1
|
Reissig GN, de Carvalho Oliveira TF, Parise AG, Costa ÁVL, Posso DA, Rombaldi CV, Souza GM. Approximate entropy: a promising tool to understand the hidden electrical activity of fruit. Commun Integr Biol 2023; 16:2195236. [PMID: 37007213 PMCID: PMC10054301 DOI: 10.1080/19420889.2023.2195236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/29/2023] Open
Abstract
Fruits, like other parts of the plant, appear to have a rich electrical activity that may contain information. Here, we present data showing differences in the electrome complexity of tomato fruits through ripening and discuss possible physiological processes involved. The complexity of the signals, measured through approximate entropy, varied along the fruit ripening process. When analyzing the fruits individually, a decrease in entropy values was observed when they entered the breaker stage, followed by a tendency to increase again when they entered the light red stage. Consequently, the data obtained showed a decrease in signal complexity in the breaker stage, probably due to some physiological process that ends up predominating to the detriment of others. This result may be linked to processes involved in ripening, such as climacteric. Electrophysiological studies in the reproductive stage of the plant are still scarce, and research in this direction is of paramount importance to understand whether the electrical signals observed can transmit information from reproductive structures to other modules of plants. This work opens the possibility of studying the relationship between the electrical activity and fruit ripening through the analysis of approximate entropy. More studies are necessary to understand whether there is a correlation or a cause-response relationship in the phenomena involved. There is a myriad of possibilities for the applicability of this knowledge to different areas, from understanding the cognitive processes of plants to achieving more accurate and sustainable agriculture.
Collapse
|
2
|
Buss E, Aust T, Wahby M, Rabbel TL, Kernbach S, Hamann H. Stimulus classification with electrical potential and impedance of living plants: comparing discriminant analysis and deep-learning methods. BIOINSPIRATION & BIOMIMETICS 2023; 18:025003. [PMID: 36758242 DOI: 10.1088/1748-3190/acbad2] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Accepted: 02/09/2023] [Indexed: 06/18/2023]
Abstract
The physiology of living organisms, such as living plants, is complex and particularly difficult to understand on a macroscopic, organism-holistic level. Among the many options for studying plant physiology, electrical potential and tissue impedance are arguably simple measurement techniques that can be used to gather plant-level information. Despite the many possible uses, our research is exclusively driven by the idea of phytosensing, that is, interpreting living plants' signals to gather information about surrounding environmental conditions. As ready-to-use plant-level physiological models are not available, we consider the plant as a blackbox and apply statistics and machine learning to automatically interpret measured signals. In simple plant experiments, we exposeZamioculcas zamiifoliaandSolanum lycopersicum(tomato) to four different stimuli: wind, heat, red light and blue light. We measure electrical potential and tissue impedance signals. Given these signals, we evaluate a large variety of methods from statistical discriminant analysis and from deep learning, for the classification problem of determining the stimulus to which the plant was exposed. We identify a set of methods that successfully classify stimuli with good accuracy, without a clear winner. The statistical approach is competitive, partially depending on data availability for the machine learning approach. Our extensive results show the feasibility of the blackbox approach and can be used in future research to select appropriate classifier techniques for a given use case. In our own future research, we will exploit these methods to derive a phytosensing approach to monitoring air pollution in urban areas.
Collapse
Affiliation(s)
- Eduard Buss
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
| | - Till Aust
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
| | - Mostafa Wahby
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
| | - Tim-Lucas Rabbel
- Institute of Computer Engineering, University of Lübeck, Lübeck, Germany
| | - Serge Kernbach
- CYBRES GmbH, Research Center of Advanced Robotics and Environmental Science, Stuttgart, Germany
| | - Heiko Hamann
- Department of Computer and Information Science, University of Konstanz, Konstanz, Germany
| |
Collapse
|
3
|
Costa ÁVL, Oliveira TFDC, Posso DA, Reissig GN, Parise AG, Barros WS, Souza GM. Systemic Signals Induced by Single and Combined Abiotic Stimuli in Common Bean Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:924. [PMID: 36840271 PMCID: PMC9964927 DOI: 10.3390/plants12040924] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 01/10/2023] [Accepted: 02/10/2023] [Indexed: 06/18/2023]
Abstract
To survive in a dynamic environment growing fixed to the ground, plants have developed mechanisms for monitoring and perceiving the environment. When a stimulus is perceived, a series of signals are induced and can propagate away from the stimulated site. Three distinct types of systemic signaling exist, i.e., (i) electrical, (ii) hydraulic, and (iii) chemical, which differ not only in their nature but also in their propagation speed. Naturally, plants suffer influences from two or more stimuli (biotic and/or abiotic). Stimuli combination can promote the activation of new signaling mechanisms that are explicitly activated, as well as the emergence of a new response. This study evaluated the behavior of electrical (electrome) and hydraulic signals after applying simple and combined stimuli in common bean plants. We used simple and mixed stimuli applications to identify biochemical responses and extract information from the electrical and hydraulic patterns. Time series analysis, comparing the conditions before and after the stimuli and the oxidative responses at local and systemic levels, detected changes in electrome and hydraulic signal profiles. Changes in electrome are different between types of stimulation, including their combination, and systemic changes in hydraulic and oxidative dynamics accompany these electrical signals.
