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Lu Z, Wang X, Lin X, Mostafa S, Bao H, Ren S, Cui J, Jin B. Genome-Wide Identification and Characterization of Long Non-Coding RNAs Associated with Floral Scent Formation in Jasmine ( Jasminum sambac). Biomolecules 2023; 14:45. [PMID: 38254645 PMCID: PMC10812929 DOI: 10.3390/biom14010045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Revised: 12/19/2023] [Accepted: 12/26/2023] [Indexed: 01/24/2024] Open
Abstract
Long non-coding RNAs (lncRNAs) have emerged as curial regulators of diverse biological processes in plants. Jasmine (Jasminum sambac) is a world-renowned ornamental plant for its attractive and exceptional flower fragrance. However, to date, no systematic screening of lncRNAs and their regulatory roles in the production of the floral fragrance of jasmine flowers has been reported. In this study, we identified a total of 31,079 novel lncRNAs based on an analysis of strand-specific RNA-Seq data from J. sambac flowers at different stages. The lncRNAs identified in jasmine flowers exhibited distinct characteristics compared with protein-coding genes (PCGs), including lower expression levels, shorter transcript lengths, and fewer exons. Certain jasmine lncRNAs possess detectable sequence conservation with other species. Expression analysis identified 2752 differentially expressed lncRNAs (DE_lncRNAs) and 8002 DE_PCGs in flowers at the full-blooming stage. DE_lncRNAs could potentially cis- and trans-regulate PCGs, among which DE_lincRNAs and their targets showed significant opposite expression patterns. The flowers at the full-blooming stage are specifically enriched with abundant phenylpropanoids and terpenoids potentially contributed by DE_lncRNA cis-regulated PCGs. Notably, we found that many cis-regulated DE_lncRNAs may be involved in terpenoid and phenylpropanoid/benzenoid biosynthesis pathways, which potentially contribute to the production of jasmine floral scents. Our study reports numerous jasmine lncRNAs and identifies floral-scent-biosynthesis-related lncRNAs, which highlights their potential functions in regulating the floral scent formation of jasmine and lays the foundations for future molecular breeding.
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Affiliation(s)
- Zhaogeng Lu
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Xinwen Wang
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Xinyi Lin
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Salma Mostafa
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
- College of Bioscience and Biotechnology, Yangzhou University, Yangzhou 225009, China
| | - Hongyan Bao
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Shixiong Ren
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Jiawen Cui
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
| | - Biao Jin
- College of Horticulture and Landscape Architecture, Yangzhou University, Yangzhou 225009, China; (Z.L.)
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Dötterl S, Gershenzon J. Chemistry, biosynthesis and biology of floral volatiles: roles in pollination and other functions. Nat Prod Rep 2023; 40:1901-1937. [PMID: 37661854 DOI: 10.1039/d3np00024a] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
Covering: 2010 to 2023Floral volatiles are a chemically diverse group of plant metabolites that serve multiple functions. Their composition is shaped by environmental, ecological and evolutionary factors. This review will summarize recent advances in floral scent research from chemical, molecular and ecological perspectives. It will focus on the major chemical classes of floral volatiles, on notable new structures, and on recent discoveries regarding the biosynthesis and the regulation of volatile emission. Special attention will be devoted to the various functions of floral volatiles, not only as attractants for different types of pollinators, but also as defenses of flowers against enemies. We will also summarize recent findings on how floral volatiles are affected by abiotic stressors, such as increased temperatures and drought, and by other organisms, such as herbivores and flower-dwelling microbes. Finally, this review will indicate current research gaps, such as the very limited knowledge of the isomeric pattern of chiral compounds and its importance in interspecific interactions.
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Affiliation(s)
- Stefan Dötterl
- Department of Environment & Biodiversity, Paris Lodron University Salzburg, Hellbrunnerstr 34, 5020 Salzburg, Austria.
| | - Jonathan Gershenzon
- Department of Biochemistry, Max Planck Institute for Chemical Ecology, Hans-Knöll-Straße 8, 07745 Jena, Germany.
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Ding C, Zhang Z. Effective omics tools are still lacking for improvement of stress tolerance in polyploid crops. FRONTIERS IN PLANT SCIENCE 2023; 14:1295528. [PMID: 38023865 PMCID: PMC10646182 DOI: 10.3389/fpls.2023.1295528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Accepted: 10/18/2023] [Indexed: 12/01/2023]
Affiliation(s)
- Chao Ding
- Shanxi Center for Testing of Functional Agro-Products, Shanxi Agricultural University, Taiyuan, China
| | - Zhao Zhang
- Beijing Key Laboratory of Development and Quality Control of Ornamental Crops, Department of Ornamental Horticulture, China Agricultural University, Beijing, China
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Xie L, Bai X, Zhang H, Qiu X, Jian H, Wang Q, Wang H, Feng D, Tang K, Yan H. Loss of Rose Fragrance under Chilling Stress Is Associated with Changes in DNA Methylation and Volatile Biosynthesis. Genes (Basel) 2023; 14:genes14030692. [PMID: 36980964 PMCID: PMC10048243 DOI: 10.3390/genes14030692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/08/2023] [Accepted: 03/08/2023] [Indexed: 03/14/2023] Open
Abstract
Rose plants are widely cultivated as cut flowers worldwide and have economic value as sources of natural fragrance and flavoring. Rosa ‘Crimson Glory’, whose petals have a pleasant fragrance, is one of the most important cultivars of edible rose plants. Flower storage at low-temperature is widely applied in production to maintain quality; however, chilling results in a decrease in aromatic volatiles. To determine the molecular basis underlying the changes in aromatic volatile emissions, we investigated the changes in volatile compounds, DNA methylation patterns, and patterns of the transcriptome in response to chilling temperature. The results demonstrated that chilling roses substantially reduced aromatic volatile emissions. We found that these reductions were correlated with the changes in the methylation status of the promoters and genic regions of the genes involved in volatile biosynthesis. These changes mainly occurred for CHH (H = A, T, or C) which accounted for 51% of the total methylation. Furthermore, transcript levels of scent-related gene Germacrene D synthase (RhGDS), Nudix hydrolase 1 (RhNUDX1), and Phenylacetaldehyde reductase (RhPAR) of roses were strikingly depressed after 24 h at low-temperature and remained low-level after 24 h of recovery at 20 °C. Overall, our findings indicated that epigenetic regulation plays an important role in the chilling tolerance of roses and lays a foundation for practical significance in the production of edible roses.
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Affiliation(s)
- Limei Xie
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
- Institute of Resource Plants, Yunnan University, Kunming 650000, China
| | - Xue Bai
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
- Institute of Resource Plants, Yunnan University, Kunming 650000, China
| | - Hao Zhang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Xianqin Qiu
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Hongying Jian
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Qigang Wang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Huichun Wang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Dedang Feng
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
| | - Kaixue Tang
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
- Correspondence: (K.T.); (H.Y.)
| | - Huijun Yan
- Flower Research Institute of Yunnan Academy of Agricultural Sciences, Kunming 650205, China
- National Engineering Research Center for Ornamental Horticulture, Kunming 650000, China
- Correspondence: (K.T.); (H.Y.)
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