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Utomo C, Tanjung ZA, Aditama R, Pratomo ADM, Buana RFN, Putra HSG, Tryono R, Liwang T. Whole-genome sequencing of Ganoderma boninense, the causal agent of basal stem rot disease in oil palm, via combined short- and long-read sequencing. Sci Rep 2024; 14:10520. [PMID: 38714765 PMCID: PMC11076493 DOI: 10.1038/s41598-024-60713-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2023] [Accepted: 04/26/2024] [Indexed: 05/10/2024] Open
Abstract
The hemibiotrophic Basidiomycete pathogen Ganoderma boninense (Gb) is the dominant causal agent of oil palm basal stem rot disease. Here, we report a complete chromosomal genome map of Gb using a combination of short-read Illumina and long-read Pacific Biosciences (PacBio) sequencing platforms combined with chromatin conformation capture data from the Chicago and Hi-C platforms. The genome was 55.87 Mb in length and assembled to a high contiguity (N50: 304.34 kb) of 12 chromosomes built from 112 scaffolds, with a total of only 4.34 Mb (~ 7.77%) remaining unplaced. The final assemblies were evaluated for completeness of the genome by using Benchmarking Universal Single Copy Orthologs (BUSCO) v4.1.4, and based on 4464 total BUSCO polyporales group searches, the assemblies yielded 4264 (95.52%) of the conserved orthologs as complete and only a few fragmented BUSCO of 42 (0.94%) as well as a missing BUSCO of 158 (3.53%). Genome annotation predicted a total of 21,074 coding genes, with a GC content ratio of 59.2%. The genome features were analyzed with different databases, which revealed 2471 Gene Ontology/GO (11.72%), 5418 KEGG (Kyoto Encyclopedia of Genes and Genomes) Orthologous/KO (25.71%), 13,913 Cluster of Orthologous Groups of proteins/COG (66.02%), 60 ABC transporter (0.28%), 1049 Carbohydrate-Active Enzymes/CAZy (4.98%), 4005 pathogen-host interactions/PHI (19%), and 515 fungal transcription factor/FTFD (2.44%) genes. The results obtained in this study provide deep insight for further studies in the future.
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Affiliation(s)
- Condro Utomo
- Department of Biotechnology, PT SMART Tbk, Bogor, 16810, Indonesia.
| | | | - Redi Aditama
- Section of Bioinformatics, PT SMART Tbk, Bogor, 16810, Indonesia
| | | | | | | | - Reno Tryono
- Section of Genetic Engineering, PT SMART Tbk, Bogor, 16810, Indonesia
| | - Tony Liwang
- Division of Plant Production and Biotechnology, PT SMART Tbk, Bogor, 16810, Indonesia
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Zakaria L. Basal Stem Rot of Oil Palm: The Pathogen, Disease Incidence, and Control Methods. PLANT DISEASE 2023; 107:603-615. [PMID: 35819350 DOI: 10.1094/pdis-02-22-0358-fe] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Basal stem rot of oil palm caused by Ganoderma boninense is the most serious disease of oil palm in Malaysia, Indonesia, and other oil-palm-producing countries. Economic losses caused by the disease can be up to USD500 million a year. For many years, basal stem rot was found to infect older palm trees of more than 25 to 30 years in age. Only in the 1950s, the disease began to appear in much younger palm trees, 10 to 15 years old, and, in the last decade or so, palm trees as young as 1 year were infected by the disease. The highest incidence occurs in coastal areas of Southeast Asia but the disease has now infected oil palm in inland areas, mainly oil palm planted in peat soils. Disease incidence is also high in areas previously growing coconut or forest. Basal stem rot infection and spread occur through root-to-root contact, and basidiospores that colonize the roots also play a role. In the early stages of infection by G. boninense, the pathogen behaves as a biotroph and later as a necrotroph, secreting cell-wall-degrading enzymes and triggering host defense responses. Genes, gene products, and metabolic pathways involved in oil palm defense mechanisms against G. boninense have been identified and these metabolites have the potential to be used as markers for early detection of the disease. Integrated disease management used to control basal stem rot includes cultural practices, chemical control, and application of biocontrol agents or fertilizers. Early detection tools have also been developed that could assist in management of basal stem rot infections. Development of resistant or tolerant oil palm is still at an early stage; therefore, the existing integrated disease management practices remain the most appropriate methods for managing basal stem rot of oil palm.