Collapse
Affiliation(s)
- Ádrya Vanessa Lira Costa
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| | - Thiago Francisco de Carvalho Oliveira
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| | - Douglas Antônio Posso
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| | - Gabriela Niemeyer Reissig
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| | | | - Willian Silva Barros
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| | - Gustavo Maia Souza
- Laboratory of Plant Cognition and Electrophysiology, Department of Botany, Institute of Biology, Federal University of Pelotas, Capão do Leão CEP 96160-000, Rio Grande do Sul, Brazil
| |
Collapse
|
4
|
Sai K, Sood N, Saini I. Classification of various nutrient deficiencies in tomato plants through electrophysiological signal decomposition and sample space reduction. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 186:266-278. [PMID: 35932651 DOI: 10.1016/j.plaphy.2022.07.022] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 07/13/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
Abstract
Plants leave testimonies of undergoing physical state by depicting distinct variations in their electrophysiological data. Adequate nutrition of plants signifies their role in the growth and a plentiful harvest. Plant signal data carries enough information to detect and analyse nutrient deficiency. Classification of nutrient deficiencies through signal decomposition and bilevel measurements has not been reported earlier. The proposed work explores tomato plants in four-time cycles (Early Morning, Morning, After Noon, Night) of macronutrients Calcium (Ca), Nitrogen (N) and micronutrients Manganese (Mn), Iron (Fe). Using the Empirical Mode Decomposition method (EMD), signals are decomposed into Intrinsic Mode Functions (IMF) in 10-levels. Further, Intrinsic mode functions are grouped into two clusters to extract descriptive data statistics and bi-level measurements. Then a novel sample selection method is proposed to achieve a better classification rate by reducing sample space. A binary classification model is built to train and test 15 features individually using discriminant analysis and naïve-Bayes classifier variants. The reported results achieved a classification rate up to 98% after 5-fold cross-validation. Attained findings endorse novel pathways for detection and classification of nutrient deficiencies in the early stages, consequently promoting prevention and treatment approaches earliest to the appearance of symptoms, also helping to enhance plant growth.
Collapse
Affiliation(s)
- Kavya Sai
- Department of Electronics and Communication, Dr B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| | - Neetu Sood
- Department of Electronics and Communication, Dr B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| | - Indu Saini
- Department of Electronics and Communication, Dr B R Ambedkar National Institute of Technology, Jalandhar, Punjab, 144011, India.
| |
Collapse
|
5
|
Parise AG, de Toledo GRA, Oliveira TFDC, Souza GM, Castiello U, Gagliano M, Marder M. Do plants pay attention? A possible phenomenological-empirical approach. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2022; 173:11-23. [PMID: 35636584 DOI: 10.1016/j.pbiomolbio.2022.05.008] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/08/2022] [Revised: 05/17/2022] [Accepted: 05/25/2022] [Indexed: 06/15/2023]
Abstract
Attention is the important ability of flexibly controlling limited cognitive resources. It ensures that organisms engage with the activities and stimuli that are relevant to their survival. Despite the cognitive capabilities of plants and their complex behavioural repertoire, the study of attention in plants has been largely neglected. In this article, we advance the hypothesis that plants are endowed with the ability of attaining attentive states. We depart from a transdisciplinary basis of philosophy, psychology, physics and plant ecophysiology to propose a framework that seeks to explain how plant attention might operate and how it could be studied empirically. In particular, the phenomenological approach seems particularly important to explain plant attention theoretically, and plant electrophysiology seems particularly suited to study it empirically. We propose the use of electrophysiological techniques as a viable way for studying it, and we revisit previous work to support our hypothesis. We conclude this essay with some remarks on future directions for the study of plant attention and its implications to botany.
Collapse
Affiliation(s)
- André Geremia Parise
- Laboratory of Plant Cognition and Electrophysiology (LACEV), Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil.
| | - Gabriel Ricardo Aguilera de Toledo
- Laboratory of Plant Cognition and Electrophysiology (LACEV), Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Thiago Francisco de Carvalho Oliveira
- Laboratory of Plant Cognition and Electrophysiology (LACEV), Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Gustavo Maia Souza
- Laboratory of Plant Cognition and Electrophysiology (LACEV), Department of Botany, Institute of Biology, Federal University of Pelotas, Pelotas, RS, Brazil
| | - Umberto Castiello
- Neuroscience of Movement Laboratory (NEMO), Department of General Psychology, University of Padova, Padova, Italy
| | - Monica Gagliano
- Biological Intelligence Laboratory (BI Lab), School of Environment, Science and Engineering, Southern Cross University, Lismore, NSW, Australia
| | - Michael Marder
- Ikerbasque: Basque Foundation for Science & Department of Philosophy, University of the Basque Country (UPV/EHU), Spain
| |
Collapse
|