Polarization by the effect of a small torsional change in the benzothiazole (A)-benzobisthiazole (B) oligomer A-B13-A

Valence topological charge-transfer indices for reflecting polarity: correction for heteromolecules

Valence topological charge-transfer (CT) indices are applied to the calculation of dipole moments μ. The μ calculated by algebraic and vector semisums of the CT indices are defined. The model is generalized for molecules with heteroatoms and corrected for sp³-heteromolecules. The ability of the indices for the description of the molecular charge distribution is established by comparing them with μ of the valence-isoelectronic series of cyclopentadiene, benzene and styrene. Two CT indices, μ_vec (vector semisum of vertex-pair μ) and μ_vec^V (valence μ_vec) are proposed. The μ_vec^V behaviour is intermediate between μ_vec and μ_experiment. The correction is produced in the correct direction. The best results are obtained for the greatest group. Inclusion of the heteroatom in the π-electron system is beneficial for the description of μ, owing to either the role of additional p and/or d orbitals provided by the heteroatom or the role of steric factors in the π-electron conjugation. The steric effect is almost constant along the series and the dominating effect is electronic. Inclusion of the heteroatom enhances μ, which can improve the solubility of the molecule. For heteroatoms in the same group, the ring size and the degree of ring flattering are inversely proportional to their electronegativity.

Calculation of partition coefficient and hydrophobic moment of the secondary structure of lysozyme

A method that permits a semiquantitative estimate of the partitioning of any solute between any two media is presented. As an example, the partition coefficients and hydrophobic moment of the secondary structure of lysozyme are calculated. Program GSCAP is written as a version of Pascal's solvent-dependent conformational analysis (SCAP) program. The dipole moments calculated for the helices are trebled with respect to that for the sheet. For helices, the main contribution to the water-accessible surface area is the hydrophobic term, while the hydrophilic part dominates in the sheet. Molecular globularity and the three studied partition coefficients differentiate between helices and sheet.