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Affiliation(s)
- Latiffah Zakaria
- School of Biological Sciences, Universiti Sains Malaysia, 11800 USM Pulau Pinang, Malaysia
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3
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Lim JA, Yaacob JS, Mohd Rasli SRA, Eyahmalay JE, El Enshasy HA, Zakaria MRS. Mitigating the repercussions of climate change on diseases affecting important crop commodities in Southeast Asia, for food security and environmental sustainability—A review. FRONTIERS IN SUSTAINABLE FOOD SYSTEMS 2023. [DOI: 10.3389/fsufs.2022.1030540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
Abstract
Southeast Asia is a fertile land with a warm and humid climate which tends to accommodate various food crops. The development and advancement of the agricultural sector not only allows the countries in the region to feed the increasing population, but are also able to boost the nation's economy through exportation of the crops. Some of the well-known and economically-significant plant commodities found in the region include rice, oil palm, rubber, coconut, banana, sugarcane, pineapple, black pepper, maize, cocoa, durian, and jackfruit. Due to the high production of crops, Southeast Asia is able to stand among the top world producers of these commodities. Nevertheless, the widespread of pathogenic microorganisms has posed a serious threat to the industry over the years; with hundreds of millions of money wasted and total yield being lost due to the devastating diseases associated with each type of the plants. A lot of attention and effort have been continuously devoted to find effective plant management strategies to combat plant diseases, starting from traditional physical and chemical methods to the increasing discoveries on biological approaches made in recent decades. Due to the challenges and limitations faced by conventional approaches and the rising awareness toward the environment, more work has been focused on establishing the application of beneficial microorganisms to tackle plant diseases through direct mechanisms. Thus, by bringing the common plant commodities in Southeast Asia, their associated diseases and various physical, chemical and biological control measures together, this review aims to provide clearer insights and practical information to those who seek to limit the damages caused by plant diseases.
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Green Approaches, Potentials, and Applications of Zinc Oxide Nanoparticles in Surface Coatings and Films. Bioinorg Chem Appl 2022; 2022:3077747. [PMID: 35966407 PMCID: PMC9371815 DOI: 10.1155/2022/3077747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2022] [Accepted: 06/22/2022] [Indexed: 11/17/2022] Open
Abstract
Interest in the use of zinc oxide nanoparticles (ZnO NPs) in surface coatings and films has increased as its incorporation can significantly improve the mechanical and antimicrobial properties of coatings and film solutions. In an effort to produce green or eco-friendly products, the potential use of ZnO NPs biosynthesized from natural resources to replace conventional petroleum-derived polymers has been investigated. This review provides an insight into the growing trend of incorporating ZnO NPs into synthetic or semi-synthetic or bio-based polymeric materials via different synthesis methods as well as its characteristics and potential applications in surface coatings and films. The antimicrobial potential of ZnO NPs to inhibit the growth of various types of microorganisms as well as its use in surface coatings or films to impart antimicrobial activities that prevent the spread of microorganisms, especially the COVID-19 virus, was also discussed.
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Sustainable Oil Palm Resource Assessment Based on an Enhanced Deep Learning Method. ENERGIES 2022. [DOI: 10.3390/en15124479] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
Knowledge of the number and distribution of oil palm trees during the crop cycle is vital for sustainable management and predicting yields. The accuracy of the conventional image processing method is limited for the hand-crafted feature extraction method and the overfitting problem occurs due to the insufficient dataset. We propose a modification of the Faster Region-based Convolutional Neural Network (FRCNN) for palm tree detection to reduce the overfitting problem and improve the detection accuracy. The enhanced FRCNN (EFRCNN) leads to improved performance for detecting objects (in the same image) when they are of multiple sizes by using a feature concatenation method. Transfer learning based on a ResNet50 model is used to extract the features of the input image. High-resolution images of oil palm trees from a drone are used to form the data set, containing mature, young, and mixed oil palm tree regions. We train and test the EFRCNN, the FRCNN, a CNN used recently for oil palm image detection, and two standard methods, namely, the support vector machine (SVM) and template matching (TM). The results reveal an overall accuracy of ≥96.8% for the EFRCNN on the three test sets. The accuracy is higher than the CNN and FRCNN and substantially higher than SVM and TM. For large-scale plantations, the accuracy improvement is significant. This research provides a method for automatically counting the oil palm trees in large-scale plantations.
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Deep Learning to Improve the Sustainability of Agricultural Crops Affected by Phytosanitary Events: A Financial-Risk Approach. SUSTAINABILITY 2022. [DOI: 10.3390/su14116668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/07/2022]
Abstract
Given the challenges in reducing greenhouse gases (GHG), one of the sectors that have attracted the most attention in the Sustainable Development Agenda 2030 (SDA-2030) is the agricultural sector. In this context, one of the crops that has had the most remarkable development worldwide has been oil-palm cultivation, thanks to its high productive potential and being one of the most efficient sources of palmitic acid production. However, despite the significant presence of oil palm in the food sector, oil-palm crops have not been exempt from criticism, as its cultivation has developed mainly in areas of ecological conservation around the world. This criticism has been extended to other crops in the context of the Sustainable Development Goals (SDG) due to insecticides and fertilisers required to treat phytosanitary events in the field. To reduce this problem, researchers have used unmanned aerial vehicles (UAVs) to capture multi-spectral aerial images (MAIs) to assess fields’ plant vigour and detect phytosanitary events early using vegetation indices (VIs). However, detecting phytosanitary events in the early stages still suggests a technological challenge. Thus, to improve the environmental and financial sustainability of oil-palm crops, this paper proposes a hybrid deep-learning model (stacked–convolutional) for risk characterisation derived from a phytosanitary event, as suggested by lethal wilt (LW). For this purpose, the proposed model integrates a Lagrangian dispersion model of the backward-Gaussian-puff-tracking type into its convolutional structure, which allows describing the evolution of LW in the field for stages before a temporal reference scenario. The results show that the proposed model allowed the characterisation of the risk derived from a phytosanitary event, (PE) such as lethal wilt (LW), in the field, promoting improvement in agricultural environmental and financial sustainability activities through the integration of financial-risk concepts. This improved risk management will lead to lower projected losses due to a natural reduction in insecticides and fertilisers, allowing a balance between development and sustainability for this type of crop from the RSPO standards.
