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Shen M, Wu L, Zhang Y, You R, Xiao J, Kang Y. Leaf litter from Cynanchum auriculatum Royle ex Wight leads to root rot outbreaks by Fusarium solani, hindering continuous cropping. FEMS Microbiol Ecol 2024; 100:fiae068. [PMID: 38684466 PMCID: PMC11099666 DOI: 10.1093/femsec/fiae068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 04/18/2024] [Accepted: 04/25/2024] [Indexed: 05/02/2024] Open
Abstract
Cynanchum auriculatum Royle ex Wight (CA) is experiencing challenges with continuous cropping obstacle (CCO) due to soil-borne fungal pathogens. The leaf litter from CA is regularly incorporated into the soil after root harvesting, but the impact of this practice on pathogen outbreaks remains uncertain. In this study, a fungal strain D1, identified as Fusarium solani, was isolated and confirmed as a potential factor in CCO. Both leave extract (LE) and root extract (RE) were found to inhibit seed germination and the activities of plant defense-related enzymes. The combinations of extracts and D1 exacerbated these negative effects. Beyond promoting the proliferation of D1 in soil, the extracts also enhanced the hypha weight, spore number, and spore germination rate of D1. Compared to RE, LE exhibited a greater degree of promotion in the activities of pathogenesis-related enzymes in D1. Additionally, caffeic acid and ferulic acid were identified as potential active compounds. LE, particularly in combination with D1, induced a shift in the composition of fungal communities rather than bacterial communities. These findings indicate that the water extract of leaf litter stimulated the growth and proliferation of fungal strain D1, thereby augmenting its pathogenicity toward CA and ultimately contributing to the CCO process.
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Affiliation(s)
- Min Shen
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, 241000, China
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, Jiangsu, 224007, China
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, Yancheng Teachers University, Yancheng, 224007, China
| | - Limeng Wu
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, Jiangsu, 224007, China
| | - Yanzhou Zhang
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, Jiangsu, 224007, China
| | - Ruiqiang You
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, Jiangsu, 224007, China
| | - Jiaxin Xiao
- College of Life Sciences, Anhui Normal University, Wuhu, Anhui, 241000, China
| | - Yijun Kang
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Yancheng Teachers University, Yancheng, Jiangsu, 224007, China
- Jiangsu Key Laboratory for Bioresources of Saline Soils, Jiangsu Provincial Key Laboratory of Coastal Wetland Bioresources and Environmental Protection, Yancheng Teachers University, Yancheng, 224007, China
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Somboon S, Rossopa B, Yodda S, Sukitprapanon TS, Chidthaisong A, Lawongsa P. Mitigating methane emissions and global warming potential while increasing rice yield using biochar derived from leftover rice straw in a tropical paddy soil. Sci Rep 2024; 14:8706. [PMID: 38622195 PMCID: PMC11018614 DOI: 10.1038/s41598-024-59352-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 04/09/2024] [Indexed: 04/17/2024] Open
Abstract
The sustainable management of leftover rice straw through biochar production to mitigate CH4 emissions and enhance rice yield remains uncertain and undefined. Therefore, we evaluated the effects of using biochar derived from rice straw left on fields after harvest on greenhouse gas emissions, global warming potential (GWP), and rice yield in the paddy field. The experiment included three treatments: chemical fertilizer (CF), rice straw (RS, 10 t ha-1) + CF, and rice straw-derived biochar (BC, 3 t ha-1 based on the amount of product remaining after pyrolysis) + CF. Compared with CF, BC + CF significantly reduced cumulative CH4 and CO2 emissions, net GWP, and greenhouse gas emission intensity by 42.9%, 37.4%, 39.5%, and 67.8%, respectively. In contrast, RS + CF significantly increased cumulative CH4 emissions and net GWP by 119.3% and 13.8%, respectively. The reduced CH4 emissions were mainly caused by the addition of BC + CF, which did not increase the levels of dissolved organic carbon and microbial biomass carbon, consequently resulting in reduced archaeal abundance, unlike those observed in RS + CF. The BC + CF also enhanced soil total organic carbon content and rice grain yield. This study indicated that using biochar derived from leftover rice straw mitigates greenhouse gas emissions and improves rice productivity in tropical paddy soil.
