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Kosgei GK, Fernando PUAI. Recent Advances in Fluorescent Based Chemical Probes for the Detection of Perchlorate Ions. Crit Rev Anal Chem 2025:1-25. [PMID: 39783983 DOI: 10.1080/10408347.2024.2447299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2025]
Abstract
This review highlights recent advancements and challenges in fluorescence-based chemical sensors for selective and sensitive detection of perchlorate, a persistent environmental pollutant and global concern due to its health and safety implications. Perchlorate is a highly persistent inorganic pollutant found in drinking water, soil, and air, with known endocrine-disruptive properties due to its interference with iodide uptake by the thyroid gland. Human exposure mainly occurs through contaminated water and food. Additionally, perchlorates are prevalent in improvised explosives, causing numerous civilian casualties, making their detection important in a worldwide aspect. Fluorescence-based chemical sensors provide a valuable tool for the selective detection of perchlorate ions due to their simplicity and applicability across various fields, including biology, pharmacology, military, and environmental science. This review article overviews perchlorate chemistry, occurrence, and remediation strategies, compares regulatory limits, and examines fluorescence-based detection mechanisms. It systematically summarizes recent advancements in designing at least a dozen fluorescence-based chemical materials for detecting perchlorate in the environment over the past decade. Key focus areas include the design and molecular architecture of synthetic chemical chromophores for perchlorate sensing and the photochemistry mechanisms driving their effectiveness. The main findings indicate that there has been significant progress in the development of reliable and robust fluorescence-based sensors with higher selectivity and sensitivity for perchlorate detection. However, several challenges remain, such as improving detection limits and sensor stability. The review outlines potential future research directions, emphasizing the need for further innovation in sensor design and development. It aims to enhance understanding and spur advances that could create more efficient and robust chemical scaffolds for perchlorate sensing. By addressing current limitations and identifying opportunities for improvement, the review provides a comprehensive resource for researchers working to develop better detection methods for this significant environmental pollutant.
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Affiliation(s)
- Gilbert K Kosgei
- U.S. Army Engineer Research and Development Center, Environmental Laboratory, Vicksburg, Mississippi, USA
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Liu Y, Ping M, Han J, Cheng X, Qin H, Wang W. Neural Network Methods in the Development of MEMS Sensors. MICROMACHINES 2024; 15:1368. [PMID: 39597178 PMCID: PMC11596212 DOI: 10.3390/mi15111368] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Revised: 11/06/2024] [Accepted: 11/11/2024] [Indexed: 11/29/2024]
Abstract
As a kind of long-term favorable device, the microelectromechanical system (MEMS) sensor has become a powerful dominator in the detection applications of commercial and industrial areas. There have been a series of mature solutions to address the possible issues in device design, optimization, fabrication, and output processing. The recent involvement of neural networks (NNs) has provided a new paradigm for the development of MEMS sensors and greatly accelerated the research cycle of high-performance devices. In this paper, we present an overview of the progress, applications, and prospects of NN methods in the development of MEMS sensors. The superiority of leveraging NN methods in structural design, device fabrication, and output compensation/calibration is reviewed and discussed to illustrate how NNs have reformed the development of MEMS sensors. Relevant issues in the usage of NNs, such as available models, dataset construction, and parameter optimization, are presented. Many application scenarios have demonstrated that NN methods can enhance the speed of predicting device performance, rapidly generate device-on-demand solutions, and establish more accurate calibration and compensation models. Along with the improvement in research efficiency, there are also several critical challenges that need further exploration in this area.
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Affiliation(s)
- Yan Liu
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
| | - Mingda Ping
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
| | - Jizhou Han
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
| | - Xiang Cheng
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
| | - Hongbo Qin
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
| | - Weidong Wang
- School of Mechano-Electronic Engineering, Xidian University, Xi’an 710071, China; (M.P.); (J.H.); (X.C.); (H.Q.)