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Panel Products Made of Oil Palm Trunk: A Review of Potency, Environmental Aspect, and Comparison with Wood-Based Composites. Polymers (Basel) 2022; 14:polym14091758. [PMID: 35566927 PMCID: PMC9104621 DOI: 10.3390/polym14091758] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2022] [Revised: 04/20/2022] [Accepted: 04/23/2022] [Indexed: 12/28/2022] Open
Abstract
Oil palm plantations have expanded rapidly in Southeast Asia, particularly in Indonesia and Malaysia. A lot of products, including food and other edible products, oleo-chemicals, cosmetics, personal and household care, pharmaceutical products, and biodiesels are derived from palm oil, thus making them one of the most economically important plants. After 25-30 years of age, the palms are felled and replaced due to declining oil production. Oil palm trunks (OPT) are considered significant waste products. The trunks remain on the plantation site for nutrient recycling or burning. This increases insect and fungi populations causing environmental problems for the new palm generation or air pollution due to the fire. Up till now, OPT has received less attention in research studies. Therefore, this review summarizes the utilization of OPT into products made of oil palm fibers mainly derived from OPT and its application as the substitution of wood panel products. Some research works have been carried out on oil palm fibers that are derived from OPT for exploiting their potential as raw material of composite panel products, which is the objective of this review. Areas of development are processed into various conventional composite panel products such as plywood and laminated board which are usually predominantly made of wood and bonded by synthetic resins, particleboard with binder, or binderless and cement board which is arranged with wood as a minor component. All of the products have been presented and described technically according to best knowledge of the authors and literature review.
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Abubakar A, Ishak MY, Makmom AA. Nexus between climate change and oil palm production in Malaysia: a review. ENVIRONMENTAL MONITORING AND ASSESSMENT 2022; 194:262. [PMID: 35260915 DOI: 10.1007/s10661-022-09915-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/13/2021] [Accepted: 02/28/2022] [Indexed: 06/14/2023]
Abstract
Climate change is believed to be caused by natural processes such as volcanic eruptions, which release ash into the atmosphere, and anthropogenic activities that increase the concentration of greenhouse gases (GHGs) in the atmosphere, such as carbon dioxide (CO2), which trap energy and cause intense warming. This article conducts a comprehensive review of existing literature relating to climate change and its impact on oil palm production in Malaysia. To enable analysis, articles were arranged, sorted, and categorized into various themes and associations based on the title of the article, abstract, and later the content. The findings reveal that climate change causes variability in the intensity and duration of rainfall, which ultimately affects the production of oil palm fresh fruit bunches (FFB) and the quality of crude palm oil (CPO). The decline in FFB increased the price of crude palm oil. The impacts of climate change on oil palm vary and are felt differently in different regions. Climate change increases the vulnerability and exposure of oil palms to various diseases, exposes them to water stress, and disrupts metabolic activities. The surface temperature in Malaysia is anticipated to rise by 1.5 to 2 °C, worsening the adaptation plans. Oil palm growers explore possible ways to adapt to and withstand the impacts of climate change by adopting the use of an improved variety of oil palm seedlings, soil management and fertility preservation, silt pit, mulching, intercropping, livelihood diversification, buying insurance, and best water conservation practices.
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Affiliation(s)
- Ahmed Abubakar
- Faculty of Forestry and Environment, Universiti Putra Malaysia, UPM, 43400 Serdang, Selangor, Malaysia.
| | - Mohd Yusoff Ishak
- Faculty of Forestry and Environment, Universiti Putra Malaysia, UPM, 43400 Serdang, Selangor, Malaysia
| | - Abdullah Ahmad Makmom
- Faculty of Forestry and Environment, Universiti Putra Malaysia, UPM, 43400 Serdang, Selangor, Malaysia
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Zakaria NZJ, Rozali S, Mubarak NM, Ibrahim S. A review of the recent trend in the synthesis of carbon nanomaterials derived from oil palm by-product materials. BIOMASS CONVERSION AND BIOREFINERY 2022; 14:1-32. [PMID: 35194538 PMCID: PMC8853439 DOI: 10.1007/s13399-022-02430-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 01/28/2022] [Accepted: 02/02/2022] [Indexed: 06/14/2023]
Abstract
Grown only in humid tropical conditions, the palm tree provides high-quality oil essential for cooking and personal care or biofuel in the energy sector. After the refining process, this demand could cause numerous oil palm biomass waste management problems. However, the emergence of carbon nanomaterials or CNMs could be a great way to put this waste to a good cause. The composition of the palm waste can be used as a green precursor or starting materials for synthesizing CNMs. Hence, this review paper summarizes the recent progress for the CNMs production for the past 10 years. This review paper extensively discusses the method for processing CNMs, chemical vapor deposition, pyrolysis, and microwave by the current synthesis method. The parameters and conditions of the synthesis are also analyzed. The application of the CNMs from palm oil and future recommendations are also highlighted. Generally, this paper could be a handy guide in assisting the researchers in exploring economic yet simple procedures in synthesizing carbon-based nanostructured materials derived from palm oil that can fulfill the required applications. GRAPHICAL ABSTRACT
