Biomass Prediction of Heterogeneous Temperate Grasslands Using an SfM Approach Based on UAV Imaging

Precision estimation of winter wheat crop height and above-ground biomass using unmanned aerial vehicle imagery and oblique photoghraphy point cloud data

Introduction

Crop height and above-ground biomass (AGB) serve as crucial indicators for monitoring crop growth and estimating grain yield. Timely and accurate acquisition of wheat crop height and AGB data is paramount for guiding agricultural production. However, traditional data acquisition methods suffer from drawbacks such as time-consuming, laborious and destructive sampling.

Methods

The current approach to estimating AGB using unmanned aerial vehicles (UAVs) remote sensing relies solely on spectral data, resulting in low accuracy in estimation. This method fails to address the ill-posed inverse problem of mapping from two-dimensional to three-dimensional and issues related to spectral saturation. To overcome these challenges, RGB and multispectral sensors mounted on UAVs were employed to acquire spectral image data. The five-directional oblique photography technique was utilized to construct the three-dimensional point cloud for extracting crop height.

Results and Discussion

This study comparatively analyzed the potential of the mean method and the Accumulated Incremental Height (AIH) method in crop height extraction. Utilizing Vegetation Indices (VIs), AIH and their feature combinations, models including Random Forest Regression (RFR), eXtreme Gradient Boosting (XGBoost), Gradient Boosting Regression Trees (GBRT), Support Vector Regression (SVR) and Ridge Regression (RR) were constructed to estimate winter wheat AGB. The research results indicated that the AIH method performed well in crop height extraction, with minimal differences between 95% AIH and measured crop height values were observed across various growth stages of wheat, yielding R2 ranging from 0.768 to 0.784. Compared to individual features, the combination of multiple features significantly improved the model's estimate accuracy. The incorporation of AIH features helps alleviate the effects of spectral saturation. Coupling VIs with AIH features, the model's R2 increases from 0.694-0.885 with only VIs features to 0.728-0.925. In comparing the performance of five machine learning algorithms, it was discovered that models constructed based on decision trees were superior to other machine learning algorithms. Among them, the RFR algorithm performed optimally, with R2 ranging from 0.9 to 0.93.

Conclusion

In conclusion, leveraging multi-source remote sensing data from UAVs with machine learning algorithms overcomes the limitations of traditional crop monitoring methods, offering a technological reference for precision agriculture management and decision-making.

Enhancing Building Point Cloud Reconstruction from RGB UAV Data with Machine-Learning-Based Image Translation

The performance of three-dimensional (3D) point cloud reconstruction is affected by dynamic features such as vegetation. Vegetation can be detected by near-infrared (NIR)-based indices; however, the sensors providing multispectral data are resource intensive. To address this issue, this study proposes a two-stage framework to firstly improve the performance of the 3D point cloud generation of buildings with a two-view SfM algorithm, and secondly, reduce noise caused by vegetation. The proposed framework can also overcome the lack of near-infrared data when identifying vegetation areas for reducing interferences in the SfM process. The first stage includes cross-sensor training, model selection and the evaluation of image-to-image RGB to color infrared (CIR) translation with Generative Adversarial Networks (GANs). The second stage includes feature detection with multiple feature detector operators, feature removal with respect to the NDVI-based vegetation classification, masking, matching, pose estimation and triangulation to generate sparse 3D point clouds. The materials utilized in both stages are a publicly available RGB-NIR dataset, and satellite and UAV imagery. The experimental results indicate that the cross-sensor and category-wise validation achieves an accuracy of 0.9466 and 0.9024, with a kappa coefficient of 0.8932 and 0.9110, respectively. The histogram-based evaluation demonstrates that the predicted NIR band is consistent with the original NIR data of the satellite test dataset. Finally, the test on the UAV RGB and artificially generated NIR with a segmentation-driven two-view SfM proves that the proposed framework can effectively translate RGB to CIR for NDVI calculation. Further, the artificially generated NDVI is able to segment and classify vegetation. As a result, the generated point cloud is less noisy, and the 3D model is enhanced.

Estimation of aboveground biomass of senescence grassland in China's arid region using multi-source data

Aboveground Biomass (AGB) in the grassland senescence period is a key indicator for assessing grassland fire risk and autumnal pasture carrying capacity. Despite the advancement of remote sensing in rapid monitoring of AGB on a regional scale, accurately monitoring AGB during the senescence period in vast arid areas remains a major challenge. Using remote sensing, environmental data, and 356 samples of grassland senescence period AGB data, this study utilizes the Gram-Schmidt Pan Sharpening (GS) method, multivariate selection methods, and machine learning algorithms (RF, SVM, and BP_ANN) to construct a model for AGB during senescence grassland, and applies the optimal model to analyze spatio-temporal pattern changes in AGB from 2000 to 2021 in arid regions. The results indicate that the GS method effectively enhances the correlation between measured AGB and vegetation indices, reducing model error to some extent; The accuracy of grassland AGB inversion models based on a single vegetation index is low (0.03 ≤ |R| ≤ 0.63), while the RF model constructed with multiple variables selected by the Boruta algorithm is the optimal model for estimating AGB in arid regions during the senescence period (R2 = 0.71, RMSE = 519.74 kg/ha); In the span of 22 years, the annual average AGB in the senescence period of arid regions was 1413.85 kg/ha, with regions of higher AGB primarily located in the northeast and southwest of the study area. The area experiencing an increase in AGB during the senescence period (79.97 %) was significantly larger than that with decreased AGB (20.03 %).

