Agricultural University, Shenyang, 110866, China.
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Wang X, Wang Y, Jiang Y, Wang H, Zhou L, Li F, Wang L, Jiang J, Chen F, Chen S. Transcription factor CmHSFA4-CmMYBS3 complex enhances salt tolerance in chrysanthemum by repressing CmMYB121 expression. PLANT PHYSIOLOGY 2024; 195:3119-3135. [PMID: 38668629 DOI: 10.1093/plphys/kiae238] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 03/06/2024] [Indexed: 08/02/2024]
Abstract
Excessive soil salinity not only hampers plant growth and development but can also lead to plant death. Previously, we found that heat-shock factor A4 (CmHSFA4) enhances the tolerance of chrysanthemum (Chrysanthemum morifolium) to salt. However, the underlying molecular mechanism remains unclear. In this study, we identified a candidate MYB transcription factor, CmMYB121, which responded to salt stress. We observed that the CmMYB121 transcription is suppressed by CmHSFA4. Moreover, overexpression of CmMYB121 exacerbated chrysanthemum sensitivity to salt stress. CmHSFA4 directly bound to the promoter of CmMYB121 at the heat-shock element. Protein-protein interaction assays identified an interaction between CmHSFA4 and CmMYBS3, a transcriptional repressor, and recruited the corepressor TOPLESS (CmTPL) to inhibit CmMYB121 transcription by impairing the H3 and H4 histone acetylation levels of CmMYB121. Our study demonstrated that a CmHSFA4-CmMYBS3-CmTPL complex modulates CmMYB121 expression, consequently regulating the tolerance of chrysanthemum to salt. The findings shed light on the responses of plants to salt stress.
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Affiliation(s)
- Xinhui Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Yue Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Yuhan Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Han Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Lijie Zhou
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Fei Li
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Likai Wang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Jiafu Jiang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Fadi Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
| | - Sumei Chen
- State Key Laboratory of Crop Genetics and Germplasm Enhancement/Key Laboratory of Flower Biology and Germplasm Innovation, Ministry of Agriculture and Rural Affairs/Key Laboratory of Biology of Ornamental Plants in East China, National Forestry and Grassland Administration/College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China
- Zhongshan Biological Breeding Laboratory, Nanjing, Jiangsu 210014, China
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Li Z, Zhi Y, Li W, Lei J, Huang Z, Li H, Qian S. Bioaccumulation Characteristics of Typical Perfluoroalkyl Compounds in Alfalfa Under Salt Stress. BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY 2024; 112:24. [PMID: 38180582 DOI: 10.1007/s00128-023-03850-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 12/12/2023] [Indexed: 01/06/2024]
Abstract
Medicago sativa, commonly known as alfalfa, is widely distributed worldwide, known for its strong stress resistance and well-developed root system, making it an important plant in ecological restoration research. To investigate the absorption and transport characteristics of alfalfa for typical perfluoroalkyl substances (PFAS) under salt stress, a 30-day indoor greenhouse experiment was conducted. The results showed that alfalfa exhibited varying degrees of absorption and transport for the selected PFAS. The highest BCF (Bioconcentration Factor) for shoot tissue reached 725.4 (for PFBA), and the highest TF (Translocation Factor) reached 53.8 (for PFPeA). Different PFAS compounds exhibited distinct bioaccumulation behaviors, with short-chain PFAS more readily entering the plant's root system and being transported upwards, while long-chain PFAS tended to adsorb to the surface of the root system. Furthermore, salt stress did not significantly affect the uptake of PFAS by alfalfa. This suggests that alfalfa is salt-tolerant and holds great potential for ecological restoration in short-chain PFAS-contaminated sites.
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Affiliation(s)
- Zhengwei Li
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Yue Zhi
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Wei Li
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Jiamin Lei
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Zhiqiang Huang
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Haoran Li
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China
| | - Shenhua Qian
- Key Laboratory of the Three Gorges Reservoir Region's Eco-Environment, Ministry of Education, Chongqing University, Chongqing, 400045, China.
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