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Affiliation(s)
- Saowalak Somboon
- Department of Soil Science and Environment, Faculty of Agriculture, Khon Kaen University, Khon Kaen, 40002, Thailand
- Soil Organic Matter Management Research Group, Khon Kaen University, Khon Kaen, 40002, Thailand
| | - Benjamas Rossopa
- Prachin Buri Rice Research Center, Rice Department, Ministry of Agriculture and Cooperatives, Ban Sang, Prachin Buri, 25150, Thailand
| | - Sujitra Yodda
- Program on System Approaches in Agriculture for Sustainable Development, Department of Agricultural Extension and Agricultural Systems, Faculty of Agriculture, Khon Kaen University, Khon Kaen, 40002, Thailand
| | - Tanabhat-Sakorn Sukitprapanon
- Department of Soil Science and Environment, Faculty of Agriculture, Khon Kaen University, Khon Kaen, 40002, Thailand
- Soil Organic Matter Management Research Group, Khon Kaen University, Khon Kaen, 40002, Thailand
| | - Amnat Chidthaisong
- The Joint Graduate School of Energy and Environment, King Mongkut's University of Technology Thonburi, Bangkok, 10140, Thailand
| | - Phrueksa Lawongsa
- Department of Soil Science and Environment, Faculty of Agriculture, Khon Kaen University, Khon Kaen, 40002, Thailand.
- Soil Organic Matter Management Research Group, Khon Kaen University, Khon Kaen, 40002, Thailand.
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Jiang C, Zu C, Riaz M, Li C, Zhu Q, Xia H, Dong Q, Shen J. Influences of tobacco straw return with lime on microbial community structure of tobacco-planting soil and tobacco leaf quality. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024:10.1007/s11356-024-33241-w. [PMID: 38619769 DOI: 10.1007/s11356-024-33241-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Accepted: 04/03/2024] [Indexed: 04/16/2024]
Abstract
Soil amendment is an important strategy for improving soil quality and crop yield. From 2014 to 2019, we conducted a study to investigate the effects of tobacco straw return with lime on soil nutrients, soil microbial community structure, tobacco leaf yield, and quality in southern Anhui, China. A field experiment was conducted with four treatments: straw removed (CK), straw return (St), straw return with dolomite (St + D), and straw return with lime (St + L). Results showed that after 5 years of application, the St + L significantly increased the soil pH by 16.9%, and the contents of soil alkaline nitrogen (N) and available potassium (K) by 17.2% and 23.0%, respectively, compared with the CK. Moreover, the St + L significantly increased tobacco leaf yield (24.0%) and the appearance (9.1%) and sensory (5.9%) quality of flue-cured tobacco leaves. The addition of soil conditioners (straw, dolomite, and lime) increased both the total reads and effective sequences of soil microorganisms. Bacterial diversity was more sensitive to changes in the external environment compared to soil fungi. The application of soil amendments (lime and straw) promoted the growth of beneficial microorganisms in the soil. Additionally, bacterial species had greater competition and limited availability of resources for survival compared to fungi. The results showed that soil microorganisms were significantly influenced by the presence of AK, AN, and pH contents. These findings can provide an effective method for improving the quality of flue-cured tobacco leaves and guiding the amelioration of acidic soil in regions where tobacco-rice rotation is practiced.
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Affiliation(s)
- Chaoqiang Jiang
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences (AAAS), Hefei, 230001, People's Republic of China
| | - Chaolong Zu
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences (AAAS), Hefei, 230001, People's Republic of China
| | - Muhammad Riaz
- College of Resources and Environment, Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, People's Republic of China
| | - Chen Li
- Anhui Provincial Tobacco Company, Hefei, 230000, People's Republic of China
| | - Qifa Zhu
- Anhui Wannan Leaf Tobacco Co. Ltd, Xuancheng, 242000, People's Republic of China
| | - Hao Xia
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences (AAAS), Hefei, 230001, People's Republic of China
| | - Qing Dong
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences (AAAS), Hefei, 230001, People's Republic of China
| | - Jia Shen
- Tobacco Research Institute, Anhui Academy of Agricultural Sciences (AAAS), Hefei, 230001, People's Republic of China.