Herbage Mass, N Concentration, and N Uptake of Temperate Grasslands Can Adequately Be Estimated from UAV-Based Image Data Using Machine Learning

Precise and timely information on biomass yield and nitrogen uptake in intensively managed grasslands are essential for sustainable management decisions. Imaging sensors mounted on unmanned aerial vehicles (UAVs) along with photogrammetric structure-from-motion processing can provide timely data on crop traits rapidly and non-destructively with a high spatial resolution. The aim of this multi-temporal field study is to estimate aboveground dry matter yield (DMY), nitrogen concentration (N%) and uptake (Nup) of temperate grasslands from UAV-based image data using machine learning (ML) algorithms. The study is based on a two-year dataset from an experimental grassland trial. The experimental setup regarding climate conditions, N fertilizer treatments and slope yielded substantial variations in the dataset, covering a considerable amount of naturally occurring differences in the biomass and N status of grasslands in temperate regions with similar management strategies. Linear regression models and three ML algorithms, namely, random forest (RF), support vector machine (SVM), and partial least squares (PLS) regression were compared with and without a combination of both structural (sward height; SH) and spectral (vegetation indices and single bands) features. Prediction accuracy was quantified using a 10-fold 5-repeat cross-validation (CV) procedure. The results show a significant improvement of prediction accuracy when all structural and spectral features are combined, regardless of the algorithm. The PLS models were outperformed by their respective RF and SVM counterparts. At best, DMY was predicted with a median RMSECV of 197 kg ha−1, N% with a median RMSECV of 0.32%, and Nup with a median RMSECV of 7 kg ha−1. Furthermore, computationally less expensive models incorporating, e.g., only the single multispectral camera bands and SH metrics, or selected features based on variable importance achieved comparable results to the overall best models.

Review of Remote Sensing Applications in Grassland Monitoring

The application of remote sensing technology in grassland monitoring and management has been ongoing for decades. Compared with traditional ground measurements, remote sensing technology has the overall advantage of convenience, efficiency, and cost effectiveness, especially over large areas. This paper provides a comprehensive review of the latest remote sensing estimation methods for some critical grassland parameters, including above-ground biomass, primary productivity, fractional vegetation cover, and leaf area index. Then, the applications of remote sensing monitoring are also reviewed from the perspective of their use of these parameters and other remote sensing data. In detail, grassland degradation and grassland use monitoring are evaluated. In addition, disaster monitoring and carbon cycle monitoring are also included. Overall, most studies have used empirical models and statistical regression models, while the number of machine learning approaches has an increasing trend. In addition, some specialized methods, such as the light use efficiency approaches for primary productivity and the mixed pixel decomposition methods for vegetation coverage, have been widely used and improved. However, all the above methods have certain limitations. For future work, it is recommended that most applications should adopt the advanced estimation methods rather than simple statistical regression models. In particular, the potential of deep learning in processing high-dimensional data and fitting non-linear relationships should be further explored. Meanwhile, it is also important to explore the potential of some new vegetation indices based on the spectral characteristics of the specific grassland under study. Finally, the fusion of multi-source images should also be considered to address the deficiencies in information and resolution of remote sensing images acquired by a single sensor or satellite.

Multisite and Multitemporal Grassland Yield Estimation Using UAV-Borne Hyperspectral Data

Grassland ecosystems can be hotspots of biodiversity and act as carbon sinks while at the same time providing the basis of forage production for ruminants in dairy and meat production. Annual grassland dry matter yield (DMY) is one of the most important agronomic parameters reflecting differences in usage intensity such as number of harvests and fertilization. Current methods for grassland DMY estimation are labor-intensive and prone to error due to small sample size. With the advent of unmanned aerial vehicles (UAVs) and miniaturized hyperspectral sensors, a novel tool for remote sensing of grassland with high spatial, temporal and radiometric resolution and coverage is available. The present study aimed at developing a robust model capable of estimating grassland biomass across a gradient of usage intensity throughout one growing season. Therefore, UAV-borne hyperspectral data from eight grassland sites in North Hesse, Germany, originating from different harvests, were utilized for the modeling of fresh matter yield (FMY) and DMY. Four machine learning (ML) algorithms were compared for their modeling performance. Among them, the rule-based ML method Cubist regression (CBR) performed best, delivering high prediction accuracies for both FMY (nRMSEp 7.6%, Rp2 0.87) and DMY (nRMSEp 12.9%, Rp2 0.75). The model showed a high robustness across sites and harvest dates. The best models were employed to produce maps for FMY and DMY, enabling the detailed analysis of spatial patterns. Although the complexity of the approach still restricts its practical application in agricultural management, the current study proved that biomass of grassland sites being subject to different management intensities can be modeled from UAV-borne hyperspectral data at high spatial resolution with high prediction accuracies.