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Affiliation(s)
- Nurul Zariah Jakaria Zakaria
- Department of Mechanical Engineering, Faculty of Engineering, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Shaifulazuar Rozali
- Department of Mechanical Engineering, Faculty of Engineering, University of Malaya, 50603 Kuala Lumpur, Malaysia
| | - Nabisab Mujawar Mubarak
- Petroleum and Chemical Engineering, Faculty of Engineering, Universiti Teknologi Brunei, Bandar Seri Begawan, BE1410 Brunei Darussalam
| | - Suriani Ibrahim
- Department of Mechanical Engineering, Faculty of Engineering, University of Malaya, 50603 Kuala Lumpur, Malaysia
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10
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Early Detection of Basal Stem Rot Disease in Oil Palm Tree Using Unmanned Aerial Vehicle-Based Hyperspectral Imaging. REMOTE SENSING 2022. [DOI: 10.3390/rs14030799] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Abstract
Early detection of basal stem rot (BSR) disease in oil palm trees is important for the sustainable production of palm oil in the limited land for plantation in Southeast Asia. However, previous studies based on satellite and aircraft hyperspectral remote sensing could not discriminate oil palm trees in the early-stage of the BSR disease from healthy or late-stage trees. In this study, hyperspectral imaging of oil palm trees from an unmanned aerial vehicle (UAV) and machine learning using a random forest algorithm were employed for the classification of four infection categories of the BSR disease: healthy, early-stage, late-stage, and dead trees. A concentric disk segmentation was applied to tree crown segmentation at the sub-plant scale, and recursive feature elimination was used for feature selection. The results revealed that the classification performance for the early-stage trees is maximum at the specific tree crown segments, and only a few spectral bands in the red-edge region are sufficient to classify the infection categories. These findings will be useful for future UAV-based multispectral imaging to efficiently cover a wide area of oil palm plantations for the early detection of BSR disease.
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Wei L, John Martin JJ, Zhang H, Zhang R, Cao H. Problems and Prospects of Improving Abiotic Stress Tolerance and Pathogen Resistance of Oil Palm. PLANTS 2021; 10:plants10122622. [PMID: 34961092 PMCID: PMC8704689 DOI: 10.3390/plants10122622] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/02/2021] [Revised: 11/18/2021] [Accepted: 11/26/2021] [Indexed: 12/03/2022]
Abstract
Oil palm crops are the most important determinant of the agricultural economy within the segment of oilseed crops. Oil palm growing in their natural habitats are often challenged simultaneously by multiple stress factors, both abiotic and biotic that limit crop productivity and are major constraints to meeting global food demands. The stress-tolerant oil palm crops that mitigate the effects of abiotic stresses on crop productivity are crucially needed to sustain agricultural production. Basal stem rot threatens the development of the industry, and the key to solving the problem is to breed new oil palm varieties resistant to adversity. This has created a need for genetic improvement which involves evaluation of germplasm, pest and disease resistance, earliness and shattering resistance, quality of oil, varieties for different climatic conditions, etc. In recent years, insights into physiology, molecular biology, and genetics have significantly enhanced our understanding of oil palm response towards such stimuli as well as the reason for varietal diversity in tolerance. In this review, we explore the research progress, existing problems, and prospects of oil palm stress resistance-based physiological mechanisms of stress tolerance as well as the genes and metabolic pathways that regulate stress response.
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Affiliation(s)
- Lu Wei
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China; (L.W.); (J.J.J.M.); (H.Z.); (R.Z.)
- Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang 571339, China
| | - Jerome Jeyakumar John Martin
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China; (L.W.); (J.J.J.M.); (H.Z.); (R.Z.)
- Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang 571339, China
| | - Haiqing Zhang
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China; (L.W.); (J.J.J.M.); (H.Z.); (R.Z.)
- Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang 571339, China
| | - Ruining Zhang
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China; (L.W.); (J.J.J.M.); (H.Z.); (R.Z.)
- Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang 571339, China
| | - Hongxing Cao
- Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang 571339, China; (L.W.); (J.J.J.M.); (H.Z.); (R.Z.)