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Maqbool Z, Shahbaz Farooq M, Rafiq A, Uzair M, Yousuf M, Ramzan Khan M, Huo S. Unlocking the potential of biochar in the remediation of soils contaminated with heavy metals for sustainable agriculture. FUNCTIONAL PLANT BIOLOGY : FPB 2024; 51:FP23257. [PMID: 38310926 DOI: 10.1071/fp23257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 12/20/2023] [Indexed: 02/06/2024]
Abstract
Agricultural soils contaminated with heavy metals (HMs) impose a threat to the environmental and to human health. Amendment with biochar could be an eco-friendly and cost-effective option to decrease HMs in contaminated soil. This paper reviews the application of biochar as a soil amendment to immobilise HMs in contaminated soil. We discuss the technologies of its preparation, their specific properties, and effect on the bioavailability of HMs. Biochar stabilises HMs in contaminated soil, enhance the overall quality of the contaminated soil, and significantly reduce HM uptake by plants, making it an option in soil remediation for HM contamination. Biochar enhances the physical (e.g. bulk density, soil structure, water holding capacity), chemical (e.g. cation exchange capacity, pH, nutrient availability, ion exchange, complexes), and biological properties (e.g. microbial abundance, enzymatic activities) of contaminated soil. Biochar also enhances soil fertility, improves plant growth, and reduces the plant availability of HMs. Various field studies have shown that biochar application reduces the bioavailability of HMs from contaminated soil while increasing crop yield. The review highlights the positive effects of biochar by reducing HM bioavailability in contaminated soils. Future work is recommended to ensure that biochars offer a safe and sustainable solution to remediate soils contaminated with HMs.
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Affiliation(s)
- Zubaira Maqbool
- School of Food Science and Biological Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China; and Department of Soil Science and Environmental Science, Arid Agriculture University, Rawalpindi, Pakistan
| | - Muhammad Shahbaz Farooq
- School of Food Science and Biological Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China; and Rice Research Program, Crop Sciences Institute (CSI), National Agricultural Research Centre (NARC), Park Road, Islamabad 44000, Pakistan
| | - Anum Rafiq
- Institute Soil and Water Conservation, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Muhammad Uzair
- National Institute of Genomics and Advanced Biotechnology (NIGAB), National Agriculture Research Center (NARC), Park Road, Islamabad, Pakistan
| | - Muhammad Yousuf
- Pakistan Agriculture Research Council (PARC), G5, Islamabad, Pakistan
| | - Muhammad Ramzan Khan
- National Institute of Genomics and Advanced Biotechnology (NIGAB), National Agriculture Research Center (NARC), Park Road, Islamabad, Pakistan
| | - Shuhao Huo
- School of Food Science and Biological Engineering, Jiangsu University, Zhenjiang, Jiangsu 212013, China
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Guo T, Yang Q, Qiu R, Gao J, Shi J, Lei X, Zhao Z. Efficient Degradation of Ciprofloxacin in Water over Copper-Loaded Biochar Using an Enhanced Non-Radical Pathway. Molecules 2023; 28:8094. [PMID: 38138583 PMCID: PMC10745511 DOI: 10.3390/molecules28248094] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2023] [Revised: 11/29/2023] [Accepted: 12/07/2023] [Indexed: 12/24/2023] Open
Abstract
The development of an efficient catalyst with excellent performance using agricultural biomass waste as raw materials is highly desirable for practical water pollution control. Herein, nano-sized, metal-decorated biochar was successfully synthesized with in situ chemical deposition at room temperature. The optimized BC-Cu (1:4) composite exhibited excellent peroxymonosulfate (PMS) activation performance due to the enhanced non-radical pathway. The as-prepared BC-Cu (1:4) composite displays a superior 99.99% removal rate for ciprofloxacin degradation (initial concentration 20 mg·L-1) within 40 min. In addition, BC-Cu (1:4) has superior acid-base adaptability (3.98~11.95) and anti-anion interference ability. The trapping experiments and identification of reactive oxidative radicals confirmed the crucial role of enhanced singlet oxygen for ciprofloxacin degradation via a BC-Cu (1:4)/PMS system. This work provides a new idea for developing highly active, low-cost, non-radical catalysts for efficient antibiotic removal.