Remote Sensing in Studies of the Growing Season: A Bibliometric Analysis

Analyses of climate change based on point observations indicate an extension of the plant growing season, which may have an impact on plant production and functioning of natural ecosystems. Analyses involving remote sensing methods, which have added more detail to results obtained in the traditional way, have been carried out only since the 1980s. The paper presents the results of a bibliometric analysis of papers related to the growing season published from 2000–2021 included in the Web of Science database. Through filtering, 285 publications were selected and subjected to statistical processing and analysis of their content. This resulted in the identification of author teams that mostly focused their research on vegetation growth and in the selection of the most common keywords describing the beginning, end, and duration of the growing season. It was found that most studies on the growing season were reported from Asia, Europe, and North America (i.e., 32%, 28%, and 28%, respectively). The analyzed articles show the advantage of satellite data over low-altitude and ground-based data in providing information on plant vegetation. Over three quarters of the analyzed publications focused on natural plant communities. In the case of crops, wheat and rice were the most frequently studied plants (i.e., they were analyzed in over 30% and over 20% of publications, respectively).

Global application of an unoccupied aerial vehicle photogrammetry protocol for predicting aboveground biomass in non-forest ecosystems

Non-forest ecosystems, dominated by shrubs, grasses and herbaceous plants, provide ecosystem services including carbon sequestration and forage for grazing, and are highly sensitive to climatic changes. Yet these ecosystems are poorly represented in remotely sensed biomass products and are undersampled by in situ monitoring. Current global change threats emphasize the need for new tools to capture biomass change in non-forest ecosystems at appropriate scales. Here we developed and deployed a new protocol for photogrammetric height using unoccupied aerial vehicle (UAV) images to test its capability for delivering standardized measurements of biomass across a globally distributed field experiment. We assessed whether canopy height inferred from UAV photogrammetry allows the prediction of aboveground biomass (AGB) across low-stature plant species by conducting 38 photogrammetric surveys over 741 harvested plots to sample 50 species. We found mean canopy height was strongly predictive of AGB across species, with a median adjusted R ² of 0.87 (ranging from 0.46 to 0.99) and median prediction error from leave-one-out cross-validation of 3.9%. Biomass per-unit-of-height was similar within but different among, plant functional types. We found that photogrammetric reconstructions of canopy height were sensitive to wind speed but not sun elevation during surveys. We demonstrated that our photogrammetric approach produced generalizable measurements across growth forms and environmental settings and yielded accuracies as good as those obtained from in situ approaches. We demonstrate that using a standardized approach for UAV photogrammetry can deliver accurate AGB estimates across a wide range of dynamic and heterogeneous ecosystems. Many academic and land management institutions have the technical capacity to deploy these approaches over extents of 1-10 ha^-1. Photogrammetric approaches could provide much-needed information required to calibrate and validate the vegetation models and satellite-derived biomass products that are essential to understand vulnerable and understudied non-forested ecosystems around the globe.

Automatic Identification and Monitoring of Plant Diseases Using Unmanned Aerial Vehicles: A Review

Disease diagnosis is one of the major tasks for increasing food production in agriculture. Although precision agriculture (PA) takes less time and provides a more precise application of agricultural activities, the detection of disease using an Unmanned Aerial System (UAS) is a challenging task. Several Unmanned Aerial Vehicles (UAVs) and sensors have been used for this purpose. The UAVs’ platforms and their peripherals have their own limitations in accurately diagnosing plant diseases. Several types of image processing software are available for vignetting and orthorectification. The training and validation of datasets are important characteristics of data analysis. Currently, different algorithms and architectures of machine learning models are used to classify and detect plant diseases. These models help in image segmentation and feature extractions to interpret results. Researchers also use the values of vegetative indices, such as Normalized Difference Vegetative Index (NDVI), Crop Water Stress Index (CWSI), etc., acquired from different multispectral and hyperspectral sensors to fit into the statistical models to deliver results. There are still various drifts in the automatic detection of plant diseases as imaging sensors are limited by their own spectral bandwidth, resolution, background noise of the image, etc. The future of crop health monitoring using UAVs should include a gimble consisting of multiple sensors, large datasets for training and validation, the development of site-specific irradiance systems, and so on. This review briefly highlights the advantages of automatic detection of plant diseases to the growers.