- Hainan Key Laboratory of Tropical Oil Crops Biology, Wenchang 571339, China
- Correspondence:
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Widada J, Damayanti E, Alhakim MR, Yuwono T, Mustofa M. Two strains of airborne Nocardiopsis alba producing different volatile organic compounds (VOCs) as biofungicide for Ganoderma boninense. FEMS Microbiol Lett 2021; 368:6425125. [PMID: 34758070 DOI: 10.1093/femsle/fnab138] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2021] [Accepted: 10/25/2021] [Indexed: 12/25/2022] Open
Abstract
Nocardiopsis are actinobacteria which produce active compounds, such as antifungals and volatile compounds. Ganoderma boninense is a pathogenic and aggressive fungus that decreases palm oil yield during production. In this study, we isolated two strains of Nocardia (GME01 and GME22) from airborne contaminants on the actinobacteria culture collection in the laboratory. The aim of this study is to identify two strains of Nocardiopsis and to obtain the antifungal potency of volatile organic compounds (VOCs) against G. boninese. We characterized the morphology using Scanning Electrone Microscope (SEM), molecular properties and whole-cell protein spectra using Matrix Assisted Laser Desorption Ionization Time of Flight Mass Spectrometry (MALDI-TOF MS), antifungal assay on G. boninense and VOCs analysis of Nocardia using solid phase micro extraction/gas chromatography (SPME/GC). The two Nocardiopsis strains had the similar characteristic such as white aerial mycelium and spores, aerobic, grow well on ISP-2, TSA and NA medium without diffusible pigment and had the highest similarity with Nocardiopsis alba DSM 43377 (99.63% and 99.55% similarity for GME01 and GME22, respectively), Different morphological feature was found in aerial mycelium and spores. GME22 has a clearly fragmented mycelium whereas GME01 has none. Other features also showed different on the whole-cell protein spectra, antifungal activity and VOCs profiles. Antifungal activity assay on G. boninense showed that N. alba GME22 has higher antifungal activity than GME01 related with the VOCs abundance in two strains. Almost 38.3% (18 VOCs) of N. alba GME22 and 25.5% (12 VOCs) of N. alba GME01 were found specifically in each strain, and 36.2% (the 17 same VOCs) produced by both. The known volatile antifungal compounds S-methyl ethanethioate, 1,2-dimethyldisulfane, acetic acid, 2-methyl propanoic acid, 3-methyl-butanoic acid, nonan-2-one, undecan-2-one and 2-isopropyl-5-methylcyclohexan-1-ol only produced by N. alba GME22 and 1,3-dimethyltrisulfane only produced by N. alba GME01. A total of two known antifungal compounds 1,2-dimethyldisulfane and 6-methylheptan-2-one were produced by both N. alba. The abundance of antifungal VOCs produced by these bacteria is potentially to be used as biocontrol agent for pathogenic fungi in plants.
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Affiliation(s)
- Jaka Widada
- Department of Agricultural Microbiology, Faculty of Agriculture, Jl. Flora No. 1, Bulaksumur, Yogyakarta, Indonesia
| | - Ema Damayanti
- Research Division for Natural Product Technology, Indonesian Institute of Sciences, Jl. Jogja Wonosari KM 31.5, Gunungkidul, Yogyakarta, Indonesia.,National Research and Innovation Agency, Yogyakarta, Indonesia
| | - Mohammad Ryan Alhakim
- Department of Agricultural Microbiology, Faculty of Agriculture, Jl. Flora No. 1, Bulaksumur, Yogyakarta, Indonesia
| | - Triwibowo Yuwono
- Department of Agricultural Microbiology, Faculty of Agriculture, Jl. Flora No. 1, Bulaksumur, Yogyakarta, Indonesia
| | - Mustofa Mustofa
- Department of Pharmacology and Therapy, Faculty of Medicine, Public Health and Nursing, Jl. Farmako, Sekip Utara, Bulaksumur, Yogyakarta, Indonesia
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Tareen A, Punsuvon V, Sultan IN, Khan MW, Parakulsuksatid P. Cellulase Addition and Pre-hydrolysis Effect of High Solid Fed-Batch Simultaneous Saccharification and Ethanol Fermentation from a Combined Pretreated Oil Palm Trunk. ACS OMEGA 2021; 6:26119-26129. [PMID: 34660972 PMCID: PMC8515579 DOI: 10.1021/acsomega.1c03111] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2021] [Accepted: 09/16/2021] [Indexed: 06/13/2023]
Abstract
In the current study, alkaline hydrogen peroxide pretreated oil palm trunk fibers were subjected to ethanol production via simultaneous saccharification and fermentation (SSF). The effect of high substrate loading, enzyme and substrate feeding strategy, and influence of a pre-hydrolysis step in SSF was studied to scale up ethanol production. In the enzyme feeding strategy, the addition of an enzyme at the start of fed-batch SSF significantly (p < 0.05) increased ethanol concentration to 51.05 g/L, ethanol productivity (QP ) to 0.61 g/L·h, and ethanol yield (Y P/S) to 0.31 g/g, with a theoretical ethanol yield of 60.65%. Furthermore, the initial velocity of the enzyme (V 0) in the first 8 h was 2.27 (g/h) with a glucose concentration of 18.17 g/L. On the other hand, the substrate feeding strategy and pre-hydrolysis simultaneous saccharification and fermentation (PSSF) process were studied in a 1 L fermenter. PSSF in fed batch with 10 and 20% (w/v) significantly improved enzyme hydrolysis, circumvent the problems of high viscosity, reduced overall fermentation time, and gave the highest ethanol concentration of 51.66 g/L, ethanol productivity (QP ) of 0.72 g/L·h, ethanol yield (Y P/S) of 0.31 g/g, and theoretical ethanol yield of 60.66%. In addition, PSSF with 10 and 20% significantly increased the initial velocity of the enzyme (V 0) to 4.64 and 4.40 (g/h) and glucose concentration to 37.14 and 35.27 g/L, respectively. This result indicated that ethanol production by PSSF along with substrate feeding could enhance ethanol production efficiently.