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Affiliation(s)
- Ting Guo
- School of Chemistry and Environmental Science, Shaanxi University of Technology, Hanzhong 723001, China (R.Q.); (J.S.)
| | | | | | | | | | | | - Zuoping Zhao
- School of Chemistry and Environmental Science, Shaanxi University of Technology, Hanzhong 723001, China (R.Q.); (J.S.)
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Zhang T, Wei S, Liu Y, Cheng C, Ma J, Yue L, Gao Y, Cheng Y, Ren Y, Su S, Zhao X, Lu Z. Screening and genome-wide analysis of lignocellulose-degrading bacteria from humic soil. Front Microbiol 2023; 14:1167293. [PMID: 37637133 PMCID: PMC10450921 DOI: 10.3389/fmicb.2023.1167293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 07/25/2023] [Indexed: 08/29/2023] Open
Abstract
Crop straw contains huge amounts of exploitable energy, and efficient biomass degradation measures have attracted worldwide attention. Mining strains with high yields of cellulose-degrading enzymes is of great significance for developing clean energy and industrial production of related enzymes. In this study, we reported a high-quality genome sequence of Bacillus velezensis SSF6 strain using high-throughput sequencing technology (Illumina PE150 and PacBio) and assessed its lignocellulose degradation potential. The results demonstrated that the genome of B. velezensis SSF6 was 3.89 Mb and contained 4,015 genes, of which 2,972, 3,831 and 158 genes were annotated in the COGs (Clusters of Orthologous Groups), KEGG (Kyoto Encyclopedia of Genes and Genomes) and CAZyme (Carbohydrate-Active enZymes) databases, respectively, and contained a large number of genes related to carbohydrate metabolism. Furthermore, B. velezensis SSF6 has a high cellulose degradation capacity, with a filter paper assay (FPA) and an exoglucanase activity of 64.48 ± 0.28 and 78.59 ± 0.42 U/mL, respectively. Comparative genomic analysis depicted that B. velezensis SSF6 was richer in carbohydrate hydrolase gene. In conclusion, the cellulose-degrading ability of B. velezensis SSF6 was revealed by genome sequencing and the determination of cellulase activity, which laid a foundation for further cellulose degradation and bioconversion.
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Affiliation(s)
- Tianjiao Zhang
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Shuli Wei
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Yajie Liu
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Chao Cheng
- School of Life Science, Jining Normal University, Ulanqab, China
| | - Jie Ma
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Linfang Yue
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
| | - Yanrong Gao
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Yuchen Cheng
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Yongfeng Ren
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Shaofeng Su
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Xiaoqing Zhao
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
| | - Zhanyuan Lu
- School of Life Science, Inner Mongolia University, Hohhot, China
- Inner Mongolia Academy of Agriculture and Husbandry Science, Hohhot, China
- Key Laboratory of Black Soil Protection And Utilization (Hohhot), Ministry of Agriculture and Rural Affairs, Hohhot, China
- Inner Mongolia Key Laboratory of Degradation Farmland Ecological Restoration and Pollution Control, Hohhot, China
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Liu S, Yang G, Wu F, Ge Y, Liu F, Pu C, Wang Z, Shen Y, Zhou X, Luo Y, Li F, Zhang Y, Chen M, Huang L. Traditional Chinese medicine residues promote the growth and quality of Salvia miltiorrhiza Bunge by improving soil health under continuous monoculture. FRONTIERS IN PLANT SCIENCE 2023; 14:1112382. [PMID: 37351215 PMCID: PMC10284172 DOI: 10.3389/fpls.2023.1112382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/30/2022] [Accepted: 05/12/2023] [Indexed: 06/24/2023]
Abstract
Continuous monoculture of crops has resulted in reduced yields and quality, as well as soil deterioration. Although traditional Chinese medicine residues (TCMRs) are known to promote plant growth and soil health, few studies have investigated their effectiveness in continuous monoculture soils. Here, we studied the impact of chemical fertilizers (CF) and four TCMRs with antibacterial activities on the growth of S. miltiorrhiza (a widely used medicinal plant in China), accumulation of active ingredients in plants, and soil health under continuous monoculture conditions. Compared with no fertilizer (CK) and CF, fermented Sophora flavescens radix residue (SFRf) and fermented and unfermented Moutan cortex residue (MCRf and MCRu, respectively) resulted in a reduction of the disease index of root rot, while