The Application of an Unmanned Aerial System and Machine Learning Techniques for Red Clover-Grass Mixture Yield Estimation under Variety Performance Trials

A significant trend has developed with the recent growing interest in the estimation of aboveground biomass of vegetation in legume-supported systems in perennial or semi-natural grasslands to meet the demands of sustainable and precise agriculture. Unmanned aerial systems (UAS) are a powerful tool when it comes to supporting farm-scale phenotyping trials. In this study, we explored the variation of the red clover-grass mixture dry matter (DM) yields between temporal periods (one- and two-year cultivated), farming operations [soil tillage methods (STM), cultivation methods (CM), manure application (MA)] using three machine learning (ML) techniques [random forest regression (RFR), support vector regression (SVR), and artificial neural network (ANN)] and six multispectral vegetation indices (VIs) to predict DM yields. The ML evaluation results showed the best performance for ANN in the 11-day before harvest category (R2 = 0.90, NRMSE = 0.12), followed by RFR (R2 = 0.90 NRMSE = 0.15), and SVR (R2 = 0.86, NRMSE = 0.16), which was furthermore supported by the leave-one-out cross-validation pre-analysis. In terms of VI performance, green normalized difference vegetation index (GNDVI), green difference vegetation index (GDVI), as well as modified simple ratio (MSR) performed better as predictors in ANN and RFR. However, the prediction ability of models was being influenced by farming operations. The stratified sampling, based on STM, had a better model performance than CM and MA. It is proposed that drone data collection was suggested to be optimum in this study, closer to the harvest date, but not later than the ageing stage.

Estimation of forage biomass and vegetation cover in grasslands using UAV imagery

Grasslands are among the most widespread ecosystems on Earth and among the most degraded. Their characterization and monitoring are generally based on field measurements, which are incomplete spatially and temporally. The recent advent of unmanned aerial vehicles (UAV) provides data at unprecedented spatial and temporal resolutions. This study aims to test and compare three approaches based on multispectral imagery acquired by UAV to estimate forage biomass or vegetation cover in grasslands. The study site is composed of 30 pasture plots (25 × 50 m), 5 bare soil plots (25 x 50), and 6 control plots (5 × 5 m) on a 14-ha field maintained at various biomass levels by grazing rotations and clipping over a complete growing season. A total of 14 flights were performed. A first approach based on structure from motion was used to generate a volumetric-based biomass estimation model (R2 of 0.93 and 0.94 for fresh biomass [FM] and dry biomass [DM], respectively). This approach is not very sensitive to low vegetation levels but is accurate for FM estimation greater than 0.5 kg/m2 (0.1 kg DM/m2). The Green Normalized Difference Vegetation Index (GNDVI) was selected to develop two additional approaches. One is based on a regression biomass prediction model (R2 of 0.80 and 0.66 for FM and DM, respectively) and leads to an accurate estimation at levels of FM lower than 3 kg/m2 (0.6 kg DM/m2). The other approach is based on a classification of vegetation cover from clustering of GNDVI values in four classes. This approach is more qualitative than the other ones but more robust and generalizable. These three approaches are relatively simple to use and applicable in an operational context. They are also complementary and can be adapted to specific applications in grassland characterization.

Estimating Plant Pasture Biomass and Quality from UAV Imaging across Queensland’s Rangelands

The aim of this research was to test recent developments in the use of Remotely Piloted Aircraft Systems or Unmanned Aerial Vehicles (UAV)/drones to map both pasture quantity as biomass yield and pasture quality as the proportions of key pasture nutrients, across a selected range of field sites throughout the rangelands of Queensland. Improved pasture management begins with an understanding of the state of the resource base, UAV based methods can potentially achieve this at improved spatial and temporal scales. This study developed machine learning based predictive models of both pasture measures. UAV-based structure from motion photogrammetry provided a measure of yield from overlapping high resolution visible colour imagery. Pasture nutrient composition was estimated from the spectral signatures of visible near infrared hyperspectral UAV sensing. An automated pasture height surface modelling technique was developed, tested and used along with field site measurements to predict further estimates across each field site. Both prior knowledge and automated predictive modelling techniques were employed to predict yield and nutrition. Pasture height surface modelling was assessed against field measurements using a rising plate meter, results reported correlation coefficients (R2) ranging from 0.2 to 0.4 for both woodland and grassland field sites. Accuracy of the predictive modelling was determined from further field measurements of yield and on average indicated an error of 0.8 t ha−1 in grasslands and 1.3 t ha−1 in mixed woodlands across both modelling approaches. Correlation analyses between measures of pasture quality, acid detergent fibre and crude protein (ADF, CP), and spectral reflectance data indicated the visible red (651 nm) and red-edge (759 nm) regions were highly correlated (ADF R2 = 0.9 and CP R2 = 0.5 mean values). These findings agreed with previous studies linking specific absorption features with grass chemical composition. These results conclude that the practical application of such techniques, to efficiently and accurately map pasture yield and quality, is possible at the field site scale; however, further research is needed, in particular further field sampling of both yield and nutrient elements across such a diverse landscape, with the potential to scale up to a satellite platform for broader scale monitoring.