- CityU-Xidian Joint Laboratory of Micro/Nano Manufacturing, Shenzhen 518057, China
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Ferguson C, Zhang Y, Palego C, Cheng X. Recent Approaches to Design and Analysis of Electrical Impedance Systems for Single Cells Using Machine Learning. SENSORS (BASEL, SWITZERLAND) 2023; 23:5990. [PMID: 37447838 DOI: 10.3390/s23135990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/12/2023] [Revised: 06/17/2023] [Accepted: 06/26/2023] [Indexed: 07/15/2023]
Abstract
Individual cells have many unique properties that can be quantified to develop a holistic understanding of a population. This can include understanding population characteristics, identifying subpopulations, or elucidating outlier characteristics that may be indicators of disease. Electrical impedance measurements are rapid and label-free for the monitoring of single cells and generate large datasets of many cells at single or multiple frequencies. To increase the accuracy and sensitivity of measurements and define the relationships between impedance and biological features, many electrical measurement systems have incorporated machine learning (ML) paradigms for control and analysis. Considering the difficulty capturing complex relationships using traditional modelling and statistical methods due to population heterogeneity, ML offers an exciting approach to the systemic collection and analysis of electrical properties in a data-driven way. In this work, we discuss incorporation of ML to improve the field of electrical single cell analysis by addressing the design challenges to manipulate single cells and sophisticated analysis of electrical properties that distinguish cellular changes. Looking forward, we emphasize the opportunity to build on integrated systems to address common challenges in data quality and generalizability to save time and resources at every step in electrical measurement of single cells.
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Affiliation(s)
- Caroline Ferguson
- Department of Bioengineering, Lehigh University, Bethlehem, PA 18015, USA
| | - Yu Zhang
- Department of Bioengineering, Lehigh University, Bethlehem, PA 18015, USA
| | - Cristiano Palego
- Department of Computer Science and Electronic Engineering, Bangor University, Bangor LL57 2DG, UK
| | - Xuanhong Cheng
- Department of Bioengineering, Lehigh University, Bethlehem, PA 18015, USA
- Department of Materials Science and Engineering, Lehigh University, Bethlehem, PA 18015, USA
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McKelvy JA, Novikova I, Mikhailov EE, Maldonado MA, Fan I, Li Y, Wang YJ, Kitching J, Matsko AB. Application of kernel principal component analysis for optical vector atomic magnetometry. MACHINE LEARNING: SCIENCE AND TECHNOLOGY 2023; 4:10.1088/2632-2153/ad0fa4. [PMID: 38915391 PMCID: PMC11194693 DOI: 10.1088/2632-2153/ad0fa4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/26/2024] Open
Abstract
Vector atomic magnetometers that incorporate electromagnetically induced transparency (EIT) allow for precision measurements of magnetic fields that are sensitive to the directionality of the observed field by virtue of fundamental physics. However, a practical methodology of accurately recovering the longitudinal angle of the local field through observations of EIT spectra has not been established. In this work, we address this problem of angle determination with an unsupervised machine learning algorithm utilizing nonlinear dimensionality reduction. The proposed algorithm was developed to interface with spectroscopic measurements from an EIT-based atomic rubidium magnetometer and uses kernel principal component analysis (KPCA) as an unsupervised feature extraction tool. The resulting KPCA features allow each EIT spectrum measurement to be represented by a single coordinate in a new reduced dimensional feature space, thereby streamlining the process of angle determination. A supervised support vector regression (SVR) machine was implemented to model the resulting relationship between the KPCA projections and field direction. If the magnetometer is configured so that the azimuthal angle of the field is defined with a polarization lock, the KPCA-SVR algorithm is capable of predicting the longitudinal angle of the local magnetic field within 1 degree of accuracy and the magnitude of the absolute field with a resolution of 70 nT. The combined scalar and angular sensitivity of this method make the KPCA-enabled EIT magnetometer competitive with conventional vector magnetometry methods.
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Affiliation(s)
- James A McKelvy
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, United States of America
| | - Irina Novikova
- Physics Department, College of William & Mary, Willaimsburg, VA 23187, United States of America
| | - Eugeniy E Mikhailov
- Physics Department, College of William & Mary, Willaimsburg, VA 23187, United States of America
| | - Mario A Maldonado
- Physics Department, College of William & Mary, Willaimsburg, VA 23187, United States of America
| | - Isaac Fan
- National Institute of Standards and Technology, Boulder CO 80305, United States of America
| | - Yang Li
- National Institute of Standards and Technology, Boulder CO 80305, United States of America
| | - Ying-Ju Wang
- National Institute of Standards and Technology, Boulder CO 80305, United States of America
| | - John Kitching
- National Institute of Standards and Technology, Boulder CO 80305, United States of America
| | - Andrey B Matsko
- Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109, United States of America
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Faura G, Boix-Lemonche G, Holmeide AK, Verkauskiene R, Volke V, Sokolovska J, Petrovski G. Colorimetric and Electrochemical Screening for Early Detection of Diabetes Mellitus and Diabetic Retinopathy-Application of Sensor Arrays and Machine Learning. SENSORS 2022; 22:s22030718. [PMID: 35161465 PMCID: PMC8839630 DOI: 10.3390/s22030718] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2021] [Revised: 12/20/2021] [Accepted: 12/26/2021] [Indexed: 12/13/2022]
Abstract
In this review, a selection of works on the sensing of biomarkers related to diabetes mellitus (DM) and diabetic retinopathy (DR) are presented, with the scope of helping and encouraging researchers to design sensor-array machine-learning (ML)-supported devices for robust, fast, and cost-effective early detection of these devastating diseases. First, we highlight the social relevance of developing systematic screening programs for such diseases and how sensor-arrays and ML approaches could ease their early diagnosis. Then, we present diverse works related to the colorimetric and electrochemical sensing of biomarkers related to DM and DR with non-invasive sampling (e.g., urine, saliva, breath, tears, and sweat samples), with a special mention to some already-existing sensor arrays and ML approaches. We finally highlight the great potential of the latter approaches for the fast and reliable early diagnosis of DM and DR.