CF did not. The CF and four TCMR treatments increased the accumulation of nitrogen (N) (42.8-124.6% and 17.0-101.7%), phosphorous (P) (19.8-74.7% and 8.3-27.4%), and potassium (K) (104.1-212.0% and 9.3-51.8%) in shoots and roots compared to CK. The differences in nutrient accumulation between the CF and TCMR treatments were statistically insignificant, excepted for the N accumulation in the roots. All fertilization treatments increased plant biomass compared to CK, with increases of 25.57-89.86% and 2.62-35.28% in shoots and roots, respectively. The SFRf treatment exhibited the most significant enhancement in both shoot and root biomass. CF significantly reduced the accumulation of seven active ingredients in roots by 23.90-78.95% compared to CK, whereas each TCMR increased accumulation of certain active ingredients. The TCMR treatments effectively improved the health of deteriorated soil by enhancing soil physicochemical properties, restoring the balance of the microbial community, recruiting beneficial bacteria, and reducing the relative abundance of the pathogen Fusarium. The SFRf treatment exhibited superior performance in improving soil health than other treatments. Overall, the TCMRs outperformed CF in restoring soil health and promoting the yield and quality of S. miltiorrhiza. These findings offer guidance for improving the health of continuous cropping soil and recycling TCMRs.
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Affiliation(s)
- Sha Liu
- School of Pharmacy, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
- School of Pharmacy, Zunyi Medical University, Zunyi, Guizhou, China
| | - Guang Yang
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Faming Wu
- School of Pharmacy, Zunyi Medical University, Zunyi, Guizhou, China
| | - Yang Ge
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Fusong Liu
- School of Pharmacy, Zunyi Medical University, Zunyi, Guizhou, China
| | - Chunjuan Pu
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Zihan Wang
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Ye Shen
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Xiuteng Zhou
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Yuzhi Luo
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Fengsheng Li
- Cultivation Base Department, Laiwu Purple Light Ecological Park Co., Ltd., Jinan, Shandong, China
| | - You Zhang
- Cultivation Base Department, Laiwu Purple Light Ecological Park Co., Ltd., Jinan, Shandong, China
| | - Meilan Chen
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
| | - Luqi Huang
- State Key Laboratory of Dao-di Herbs, National Resource Center for Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing, China
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Kimeklis AK, Gladkov GV, Orlova OV, Afonin AM, Gribchenko ES, Aksenova TS, Kichko AA, Pinaev AG, Andronov EE. The Succession of the Cellulolytic Microbial Community from the Soil during Oat Straw Decomposition. Int J Mol Sci 2023; 24:ijms24076342. [PMID: 37047311 PMCID: PMC10094526 DOI: 10.3390/ijms24076342] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Revised: 03/24/2023] [Accepted: 03/27/2023] [Indexed: 03/30/2023] Open
Abstract
The process of straw decomposition is dynamic and is accompanied by the succession of the microbial decomposing community, which is driven by poorly understood interactions between microorganisms. Soil is a complex ecological niche, and the soil microbiome can serve as a source of potentially active cellulolytic microorganisms. Here, we performed an experiment on the de novo colonization of oat straw by the soil microbial community by placing nylon bags with sterilized oat straw in the pots filled with chernozem soil and incubating them for 6 months. The aim was to investigate the changes in decomposer microbiota during this process using conventional sequencing techniques. The bacterial succession during straw decomposition occurred in three phases: the early phase (first month) was characterized by high microbial activity and low diversity, the middle phase (second to third month) was characterized by low activity and low diversity, and the late phase (fourth to sixth months) was characterized by low activity and high diversity. Analysis of amplicon sequencing data revealed three groups of co-changing phylotypes corresponding to these phases. The early active phase was abundant in the cellulolytic members from Pseudomonadota, Bacteroidota, Bacillota, and Actinobacteriota for bacteria and Ascomycota for fungi, and most of the primary phylotypes were gone by the end of the phase. The second intermediate phase was marked by the set of phylotypes from the same phyla persisting in the community. In the mature community of the late phase, apart