Comparison of Spectral Reflectance-Based Smart Farming Tools and a Conventional Approach to Determine Herbage Mass and Grass Quality on Farm

The analysis of multispectral imagery (MSI) acquired by unmanned aerial vehicles (UAVs) and mobile near-infrared reflectance spectroscopy (NIRS) used on-site has become increasingly promising for timely assessments of grassland to support farm management. However, a major challenge of these methods is their calibration, given the large spatiotemporal variability of grassland. This study evaluated the performance of two smart farming tools in determining fresh herbage mass and grass quality (dry matter, crude protein, and structural carbohydrates): an analysis model for MSI (GrassQ) and a portable on-site NIRS (HarvestLabTM 3000). We compared them to conventional look-up tables used by farmers. Surveys were undertaken on 18 multi-species grasslands located on six farms in Switzerland throughout the vegetation period in 2018. The sampled plots represented two phenological growth stages, corresponding to an age of two weeks and four to six weeks, respectively. We found that neither the performance of the smart farming tools nor the performance of the conventional approach were satisfactory for use on multi-species grasslands. The MSI-model performed poorly, with relative errors of 99.7% and 33.2% of the laboratory analyses for herbage mass and crude protein, respectively. The errors of the MSI-model were indicated to be mainly caused by grassland and environmental characteristics that differ from the relatively narrow Irish calibration dataset. The On-site NIRS showed comparable performance to the conventional Look-up Tables in determining crude protein and structural carbohydrates (error ≤ 22.2%). However, we identified that the On-site NIRS determined undried herbage quality with a systematic and correctable error. After corrections, its performance was better than the conventional approach, indicating a great potential of the On-site NIRS for decision support on grazing and harvest scheduling.

Growth Indicators of Main Species Predict Aboveground Biomass of Population and Community on a Typical Steppe

The objective was to explore a fast, accurate, non-destructive, and less disturbance method for predicting the aboveground biomass (AGB) of the typical steppe, by using plant height and canopy diameter of the dominant species, Stipa bungeana, Artemisia capillaris, and Lespedeza davurica, data were observed from 165 quadrats during the peak plant growing season, and the product of plant height (PH) and canopy diameter (PC) were calculated for each species. AGB of population were predicted for the same species and other species through using 2/3 of the measured data, and the optimal predictive equation was linear in terms of determination coefficient. The other 1/3 of the data, which was measured from no grazing paddocks or rotational grazing paddocks, was substituted into the predictive equations for validation. Results showed that PC of one dominant species could be used to predict AGB of the same species or other species well. The predicted and measured values were significantly correlative, and most of the predictive accuracy was above 80%, and not affected by managements of grassland, including rotational grazing or no grazing. A combination of 3 to 6 representative species was used to predict AGB of the community, and the predictive equations with PC of six species as an independent variable were the most optimal because explaining 83.5% variation of AGB. The predictive methods cost 1/15, 1/9, and 1/51 of time, labor, and capital as much as the destructive sample method (quadrat sampling method), respectively, and thus improved the efficiency of field study and protecting the fragile study areas, especially the long-term study sites in grassland.

Vegetation traits of pre-Alpine grasslands in southern Germany

The data set contains information on aboveground vegetation traits of > 100 georeferenced locations within ten temperate pre-Alpine grassland plots in southern Germany. The grasslands were sampled in April 2018 for the following traits: bulk canopy height; weight of fresh and dry biomass; dry weight percentage of the plant functional types (PFT) non-green vegetation, legumes, non-leguminous forbs, and graminoids; total green area index (GAI) and PFT-specific GAI; plant water content; plant carbon and nitrogen content (community values and PFT-specific values); as well as leaf mass per area (LMA) of PFT. In addition, a species specific inventory of the plots was conducted in June 2020 and provides plot-level information on grassland type and plant species composition. The data set was obtained within the framework of the SUSALPS project ("Sustainable use of alpine and pre-alpine grassland soils in a changing climate"; https://www.susalps.de/ ) to provide in-situ data for the calibration and validation of remote sensing based models to estimate grassland traits.

Unmanned aerial vehicles for biodiversity-friendly agricultural landscapes - A systematic review

The development of biodiversity-friendly agricultural landscapes is of major importance to meet the sustainable development challenges of our time. The emergence of unmanned aerial vehicles (UAVs), i.e. drones, has opened a new set of research and management opportunities to achieve this goal. On the one hand, this review summarizes UAV applications in agricultural landscapes, focusing on biodiversity conservation and agricultural land monitoring, based on a systematic review of the literature that resulted in 550 studies. Additionally, the review proposes how to integrate UAV research in these fields and point to new potential applications that may contribute to biodiversity-friendly agricultural landscapes. UAV-based imagery can be used to identify and monitor plants, floral resources and animals, facilitating the detection of quality habitats with high prediction power. Through vegetation indices derived from their sensors, UAVs can estimate biomass, monitor crop plant health and stress, detect pest or pathogen infestations, monitor soil fertility and target patches of high weed or invasive plant pressure, allowing precise management practices and reduced agrochemical input. Thereby, UAVs are helping to design biodiversity-friendly agricultural landscapes and to mitigate yield-biodiversity trade-offs. In conclusion, UAV applications have become a major means of biodiversity conservation and biodiversity-friendly management in agriculture, while latest developments, such as the miniaturization and decreasing costs of hyperspectral sensors, promise many new applications for the future.