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Affiliation(s)
- Afrasiab
Khan Tareen
- Department
of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyao, Chatuchak, Bangkok 10900, Thailand
| | - Vittaya Punsuvon
- Department
of Chemistry, Faculty of Science, Kasetsart
University, 50 Ngam Wong Wan Rd, Ladyao, Chatuchak, Bangkok 10900, Thailand
| | - Imrana Niaz Sultan
- Department
of Biotechnology, Faculty of Life Sciences and Informatics, BUITEMS, Quetta 87300, Pakistan
| | - Muhammad Waseem Khan
- Department
of Biotechnology, Faculty of Life Sciences and Informatics, BUITEMS, Quetta 87300, Pakistan
| | - Pramuk Parakulsuksatid
- Department
of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyao, Chatuchak, Bangkok 10900, Thailand
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The Effects of Oil Palm Fronds Silage Supplemented with Urea-Calcium Hydroxide on Rumen Fermentation and Nutrient Digestibility of Thai Native-Anglo Nubian Goats. FERMENTATION-BASEL 2021. [DOI: 10.3390/fermentation7040218] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This study aimed to examine the combined effects of urea and calcium hydroxide ensiled oil palm fronds on rumen fermentation and digestibility of Thai native-Anglo Nubian goats. A 4 × 4 Latin square design was used to randomly assign four male crossbred goats (Thai native × Anglo Nubian). The dietary treatments were as follows: ensiled oil palm frond with no additives (EOPF as the control), urea 5% (50 g/kg fresh matter) (E-UOPF 5%), calcium hydroxide (Ca(OH)2) 5% (50 g/kg fresh matter) (E-CaOPF 5%), and combination of urea 2.5% (25 g/kg fresh matter) with Ca(OH)2 (25 g/kg fresh matter) (E-UCOPF 2.5%). The oil palm frond ensiled with different additives did not change the DM intake (p > 0.05). The total TMR intakes range from 69.39 to 77.09 g/kg BW0.75. The goats fed with E-UOPF 5.0% consumed significantly more CP than the other groups (p < 0.05). The E-UCOPF increased ME intake by 4.8%, compared with the control treatment (p < 0.05). E-UOPF 5% and E-UCOPF 2.5% significantly increased the CP digestibility by 19.7% and 17.1%, respectively (p < 0.05). Furthermore, E-CaOPF 5.0% and E-UCOPF 2.5% improved the NDF digestibility by about 10.9% and 9.90%, respectively (p < 0.05). The urea-containing oil palm frond (E-UOPF 5.0% and E-UCOPF 2.5%) had higher blood urea nitrogen (BUN) than the other groups (p < 0.05). The TVFA of goats fed E-UCOPF 2.5% was approximately 15.8% higher than that of goats provide EOPF (p < 0.05). The mean concentration of C3 increased by 7.90% and 11.61%, respectively, when E-CaOPF 5.0% and E-UCOPF 2.5% were provided instead of EOPF (p < 0.05). The total N intake and absorbed were highest (p < 0.05) when goats offered E-UOPF 5.0% (p < 0.05). The goats fed oil palm frond without additives had the lowest percentage of N-absorption/N intake (p < 0.05). This study clearly shows that the most suitable treatment is E-UCOPF 2.5%, which enhances DMD, nutrient digestibility, TVFAs, and nitrogen balance and has no negative effects on rumen microbes. This indicates that E-UCOPF 2.5% may be utilized as an alternate roughage source in TMR diets, accounting for at least 40% of the OPF. However, several factors still require consideration for urea-Ca(OH)2 treatments to be successful, including other concentrations of urea, moisture content, duration of pre-treatment, and the metabolizable protein system.
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Kutawa AB, Ahmad K, Ali A, Hussein MZ, Abdul Wahab MA, Adamu A, Ismaila AA, Gunasena MT, Rahman MZ, Hossain MI. Trends in Nanotechnology and Its Potentialities to Control Plant Pathogenic Fungi: A Review. BIOLOGY 2021; 10:881. [PMID: 34571758 PMCID: PMC8465907 DOI: 10.3390/biology10090881] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 07/26/2021] [Accepted: 07/28/2021] [Indexed: 12/16/2022]
Abstract
Approximately 15-18% of crops losses occur as a result of animal pests, while weeds and microbial diseases cause 34 and 16% losses, respectively. Fungal pathogens cause about 70-80% losses in yield. The present strategies for plant disease control depend transcendently on agrochemicals that cause negative effects on the environment and humans. Nanotechnology can help by reducing the negative impact of the fungicides, such as enhancing the solubility of low water-soluble fungicides, increasing the shelf-life, and reducing toxicity, in a sustainable and eco-friendly manner. Despite many advantages of the utilization of nanoparticles, very few nanoparticle-based products have so far been produced in commercial quantities for agricultural purposes. The shortage of commercial uses may be associated with many factors, for example, a lack of pest crop host systems usage and the insufficient number of field trials. In some areas, nanotechnology has been advanced, and the best way to be in touch with the advances in nanotechnology in agriculture is to understand the major aspect of the research and to address the scientific gaps in order to facilitate the development which can provide a rationale of different nanoproducts in commercial quantity. In this review, we, therefore, described the properties and synthesis of nanoparticles, their utilization for plant pathogenic fungal disease control (either in the form of (a) nanoparticles alone, that act as a protectant or (b) in the form of a nanocarrier for different fungicides), nano-formulations of agro-nanofungicides, Zataria multiflora, and ginger essential oils to control plant pathogenic fungi, as well as the biosafety and limitations of the nanoparticles applications.