from the core phylotypes, non-cellulolytic members from Bdellovibrionota, Myxococcota, Chloroflexota, and Thermoproteota appeared. Full metagenome sequencing of the microbial community from the end of the middle phase confirmed that major bacterial and fungal members of this consortium had genes of glycoside hydrolases (GH) connected to cellulose and chitin degradation. The real-time analysis of the selection of these genes showed that their representation varied between phases, and this occurred under the influence of the host, and not the GH family factor. Our findings demonstrate that soil microbial community may act as an efficient source of cellulolytic microorganisms and that colonization of the cellulolytic substrate occurs in several phases, each characterized by its own taxonomic and functional profile.
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Affiliation(s)
- Anastasiia K. Kimeklis
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
- Department of Applied Ecology, Saint-Petersburg State University, 199034 Saint Petersburg, Russia
- Correspondence: (A.K.K.); (E.E.A.)
| | - Grigory V. Gladkov
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Olga V. Orlova
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Alexey M. Afonin
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
- A.I. Virtanen Institute for Molecular Sciences, University of Eastern Finland, FI-70211 Kuopio, Finland
| | - Emma S. Gribchenko
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Tatiana S. Aksenova
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Arina A. Kichko
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Alexander G. Pinaev
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
| | - Evgeny E. Andronov
- All-Russian Research Institute of Agricultural Microbiology, 196608 Saint Petersburg, Russia
- Dokuchaev Soil Science Institute, 119017 Moscow, Russia
- Correspondence: (A.K.K.); (E.E.A.)
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Liu Y, Tan Y, Liang D, Pei C, Zhang Z. Effects of Sugarcane Leaf Return and Fertilizer Reduction on Maize Growth, Yield and Soil Properties in Red Soil. PLANTS (BASEL, SWITZERLAND) 2023; 12:1029. [PMID: 36903890 PMCID: PMC10004792 DOI: 10.3390/plants12051029] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/13/2023] [Revised: 02/17/2023] [Accepted: 02/21/2023] [Indexed: 06/18/2023]
Abstract
In order to make better use of the vast sugarcane leaf straw resources and reduce the overuse of chemical fertilizers in the subtropical red soil region of Guangxi, this study aimed to determine the effects of sugarcane leaf return (SLR) and fertilizer reduction (FR) on maize growth, yield component and yield, and soil properties. A pot experiment with three SLR amounts (full SLR (FS), 120 g/pot; half SLR (HS), 60 g/pot; and no SLR (NS) with three FR levels including full fertilizer (FF), 4.50 g N/pot, 3.00 g P2O5/pot, and 4.50 g K2O/pot; half fertilizer (HF), 2.25 g N/pot, 1.50 g P2O5/pot, and 2.25 g K2O/pot; and no fertilizer (NF)), without nitrogen, phosphorous, and potassium added, was conducted to assess the effects of different SLR amounts and chemical FR levels on maize growth, yield, and soil properties. Compared with no sugarcane leaf return and the no-fertilizer treatment (CK), SLR and FR could increase maize plant height, stalk diameter, number of fully developed maize plant leaves, total leaf area and chlorophyll content, soil alkali-hydrolyzable nitrogen (AN), available phosphorus (AP), available potassium (AK), soil organic matter (SOM), and electrical conductivity (EC). The maize yield component factors of FS and HS were higher in NF treatment than those in NS treatment. The relative increase rate of treatments retained FF/NF and HF/NF under FS or HS condition on 1000 kernel weight, ear diameter, plant air-dried weight, ear height, and yield than that under NS condition. FSHF had not only the largest plant air-dried weight but also the highest maize yield (3225.08 kg/hm2) among nine treatment combinations. The effects of SLR on maize growth and yield and soil properties were lower than those of FR. SLR and FR combined treatment did not affect maize growth but affected maize yield significantly. Soil properties improved more with SLR + FR treatment than with SLR or FR application alone. The plant height, stalk diameter, number of fully developed maize plant leaves, and total leaf area, as well as AN, AP, AK, SOM, and EC levels in soil, were enhanced by SLR and FR incorporation. The experimental results indicated that applying reasonable FR combined with SLR increased AN, AP, AK, SOM, and EC, which improved maize growth and yield and enhanced soil properties in red soil. Hence, FSHF might be a suitable combination of SLR and FR.