The potential of UAV-borne spectral and textural information for predicting aboveground biomass and N fixation in legume-grass mixtures

Organic farmers, who rely on legumes as an external nitrogen (N) source, need a fast and easy on-the-go measurement technique to determine harvestable biomass and the amount of fixed N (NFix) for numerous farm management decisions. Especially clover- and lucerne-grass mixtures play an important role in the organic crop rotation under temperate European climate conditions. Multispectral sensors mounted on unmanned aerial vehicles (UAVs) are new promising tools for a non-destructive assessment of crop and grassland traits on large and remote areas. One disadvantage of multispectral information and derived vegetations indices is, that both ignore spatial relationships of pixels to each other in the image. This gap can be filled by texture features from a grey level co-occurrence matrix. The aim of this multi-temporal field study was to provide aboveground biomass and NFix estimation models for two legume-grass mixtures through a whole vegetation period based on UAV multispectral information. The prediction models covered different proportions of legumes (0-100% legumes) to represent the variable conditions in practical farming. Furthermore, the study compared prediction models with and without the inclusion of texture features. As multispectral data usually suffers from multicollinearity, two machine learning algorithms, Partial Least Square and Random Forest (RF) regression, were used. The results showed, that biomass prediction accuracy for the whole dataset as well as for crop-specific models were substantially improved by the inclusion of texture features. The best model was generated for the whole dataset by RF with an rRMSE of 10%. For NFix prediction accuracy of the best model was based on RF including texture (rRMSEP = 18%), which was not consistent with crop specific models.

The Fusion of Spectral and Structural Datasets Derived from an Airborne Multispectral Sensor for Estimation of Pasture Dry Matter Yield at Paddock Scale with Time

This study aimed to develop empirical pasture dry matter (DM) yield prediction models using an unmanned aerial vehicle (UAV)-borne sensor at four flying altitudes. Three empirical models were developed using features generated from the multispectral sensor: Structure from Motion only (SfM), vegetation indices only (VI), and in combination (SfM+VI) within a machine learning modelling framework. Four flying altitudes were tested (25 m, 50 m, 75 m and 100 m) and based on independent model validation, combining features from SfM+VI outperformed the other models at all heights. However, the importance of SfM-based features changed with altitude, with limited importance at 25 m but at all higher altitudes SfM-based features were included in the top 10 features in a variable importance plot. Based on the independent validation results, data generated at 25 m flying altitude reported the best model performances with model accuracy of 328 kg DM/ha. In contrast, at 100 m flying altitude, the model reported an accuracy of 402 kg DM/ha which demonstrates the potential of scaling up this technology at farm scale. The spatial-temporal maps provide valuable information on pasture DM yield and DM accumulation of herbage mass over the time, supporting on-farm management decisions.

Can Low-Cost Unmanned Aerial Systems Describe the Forage Quality Heterogeneity? Insight from a Timothy Pasture Case Study in Southern Belgium

Applied to grazing management, unmanned aerial systems (UASs) allow for the monitoring of vegetation at the level of each individual on the pasture while covering a significant area (>10 ha per flight). Few studies have investigated the use of UASs to describe the forage quality in terms of nutritive value or chemical composition, while these parameters are essential in supporting the productive functions of animals and are known to change in space (i.e., sward species and structure) and time (i.e., sward phenology). Despite interest, these parameters are scarcely assessed by practitioners as they usually require important laboratory analyses. In this context, our study investigates the potential of off-the-shelf UAS systems in modeling essential parameters of pasture productivity in a precision livestock context: sward height, biomass, and forage quality. In order to develop a solution which is easily reproducible for the research community, we chose to avoid expensive solutions such as UAS LiDAR (light detection and ranging) or hyperspectral sensors, as well as comparing several UAS acquisition strategies (sensors and view angles). Despite their low cost, all tested strategies provide accurate height, biomass, and forage quality estimates of timothy pastures. Considering globally the three groups of parameters, the UAS strategy using the DJI Phantom 4 pro (Nadir view angle) provides the most satisfactory results. The UAS survey using the DJI Phantom 4 pro (Nadir view angle) provided R2 values of 0.48, 0.72, and 0.7, respectively, for individual sward height measurements, mean sward height, and sward biomass. In terms of forage quality modeling, this UAS survey strategy provides R2 values ranging from 0.33 (Acid Detergent Lignin) to 0.85 (fodder units for dairy and beef cattle and fermentable organic matter). Even if their performances are of lower order than state-of-art techniques such as LiDAR for sward height or hyperspectral sensors (for biomass and forage quality modeling), the important trade-off in terms of costs between UAS LiDAR (>100,000 €) or hyperspectral sensors (>50,000 €) promotes the use of such low-cost UAS solutions. This is particularly true for sward height modeling and biomass monitoring, where our low-cost solutions provide more accurate results than state-of-the-art field approaches, such as rising plate meters, with a broader extent and a finer spatial grain.

