The "Regulator" Function of Viruses on Ecosystem Carbon Cycling in the Anthropocene

Review of Methods for Studying Viruses in the Environment and Organisms

Recent decades have seen growing attention on viruses in the environment and their potential impacts as a result of global epidemics. Due to the diversity of viral species along with the complexity of environmental and host factors, virus extraction and detection methods have become key for the study of virus ecology. This review systematically summarises the methods for extracting and detecting pathogens from different environmental samples (e.g., soil, water, faeces, air) and biological samples (e.g., plants, animals) in existing studies, comparing their similarities and differences, applicability, as well as the advantages and disadvantages of each method. Additionally, this review discusses future directions for research in this field. The aim is to provide a theoretical foundation and technical reference for virus ecology research, facilitating further exploration and applications in this field.

Virus-to-prokaryote ratio in the Salar de Huasco and different ecosystems of the Southern hemisphere and its relationship with physicochemical and biological parameters

The virus-to-prokaryote ratio (VPR) has been used in many ecosystems to study the relationship between viruses and their hosts. While high VPR values indicate a high rate of prokaryotes' cell lysis, low values are interpreted as a decrease in or absence of viral activity. Salar de Huasco is a high-altitude wetland characterized by a rich microbial diversity associated with aquatic sites like springs, ponds, streams and a lagoon with variable physicochemical conditions. Samples from two ponds, Poza Rosada (PR) and Poza Verde (PV), were analyzed by epifluorescence microscopy to determine variability of viral and prokaryotic abundance and to calculate the VPR in a dry season. In addition, to put Salar de Huasco results into perspective, a compilation of research articles on viral and prokaryotic abundance, VPR, and metadata from various Southern hemisphere ecosystems was revised. The ecosystems were grouped into six categories: high-altitude wetlands, Pacific, Atlantic, Indian, and Southern Oceans and Antarctic lakes. Salar de Huasco ponds recorded similar VPR values (an average of 7.4 and 1.7 at PR and PV, respectively), ranging from 3.22 to 15.99 in PR. The VPR variability was associated with VA and chlorophyll a, when considering all data available for this ecosystem. In general, high-altitude wetlands recorded the highest VPR average (53.22 ± 95.09), followed by the Oceans, Southern (21.91 ± 25.72), Atlantic (19.57 ± 15.77) and Indian (13.43 ± 16.12), then Antarctic lakes (11.37 ± 15.82) and the Pacific Ocean (6.34 ± 3.79). Physicochemical variables, i.e., temperature, conductivity, nutrients (nitrate, ammonium, and phosphate) and chlorophyll a as a biological variable, were found to drive the VPR in the ecosystems analyzed. Thus, the viral activity in the Wetland followed similar trends of previous reports based on larger sets of metadata analyses. In total, this study highlights the importance of including viruses as a biological variable to study microbial temporal dynamics in wetlands considering their crucial role in the carbon budgets of these understudied ecosystems in the southern hemisphere.

Phytoplankton community composition, carbon sequestration, and associated regulatory mechanisms in a floodplain lake system

Phytoplankton contribute approximately 50% to the global photosynthetic carbon (C) fixation. However, our understanding of the corresponding C sequestration capacity and driving mechanisms associated with each individual phytoplankton taxonomic group is limited. Particularly in the hydrologically dynamic system with highly complex surface hydrological processes (floodplain lake systems). Through investigating seasonal monitoring data in a typical floodplain lake system and estimation of primary productivity of each phytoplankton taxonomic group individually using novel equations, this study proposed a phytoplankton C fixation model. Results showed that dominant phytoplankton communities had a higher gross carbon sequestration potential (CSP) (9.50 ± 5.06 Gg C each stage) and gross primary productivity (GPP) (65.46 ± 25.32 mg C m^-2 d^-1), but a lower net CSP (-1.04 ± 0.79 Gg C each stage) and net primary productivity (NPP) (-5.62 ± 4.93 mg C m^-3 d^-1) than rare phytoplankton communities in a floodplain lake system. Phytoplanktonic GPP was high (317.94 ± 73.28 mg C m^-2 d^-1) during the rainy season and low (63.02 ± 9.65 mg C m^-2 d^-1) during the dry season. However, their NPP reached the highest during the rising-water stage and the lowest during the receding-water stage. Findings also revealed that during the rainy season, high water levels (p = 0.56**) and temperatures (p = 0.37*) as well as strong solar radiation (p = 0.36*) will increase photosynthesis and accelerate metabolism and respiration of dominant phytoplankton communities, then affect primary productivity and CSP. Additionally, water level fluctuations drive changes in nutrients (p = -0.57*) and metals (p = -0.68*) concentrations, resulting in excessive nutrients and metals slowing down phytoplankton growth and reducing GPP. Compared with the static water lake system, the floodplain lake system with a lower net CSP became a heterotrophic C source.