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Affiliation(s)
- Georgina Faura
- Center for Eye Research, Department of Ophthalmology, Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Kirkeveien 166, 0450 Oslo, Norway; (G.F.); (G.B.-L.)
- Department of Medical Biochemistry, Institute of Clinical Medicine, University of Oslo, 0424 Oslo, Norway
| | - Gerard Boix-Lemonche
- Center for Eye Research, Department of Ophthalmology, Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Kirkeveien 166, 0450 Oslo, Norway; (G.F.); (G.B.-L.)
| | | | - Rasa Verkauskiene
- Institute of Endocrinology, Medical Academy, Lithuanian University of Health Sciences, LT-50009 Kaunas, Lithuania;
| | - Vallo Volke
- Department of Physiology, Institute of Biomedicine and Translational Medicine, University of Tartu, 19 Ravila Street, 50411 Tartu, Estonia;
- Institute of Biomedical and Transplant Medicine, Department of Medical Sciences, Tartu University Hospital, L. Puusepa Street, 51014 Tartu, Estonia
| | | | - Goran Petrovski
- Center for Eye Research, Department of Ophthalmology, Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Kirkeveien 166, 0450 Oslo, Norway; (G.F.); (G.B.-L.)
- Department of Ophthalmology, Oslo University Hospital, 0450 Oslo, Norway
- Correspondence: ; Tel.: +47-9222-6158
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Predicting Pressure Sensitivity to Luminophore Content and Paint Thickness of Pressure-Sensitive Paint Using Artificial Neural Network. SENSORS 2021; 21:s21155188. [PMID: 34372426 PMCID: PMC8347181 DOI: 10.3390/s21155188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 07/25/2021] [Accepted: 07/28/2021] [Indexed: 11/17/2022]
Abstract
An artificial neural network (ANN) was constructed and trained for predicting pressure sensitivity using an experimental dataset consisting of luminophore content and paint thickness as chemical and physical inputs. A data augmentation technique was used to increase the number of data points based on the limited experimental observations. The prediction accuracy of the trained ANN was evaluated by using a metric, mean absolute percentage error. The ANN predicted pressure sensitivity to luminophore content and to paint thickness, within confidence intervals based on experimental errors. The present approach of applying ANN and the data augmentation has the potential to predict pressure-sensitive paint (PSP) characterizations that improve the performance of PSP for global surface pressure measurements.
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An Automated Machine-Learning Approach for Road Pothole Detection Using Smartphone Sensor Data. SENSORS 2020; 20:s20195564. [PMID: 32998427 PMCID: PMC7583950 DOI: 10.3390/s20195564] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2020] [Revised: 09/22/2020] [Accepted: 09/22/2020] [Indexed: 11/27/2022]
Abstract
Road surface monitoring and maintenance are essential for driving comfort, transport safety and preserving infrastructure integrity. Traditional road condition monitoring is regularly conducted by specially designed instrumented vehicles, which requires time and money and is only able to cover a limited proportion of the road network. In light of the ubiquitous use of smartphones, this paper proposes an automatic pothole detection system utilizing the built-in vibration sensors and global positioning system receivers in smartphones. We collected road condition data in a city using dedicated vehicles and smartphones with a purpose-built mobile application designed for this study. A series of processing methods were applied to the collected data, and features from different frequency domains were extracted, along with various machine-learning classifiers. The results indicated that features from the time and frequency domains outperformed other features for identifying potholes. Among the classifiers tested, the Random Forest method exhibited the best classification performance for potholes, with a precision of 88.5% and recall of 75%. Finally, we validated the proposed method using datasets generated from different road types and examined its universality and robustness.
