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Bisht A, Saini DK, Kaur B, Batra R, Kaur S, Kaur I, Jindal S, Malik P, Sandhu PK, Kaur A, Gill BS, Wani SH, Kaur B, Mir RR, Sandhu KS, Siddique KHM. Multi-omics assisted breeding for biotic stress resistance in soybean. Mol Biol Rep 2023; 50:3787-3814. [PMID: 36692674 DOI: 10.1007/s11033-023-08260-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 01/09/2023] [Indexed: 01/25/2023]
Abstract
Biotic stress is a critical factor limiting soybean growth and development. Soybean responses to biotic stresses such as insects, nematodes, fungal, bacterial, and viral pathogens are governed by complex regulatory and defense mechanisms. Next-generation sequencing has availed research techniques and strategies in genomics and post-genomics. This review summarizes the available information on marker resources, quantitative trait loci, and marker-trait associations involved in regulating biotic stress responses in soybean. We discuss the differential expression of related genes and proteins reported in different transcriptomics and proteomics studies and the role of signaling pathways and metabolites reported in metabolomic studies. Recent advances in omics technologies offer opportunities to reshape and improve biotic stress resistance in soybean by altering gene regulation and/or other regulatory networks. We suggest using 'integrated omics' to precisely understand how soybean responds to different biotic stresses. We also discuss the potential challenges of integrating multi-omics for the functional analysis of genes and their regulatory networks and the development of biotic stress-resistant cultivars. This review will help direct soybean breeding programs to develop resistance against different biotic stresses.
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Affiliation(s)
- Ashita Bisht
- Department of Plant Breeding and Genetics, Punjab Agricultural University, 141004, Ludhiana, India
- CSK Himachal Pradesh Krishi Vishvavidyalaya, Highland Agricultural Research and Extension Centre, 175142, Kukumseri, Lahaul and Spiti, India
| | - Dinesh Kumar Saini
- Department of Plant Breeding and Genetics, Punjab Agricultural University, 141004, Ludhiana, India.
| | - Baljeet Kaur
- Department of Plant Breeding and Genetics, Punjab Agricultural University, 141004, Ludhiana, India
| | - Ritu Batra
- Department of Genetics and Plant Breeding, Chaudhary Charan Singh University, 25004, Meerut, India
| | - Sandeep Kaur
- Department of Plant Breeding and Genetics, Punjab Agricultural University, 141004, Ludhiana, India
| | - Ishveen Kaur
- Agriculture, Environmental and Sustainability Sciences, College of sciences, University of Texas Rio Grande Valley, 78539, Edinburg, TX, USA
| | - Suruchi Jindal
- Division of Molecular Biology and Genetic Engineering, School of Bioengineering and Biosciences, Lovely Professional University, Phagwara, India
| | - Palvi Malik
- , Gurdev Singh Khush Institute of Genetics, Plant Breeding and Biotechnology, Punjab Agricultural University,, 141004, Ludhiana, India
| | - Pawanjit Kaur Sandhu
- Department of Chemistry, University of British Columbia, V1V 1V7, Okanagan, Kelowna, Canada
| | - Amandeep Kaur
- Division of Molecular Biology and Genetic Engineering, School of Bioengineering and Biosciences, Lovely Professional University, Phagwara, India
| | - Balwinder Singh Gill
- Department of Plant Breeding and Genetics, Punjab Agricultural University, 141004, Ludhiana, India
| | - Shabir Hussain Wani
- MRCFC Khudwani, Sher-e-Kashmir University of Agricultural Sciences and Technology, Kashmir, Shalimar, India
| | - Balwinder Kaur
- Department of Entomology, UF/IFAS Research and Education Center, 33430, Belle Glade, Florida, USA
| | - Reyazul Rouf Mir
- Division of Genetics and Plant Breeding, Faculty of Agriculture, SKUAST-Kashmir, 193201, India
| | - Karansher Singh Sandhu
- Department of Crop and Soil Sciences, Washington State University, 99163, Pullman, WA, USA.
| | - Kadambot H M Siddique
- The UWA Institute of Agriculture, The University of Western Australia, 6001, Perth, WA, Australia.
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