A Systematic Review of the Factors Influencing the Estimation of Vegetation Aboveground Biomass Using Unmanned Aerial Systems

Interest in the use of unmanned aerial systems (UAS) to estimate the aboveground biomass (AGB) of vegetation in agricultural and non-agricultural settings is growing rapidly but there is no standardized methodology for planning, collecting and analyzing UAS data for this purpose. We synthesized 46 studies from the peer-reviewed literature to provide the first-ever review on the subject. Our analysis showed that spectral and structural data from UAS imagery can accurately estimate vegetation biomass in a variety of settings, especially when both data types are combined. Vegetation-height metrics are useful for trees, while metrics of variation in structure or volume are better for non-woody vegetation. Multispectral indices using NIR and red-edge wavelengths normally have strong relationships with AGB but RGB-based indices often outperform them in models. Including measures of image texture can improve model accuracy for vegetation with heterogeneous canopies. Vegetation growth structure and phenological stage strongly influence model accuracy and the selection of useful metrics and should be considered carefully. Additional factors related to the study environment, data collection and analytical approach also impact biomass estimation and need to be considered throughout the workflow. Our review shows that UASs provide a capable tool for fine-scale, spatially explicit estimations of vegetation AGB and are an ideal complement to existing ground- and satellite-based approaches. We recommend future studies aimed at emerging UAS technologies and at evaluating the effect of vegetation type and growth stages on AGB estimation.

Prediction of Biomass and N Fixation of Legume-Grass Mixtures Using Sensor Fusion

European farmers and especially organic farmers rely on legume-grass mixtures in their crop rotation as an organic nitrogen (N) source, as legumes can fix atmospheric N, which is the most important element for plant growth. Furthermore, legume-grass serves as valuable fodder for livestock and biogas plants. Therefore, information about aboveground biomass and N fixation (NFix) is crucial for efficient farm management decisions on the field level. Remote sensing, as a non-destructive and fast technique, provides different methods to quantify plant trait parameters. In our study, high-density point clouds, derived from terrestrial laser scanning (TLS), in combination with unmanned aerial vehicle-based multispectral (MS) data, were collected to receive information about three plant trait parameters (fresh and dry matter, nitrogen fixation) in two legume-grass mixtures. Several crop surface height metrics based on TLS and vegetation indices based on the four MS bands (green, red, red edge, and near-infrared) were calculated. Furthermore, eight texture features based on mean crop surface height and the four MS bands were generated to measure horizontal spatial heterogeneity. The aim of this multi-temporal study over two vegetation periods was to create estimation models based on biomass and N fixation for two legume-grass mixtures by sensor fusion, a combination of both sensors. To represent conditions in practical farming, e.g., the varying proportion of legumes, the experiment included pure stands of legume and grass of the mixtures. Sensor fusion of TLS and MS data was found to provide better estimates of biomass and N _Fix than separate data analysis. The study shows the important role of texture based on MS and point cloud data, which contributed greatly to the estimation model generation. The applied approach offers an interesting method for improvements in precision agriculture.

Predicting Forage Quality of Grasslands Using UAV-Borne Imaging Spectroscopy

The timely knowledge of forage quality of grasslands is vital for matching the demands in animal feeding. Remote sensing (RS) is a promising tool for estimating field-scale forage quality compared with traditional methods, which usually do not provide equally detailed information. However, the applicability of RS prediction models depends on the variability of the underlying calibration data, which can be brought about by the inclusion of a multitude of grassland types and management practices in the model development. Major aims of this study were (i) to build forage quality estimation models for multiple grassland types based on an unmanned aerial vehicle (UAV)-borne imaging spectroscopy and (ii) to generate forage quality distribution maps using the best models obtained. The study examined data from eight grasslands in northern Hesse, Germany, which largely differed in terms of vegetation type and cutting regime. The UAV with a hyperspectral camera on board was utilised to acquire spectral images from the grasslands, and crude protein (CP) and acid detergent fibre (ADF) concentration of the forage was assessed at each cut. Five predictive modelling regression algorithms were applied to develop quality estimation models. Further, grassland forage quality distribution maps were created using the best models developed. The normalised spectral reflectance data showed the strongest relationship with both CP and ADF concentration. From all predictive algorithms, support vector regression provided the highest precision and accuracy for CP estimation (median normalised root mean square error prediction (nRMSEp) = 10.6%), while cubist regression model proved best for ADF estimation (median nRMSEp = 13.4%). The maps generated for both CP and ADF showed a distinct spatial variation in forage quality values for the different grasslands and cutting regimes. Overall, the results disclose that UAV-borne imaging spectroscopy, in combination with predictive modelling, provides a promising tool for accurate forage quality estimation of multiple grasslands.