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Air Quality Monitoring for Vulnerable Groups in Residential Environments Using a Multiple Hazard Gas Detector. SENSORS 2019; 19:s19020362. [PMID: 30658412 PMCID: PMC6359352 DOI: 10.3390/s19020362] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 01/07/2019] [Accepted: 01/12/2019] [Indexed: 11/17/2022]
Abstract
This paper presents a smart "e-nose" device to monitor indoor hazardous air. Indoor hazardous odor is a threat for seniors, infants, children, pregnant women, disabled residents, and patients. To overcome the limitations of using existing non-intelligent, slow-responding, deficient gas sensors, we propose a novel artificial-intelligent-based multiple hazard gas detector (MHGD) system that is mounted on a motor vehicle-based robot which can be remotely controlled. First, we optimized the sensor array for the classification of three hazardous gases, including cigarette smoke, inflammable ethanol, and off-flavor from spoiled food, using an e-nose with a mixing chamber. The mixing chamber can prevent the impact of environmental changes. We compared the classification results of all combinations of sensors, and selected the one with the highest accuracy (98.88%) as the optimal sensor array for the MHGD. The optimal sensor array was then mounted on the MHGD to detect and classify the target gases without a mixing chamber but in a controlled environment. Finally, we tested the MHGD under these conditions, and achieved an acceptable accuracy (70.00%).
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Multivariate Statistical Process Control Using Enhanced Bottleneck Neural Network. ALGORITHMS 2017. [DOI: 10.3390/a10020049] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Peirano DJ, Pasamontes A, Davis CE. Supervised Semi-Automated Data Analysis Software for Gas Chromatography / Differential Mobility Spectrometry (GC/DMS) Metabolomics Applications. ACTA ACUST UNITED AC 2016; 19:155-166. [PMID: 27799845 DOI: 10.1007/s12127-016-0200-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Modern differential mobility spectrometers (DMS) produce complex and multi-dimensional data streams that allow for near-real-time or post-hoc chemical detection for a variety of applications. An active area of interest for this technology is metabolite monitoring for biological applications, and these data sets regularly have unique technical and data analysis end user requirements. While there are initial publications on how investigators have individually processed and analyzed their DMS metabolomic data, there are no user-ready commercial or open source software packages that are easily used for this purpose. We have created custom software uniquely suited to analyze gas chromatograph / differential mobility spectrometry (GC/DMS) data from biological sources. Here we explain the implementation of the software, describe the user features that are available, and provide an example of how this software functions using a previously-published data set. The software is compatible with many commercial or home-made DMS systems. Because the software is versatile, it can also potentially be used for other similarly structured data sets, such as GC/GC and other IMS modalities.
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Affiliation(s)
- Daniel J Peirano
- Mechanical and Aerospace Engineering, University of California, Davis, One Shields Avenue, Davis CA, 95616
| | - Alberto Pasamontes
- Mechanical and Aerospace Engineering, University of California, Davis, One Shields Avenue, Davis CA, 95616
| | - Cristina E Davis
- Mechanical and Aerospace Engineering, University of California, Davis, One Shields Avenue, Davis CA, 95616
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Intelligent detection of cracks in metallic surfaces using a waveguide sensor loaded with metamaterial elements. SENSORS 2015; 15:11402-16. [PMID: 25988871 PMCID: PMC4481976 DOI: 10.3390/s150511402] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/28/2015] [Revised: 05/05/2015] [Accepted: 05/06/2015] [Indexed: 11/20/2022]
Abstract
This work presents a real-life experiment implementing an artificial intelligence model for detecting sub-millimeter cracks in metallic surfaces on a dataset obtained from a waveguide sensor loaded with metamaterial elements. Crack detection using microwave sensors is typically based on human observation of change in the sensor's signal (pattern) depicted on a high-resolution screen of the test equipment. However, as demonstrated in this work, implementing artificial intelligence to classify cracked from non-cracked surfaces has appreciable impacts in terms of sensing sensitivity, cost, and automation. Furthermore, applying artificial intelligence for post-processing the data collected from microwave sensors is a cornerstone for handheld test equipment that can outperform rack equipment with large screens and sophisticated plotting features. The proposed method was tested on a metallic plate with different cracks, and the experimental results showed good crack classification accuracy rates.