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Affiliation(s)
- Yufeng Liu
- Agricultural Resources and Environmental Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Arable Land Conservation, Nanning 530007, China
| | - Yumo Tan
- Agricultural Resources and Environmental Research Institute, Guangxi Academy of Agricultural Sciences/Guangxi Key Laboratory of Arable Land Conservation, Nanning 530007, China
| | - Dan Liang
- Guangxi Vocational College of Water Resources and Electric Power, Nanning 530023, China
| | - Chengruo Pei
- Guangxi Vocational College of Water Resources and Electric Power, Nanning 530023, China
| | - Zhenhua Zhang
- Institute of Jiangsu Coastal Agricultural Sciences, Yancheng 224002, China
- School of Agriculture and Environment, The University of Western Australia, Crawley, WA 6009, Australia
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Sun R, Wang X, Alhaj Hamoud Y, Lu M, Shaghaleh H, Zhang W, Zhang C, Ma C. Dynamic variation of bacterial community assemblage and functional profiles during rice straw degradation. Front Microbiol 2023; 14:1173442. [PMID: 37125169 PMCID: PMC10140369 DOI: 10.3389/fmicb.2023.1173442] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2023] [Accepted: 03/23/2023] [Indexed: 05/02/2023] Open
Abstract
Bacteria is one of the most important drivers of straw degradation. However, the changes in bacterial community assemblage and straw-decomposing profiles during straw decomposition are not well understood. Based on cultivation-dependent and independent technologies, this study revealed that the "common species" greatly contributed to the dynamic variation of bacterial community during straw decomposition. Twenty-three functional strains involved in straw decomposition were isolated, but only seven were detected in the high-throughput sequencing data. The straw decomposers, including the isolated strains and the agents determined by functional prediction, constituted only 0.024% (on average) of the total bacterial community. The ecological network showed that most of the identified decomposers were self-existent without associations with other species. These results showed that during straw composition, community assembly might be greatly determined by the majority, but straw decomposition functions might be largely determined by the minority and emphasized the importance of the rare species in community-specific functions.
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Affiliation(s)
- Ruibo Sun
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Xin Wang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | | | - Mengxing Lu
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Hiba Shaghaleh
- College of Environment, Hohai University, Nanjing, China
| | - Wenjie Zhang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
| | - Chaochun Zhang
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
- College of Resources and Environmental Sciences, National Academy of Agriculture Green Development, Key Laboratory of Plant-Soil Interactions, Ministry of Education, College of Resources and Environmental Sciences, China Agricultural University, Beijing, China
- *Correspondence: Chaochun Zhang, ; Chao Ma,
| | - Chao Ma
- Anhui Province Key Laboratory of Farmland Ecological Conservation and Pollution Prevention, Research Centre of Phosphorus Efficient Utilization and Water Environment Protection Along the Yangtze River Economic Belt, College of Resources and Environment, Anhui Agricultural University, Hefei, China
- Key Laboratory of JiangHuai Arable Land Resources Protection and Eco-restoration, Ministry of Natural Resources, Hefei, China
- *Correspondence: Chaochun Zhang, ; Chao Ma,
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