Development and Validation of a Model to Combine NDVI and Plant Height for High-Throughput Phenotyping of Herbage Yield in a Perennial Ryegrass Breeding Program

Sensor-based phenotyping technologies may offer a non-destructive, high-throughput and efficient assessment of herbage yield (HY) to replace current inefficient phenotyping methods. This paper assesses the feasibility of combining normalised difference vegetative index (NDVI) from multispectral imaging and ultrasonic sonar estimates of plant height to estimate HY of single plants in a large perennial ryegrass breeding program. For sensor calibration, fresh HY (FHY) and dry HY (DHY) were acquired destructively, and plant height was measured at four dates each in 2017 and 2018 from a selected subset of 480 plants. Global multiple linear regression models based on K-fold and random split cross-validation methods were used to evaluate the relationship between observed vs. predicted HY. The coefficient of determination (R2) = 0.67–0.68 and a root mean square error (RMSE) between 5.43–7.60 g was obtained for the validation of predicted vs. observed DHY. The mean absolute error (MAE) and mean percentage error (MPE) ranged between 3.59–5.44 g and 22–28%, respectively. For the FHY, R2 values ranged from 0.63 to 0.70, with an RMSE between 23.50 and 33 g, MAE between 15.11 and 24.34 g and MPE between ~22% and 31%. Combining NDVI and plant height is a robust method to enable high-throughput phenotyping of herbage yield in perennial ryegrass breeding programs.

Unmanned Aircraft System (UAS) Technology and Applications in Agriculture

Numerous sensors have been developed over time for precision agriculture; though, only recently have these sensors been incorporated into the new realm of unmanned aircraft systems (UAS). This UAS technology has allowed for a more integrated and optimized approach to various farming tasks such as field mapping, plant stress detection, biomass estimation, weed management, inventory counting, and chemical spraying, among others. These systems can be highly specialized depending on the particular goals of the researcher or farmer, yet many aspects of UAS are similar. All systems require an underlying platform—or unmanned aerial vehicle (UAV)—and one or more peripherals and sensing equipment such as imaging devices (RGB, multispectral, hyperspectral, near infra-red, RGB depth), gripping tools, or spraying equipment. Along with these wide-ranging peripherals and sensing equipment comes a great deal of data processing. Common tools to aid in this processing include vegetation indices, point clouds, machine learning models, and statistical methods. With any emerging technology, there are also a few considerations that need to be analyzed like legal constraints, economic trade-offs, and ease of use. This review then concludes with a discussion on the pros and cons of this technology, along with a brief outlook into future areas of research regarding UAS technology in agriculture.

Can we Monitor Height of Native Grasslands in Uruguay with Earth Observation?

In countries where livestock production based on native grasslands is an important economic activity, information on structural characteristics of forage is essential to support national policies and decisions at the farm level. Remote sensing is a good option for quantifying large areas in a relative short time, with low cost and with the possibility of analyzing annual evolution. This work aims at contributing to improve grazing management, by evaluating the ability of remote sensing information to estimate forage height, as an estimator of available biomass. Field data (forage height) of 20 commercial paddocks under grazing conditions (322 samples), and their relation to MODIS data (FPAR, LAI, MIR, NIR, Red, NDVI and EVI) were analyzed. Correlations between remote sensing information and field measurements were low, probably due to the extremely large variability found within each paddock for field observations (CV: Around 75%) and much lower when considering satellite information (MODIS: CV: 4%–6% and Landsat:CV: 12%). Despite this, the red band showed some potential (with significant correlation coefficient values in 41% of the paddocks) and justifies further exploration. Additional work is needed to find a remote sensing method that can be used to monitor grasslands height.

Estimating Above-Ground Biomass of Maize Using Features Derived from UAV-Based RGB Imagery

The rapid, accurate, and economical estimation of crop above-ground biomass at the farm scale is crucial for precision agricultural management. The unmanned aerial vehicle (UAV) remote-sensing system has a great application potential with the ability to obtain remote-sensing imagery with high temporal-spatial resolution. To verify the application potential of consumer-grade UAV RGB imagery in estimating maize above-ground biomass, vegetation indices and plant height derived from UAV RGB imagery were adopted. To obtain a more accurate observation, plant height was directly derived from UAV RGB point clouds. To search the optimal estimation method, the estimation performances of the models based on vegetation indices alone, based on plant height alone, and based on both vegetation indices and plant height were compared. The results showed that plant height directly derived from UAV RGB point clouds had a high correlation with ground-truth data with an R2 value of 0.90 and an RMSE value of 0.12 m. The above-ground biomass exponential regression models based on plant height alone had higher correlations for both fresh and dry above-ground biomass with R2 values of 0.77 and 0.76, respectively, compared to the linear regression model (both R2 values were 0.59). The vegetation indices derived from UAV RGB imagery had great potential to estimate maize above-ground biomass with R2 values ranging from 0.63 to 0.73. When estimating the above-ground biomass of maize by using multivariable linear regression based on vegetation indices, a higher correlation was obtained with an R2 value of 0.82. There was no significant improvement of the estimation performance when plant height derived from UAV RGB imagery was added into the multivariable linear regression model based on vegetation indices. When estimating crop above-ground biomass based on UAV RGB remote-sensing system alone, looking for optimized vegetation indices and establishing estimation models with high performance based on advanced algorithms (e.g., machine learning technology) may be a better way.