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Zhao W, Davis CE. A modified artificial immune system based pattern recognition approach--an application to clinical diagnostics. Artif Intell Med 2011; 52:1-9. [PMID: 21515033 DOI: 10.1016/j.artmed.2011.03.001] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2010] [Revised: 03/02/2011] [Accepted: 03/11/2011] [Indexed: 12/27/2022]
Abstract
OBJECTIVE This paper introduces a modified artificial immune system (AIS)-based pattern recognition method to enhance the recognition ability of the existing conventional AIS-based classification approach and demonstrates the superiority of the proposed new AIS-based method via two case studies of breast cancer diagnosis. METHODS AND MATERIALS Conventionally, the AIS approach is often coupled with the k nearest neighbor (k-NN) algorithm to form a classification method called AIS-kNN. In this paper we discuss the basic principle and possible problems of this conventional approach, and propose a new approach where AIS is integrated with the radial basis function--partial least square regression (AIS-RBFPLS). Additionally, both the two AIS-based approaches are compared with two classical and powerful machine learning methods, back-propagation neural network (BPNN) and orthogonal radial basis function network (Ortho-RBF network). RESULTS The diagnosis results show that: (1) both the AIS-kNN and the AIS-RBFPLS proved to be a good machine leaning method for clinical diagnosis, but the proposed AIS-RBFPLS generated an even lower misclassification ratio, especially in the cases where the conventional AIS-kNN approach generated poor classification results because of possible improper AIS parameters. For example, based upon the AIS memory cells of "replacement threshold=0.3", the average misclassification ratios of two approaches for study 1 are 3.36% (AIS-RBFPLS) and 9.07% (AIS-kNN), and the misclassification ratios for study 2 are 19.18% (AIS-RBFPLS) and 28.36% (AIS-kNN); (2) the proposed AIS-RBFPLS presented its robustness in terms of the AIS-created memory cells, showing a smaller standard deviation of the results from the multiple trials than AIS-kNN. For example, using the result from the first set of AIS memory cells as an example, the standard deviations of the misclassification ratios for study 1 are 0.45% (AIS-RBFPLS) and 8.71% (AIS-kNN) and those for study 2 are 0.49% (AIS-RBFPLS) and 6.61% (AIS-kNN); and (3) the proposed AIS-RBFPLS classification approaches also yielded better diagnosis results than two classical neural network approaches of BPNN and Ortho-RBF network. CONCLUSION In summary, this paper proposed a new machine learning method for complex systems by integrating the AIS system with RBFPLS. This new method demonstrates its satisfactory effect on classification accuracy for clinical diagnosis, and also indicates its wide potential applications to other diagnosis and detection problems.
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Affiliation(s)
- Weixiang Zhao
- Department of Mechanical and Aerospace Engineering, One Shields Avenue, University of California, Davis, CA 95616, United States
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Miniature Differential Mobility Spectrometry (DMS) Advances towards Portable Autonomous Health Diagnostic Systems. ACTA ACUST UNITED AC 2010. [DOI: 10.1007/978-3-642-15687-8_3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/13/2023]
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Zhao W, Davis CE. Swarm intelligence based wavelet coefficient feature selection for mass spectral classification: an application to proteomics data. Anal Chim Acta 2009; 651:15-23. [PMID: 19733729 DOI: 10.1016/j.aca.2009.08.008] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2009] [Revised: 08/06/2009] [Accepted: 08/11/2009] [Indexed: 10/20/2022]
Abstract
This paper introduces the ant colony algorithm, a novel swarm intelligence based optimization method, to select appropriate wavelet coefficients from mass spectral data as a new feature selection method for ovarian cancer diagnostics. By determining the proper parameters for the ant colony algorithm (ACA) based searching algorithm, we perform the feature searching process for 100 times with the number of selected features fixed at 5. The results of this study show: (1) the classification accuracy based on the five selected wavelet coefficients can reach up to 100% for all the training, validating and independent testing sets; (2) the eight most popular selected wavelet coefficients of the 100 runs can provide 100% accuracy for the training set, 100% accuracy for the validating set, and 98.8% accuracy for the independent testing set, which suggests the robustness and accuracy of the proposed feature selection method; and (3) the mass spectral data corresponding to the eight popular wavelet coefficients can be located by reverse wavelet transformation and these located mass spectral data still maintain high classification accuracies (100% for the training set, 97.6% for the validating set, and 98.8% for the testing set) and also provide sufficient physical and medical meaning for future ovarian cancer mechanism studies. Furthermore, the corresponding mass spectral data (potential biomarkers) are in good agreement with other studies which have used the same sample set. Together these results suggest this feature extraction strategy will benefit the development of intelligent and real-time spectroscopy instrumentation based diagnosis and monitoring systems.
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Affiliation(s)
- Weixiang Zhao
- Department of Mechanical and Aeronautical Engineering, One Shields Avenue, University of California, Davis, CA 95616, United States
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