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Affiliation(s)
- Abdulaziz Bashir Kutawa
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Department of Biological Sciences, Faculty of Life Science, Federal University Dutsin-Ma, Dutsin-ma P.M.B 5001, Nigeria
| | - Khairulmazmi Ahmad
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Sustainable Agronomy and Crop Protection, Institute of Plantation Studies (IKP), Universiti Putra Malaysia, Serdang 43400, Malaysia
| | - Asgar Ali
- Centre of Excellence for Postharvest Biotechnology (CEPB), School of Biosciences, University of Nottingham Malaysia, Jalan Broga, Semenyih 43500, Malaysia
| | - Mohd Zobir Hussein
- Institute of Advanced Technology (ITMA), Universiti Putra Malaysia, Serdang 43400, Malaysia;
| | - Mohd Aswad Abdul Wahab
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
| | - Abdullahi Adamu
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Department of Biological Sciences, Faculty of Science, Sokoto State University, Birnin Kebbi Road, Sokoto P.M.B 2134, Nigeria
| | - Abubakar A. Ismaila
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Department of Integrated Science, School of Secondary Education (Science), Federal College of Education (Technical), Bichi P.M.B 3473, Nigeria
| | - Mahesh Tiran Gunasena
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Grain Legume and Oil Crop Research and Development Centre, Angunakolapelessa 82220, Sri Lanka
| | - Muhammad Ziaur Rahman
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
- Plant Pathology Division, Regional Agricultural Research Station (RARS), Bangladesh Agricultural Research Institute (BARI), Barishal 8211, Bangladesh
| | - Md Imam Hossain
- Department of Plant Protection, Faculty of Agriculture, Universiti Putra Malaysia, Serdang 43400, Malaysia; (M.A.A.W.); (A.A.); (A.A.I.); (M.T.G.); (M.Z.R.); (M.I.H.)
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Tareen AK, Sultan IN, Songprom K, Laemsak N, Sirisansaneeyakul S, Vanichsriratana W, Parakulsuksatid P. Two-step pretreatment of oil palm trunk for ethanol production by thermotolerent Saccharomyces cerevisiae SC90. BIORESOURCE TECHNOLOGY 2021; 320:124298. [PMID: 33129086 DOI: 10.1016/j.biortech.2020.124298] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/30/2020] [Revised: 10/15/2020] [Accepted: 10/17/2020] [Indexed: 06/11/2023]
Abstract
Oil palm (Elaeis guineensis) trunk chips were processed by steam explosion under different steam conditions, followed by alkaline extraction and fermentation to produce efficient lignocellulosic ethanol as sustainable alternative energy resource. The optimum condition of steam explosion was attained at 210°C for 4 min (α-cellulose: 58.83% and lignin: 27.12%). Taguchi 3 factor design [(sodium hydroxide concentration (NaOH), temperature and time)] was performed to optimize alkaline extraction. The optimum condition at 15% NaOH, 90°C for 60 min gave highest percentage α-cellulose: 87.14% and lowest percentage of lignin: 6.13%. Simultaneous saccharification and fermentation (SSF) involved 10% dry weight pretreated fibers, Celluclast 1.5L (15 FPU /gram substrate), Novozyme 188 (15 IU/gram substrate) and Saccharomyces cerevisiae SC90. The highest ethanol concentration (CP) produced during SSF was 44.25 g/L. Nonetheless, pre-hydrolysis simultaneous saccharification and fermentation gave 31.22 g/L (CP). All results suggested that optimized two step pretreatment produced efficient ethanol.
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Affiliation(s)
- Afrasiab Khan Tareen
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Imrana Niaz Sultan
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Kiettipong Songprom
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Nikhom Laemsak
- Department of Forest Product, Faculty of Forestry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Sarote Sirisansaneeyakul
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Wirat Vanichsriratana
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand
| | - Pramuk Parakulsuksatid
- Department of Biotechnology, Faculty of Agro-Industry, Kasetsart University, 50 Ngam Wong Wan Rd, Ladyaow, Chatuchak, Bangkok 10900, Thailand.
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Lee J, Marsh M, Martini S. Effect of storage time on physical properties of sonocrystallized all-purpose shortening. J Food Sci 2020; 85:3391-3399. [PMID: 32920877 DOI: 10.1111/1750-3841.15435] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2020] [Revised: 07/24/2020] [Accepted: 08/10/2020] [Indexed: 11/27/2022]
Abstract
The purpose of this study was to determine the effect of high-intensity ultrasound (HIU) on the physical properties of an all-purpose shortening and to evaluate how these properties changed during storage (48 hr; 4, 12, and 24 weeks) at 5 °C and 25 °C. Samples were crystallized at 30 °C for 60 min with and without the application of HIU (20 kHz; 3.2 mm-diameter tip, 168 µm amplitude, 10 s). After crystallization, physical properties, such as hardness, elasticity, melting behavior, and solid fat content (SFC), were measured. These properties were also measured during storage. The effect of HIU was significant in changing the SFC, hardness, G' and G'', melting enthalpy, and microstructure of the samples. After 60 min of crystallization, the sonicated samples had higher values of SFC, hardness, elasticity, and melting enthalpy than the ones obtained without sonication (P < 0.05). Changes in these physical properties were associated with the microstructure of the samples since sonication generated smaller, more uniformly sized crystals as well as increased the number of crystals. No differences were observed in the G' of the sonicated samples stored at 25 °C as a function of storage period. The G' of the nonsonicated samples increased until 12 weeks of storage and was maintained up to 24 weeks, suggesting that sonication speed up the formation of a stable crystalline network. Samples stored at 5 °C showed higher value in hardness, G' and G'', and SFC than the ones stored at 25 °C. PRACTICAL APPLICATION: High-intensity ultrasound (HIU) has been widely used as an additional tool to change the crystallization behavior in various lipids; however, the long-term storage effect of HIU has not been studied before. This research evaluates the effect of HIU on the physical properties of a palm-based shortening stored up to 24 weeks at two different temperatures (25 and 5 °C). The application of HIU may help increase the stability of lipid during storage.
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Affiliation(s)
- Juhee Lee
- Department of Nutrition, Dietetics, and Food Sciences, Utah State University, Logan, Utah
| | - Melissa Marsh
- Department of Nutrition, Dietetics, and Food Sciences, Utah State University, Logan, Utah
| | - Silvana Martini
- Department of Nutrition, Dietetics, and Food Sciences, Utah State University, Logan, Utah
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Maluin FN, Hussein MZ, Yusof NA, Idris AS, Daim LDJ, Sarian MN, Rajab NF, Ee Ling S, Rashid N, Fakurazi S. Cytoprotection, Genoprotection, and Dermal Exposure Assessment of Chitosan-Based Agronanofungicides. Pharmaceutics 2020; 12:E497. [PMID: 32486034 PMCID: PMC7356519 DOI: 10.3390/pharmaceutics12060497] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2020] [Revised: 04/20/2020] [Accepted: 04/22/2020] [Indexed: 11/17/2022] Open
Abstract
Health risks which result from exposure to pesticides have sparked awareness among researchers, triggering the idea of developing nanoencapsulation pesticides with the aim to enhance cytoprotection as well as genoprotection of the pesticides. In addition, nanocapsules of pesticides have slow release capability, high bioavailability, and site-specific delivery, which has attracted great interest from researchers. Hence, the objective of this work is to synthesize a nanoformulation of a fungicide of different sizes, namely, chitosan-hexaconazole nanoparticles (18 nm), chitosan-dazomet nanoparticles (7 nm), and chitosan-hexaconazole-dazomet nanoparticles (5 nm), which were then subjected to toxicological evaluations, including cytotoxicity, genotoxicity, cell death assay, and dermal irritation assays. Incubation of chitosan-based nanofungicides with V79-4 hamster lung cell did not reveal cytotoxicity or genotoxicity, potentially suggesting that encapsulation with chitosan reduces direct toxicity of the toxic fungicides. Meanwhile, pure fungicide revealed its high cytotoxic effect on V79-4 hamster lung cells. In addition, dermal exposure assessment on rabbits revealed that chitosan-hexaconazole nanoparticles are classified under corrosive subcategory 1C, while chitosan-dazomet nanoparticles are classified under corrosive subcategory 1B. Moreover, both chitosan-hexaconazole nanoparticles and chitosan-dazomet nanoparticles are classified as causing mild irritation.
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Affiliation(s)
- Farhatun Najat Maluin
- Institute of Advanced Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (F.N.M.); (M.Z.H.); (N.A.Y.)
| | - Mohd Zobir Hussein
- Institute of Advanced Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (F.N.M.); (M.Z.H.); (N.A.Y.)
| | - Nor Azah Yusof
- Institute of Advanced Technology, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia; (F.N.M.); (M.Z.H.); (N.A.Y.)
- Department of Chemistry, Faculty of Science, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
| | - Abu Seman Idris
- Malaysian Palm Oil Board (MPOB), 6, Persiaran Institusi, Bandar Baru Bangi, Kajang 43000, Selangor, Malaysia;
| | - Leona Daniela Jeffery Daim
- Sime Darby Technology Centre Sdn. Bhd., UPM-MTDC Technology Centre III, Lebuh Silikon, Universiti Putra Malaysia, 1st Floor, Block B, Serdang 43400, Selangor, Malaysia;
| | - Murni Nazira Sarian
- Institute of Systems Biology (INBIOSIS), Universiti Kebangsaan Malaysia, Bangi 43600 UKM, Selangor, Malaysia;
| | - Nor Fadilah Rajab
- Biomedical Science Programme, Center for Healthy Aging and Wellness, Faculty of Allied Health Sciences, Universiti Kebangsaan Malaysia, Kuala Lumpur 50300, Malaysia;
- Biocompatibility Laboratory, Centre for Research and Instrumentation Management (CRIM), Universiti Kebangsaan Malaysia, Bangi 43600 UKM, Selangor, Malaysia; (S.E.L.); (N.R.)
| | - Siew Ee Ling
- Biocompatibility Laboratory, Centre for Research and Instrumentation Management (CRIM), Universiti Kebangsaan Malaysia, Bangi 43600 UKM, Selangor, Malaysia; (S.E.L.); (N.R.)
| | - Noramiwati Rashid
- Biocompatibility Laboratory, Centre for Research and Instrumentation Management (CRIM), Universiti Kebangsaan Malaysia, Bangi 43600 UKM, Selangor, Malaysia; (S.E.L.); (N.R.)
| | - Sharida Fakurazi
- Department of Human Anatomy, Faculty of Medicine and Health Sciences, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia
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