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Song S, Xiao B, Hu J, Lin H, Du Z, Xiang K, Pan D, Hou X, Yuan J, Lai X, Sheng G. Ancient Mitogenomes Reveal Stable Genetic Continuity of the Holocene Serows. Genes (Basel) 2023; 14:1187. [PMID: 37372367 DOI: 10.3390/genes14061187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 05/24/2023] [Accepted: 05/26/2023] [Indexed: 06/29/2023] Open
Abstract
As one of the remaining species of Caprinae only found in Asia, serows (Capricornis) and their classification and conservation have received increasing attention in recent years. However, their evolutionary history and population dynamics are not yet clear. To shed light on these topics, we report the first near-complete ancient mitochondrial genomes from two serow sub-fossils (CADG839 and CADG946) dating to 8860 ± 30 years and 2450 ± 30 years, and incorporate the newly obtained mitogenomes into the dataset of living serows (18 complete mitochondrial genomes drawn from National Center for Biotechnology Information, NCBI) to investigate their relationships and evolution. Phylogenetic results support four clades of serows that can be further divided into five subclades, indicating higher genetic diversity than previously thought. Notably, our two ancient samples do not form a separate branch but belong to Capricornis sumatraensis clade A together with modern individuals, which suggests genetic continuity between ancient and modern serows. Furthermore, our results suggest that the maternal divergences of serows occurred at the beginning of the Pleistocene. Bayesian estimation indicates that the first divergence among all serows happened approximately 2.37 Ma (95% highest posterior density, HPD: 2.74-2.02 Ma) when Japanese serow (Capricornis crispus) appeared, while the last divergence occurred within the Sumatran serow (C. sumatraensis clade A and B) around 0.37-0.25 Ma. Additionally, we found the effective maternal population size of C. sumatraensis increased around 225-160 and 90-50 ka, then remained stable since 50 ka. Overall, our study provides new insights into serow phylogeny and evolutionary history.
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Affiliation(s)
- Shiwen Song
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Bo Xiao
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Jiaming Hu
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Haifeng Lin
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Zhicheng Du
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Kunpeng Xiang
- Guizhou Institute of Geological Survey, Guiyang 550081, China
| | - Dong Pan
- Palaeontological Fossil Conservation Center, Qinggang County, Suihua 151600, China
| | - Xindong Hou
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
| | - Junxia Yuan
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430078, China
| | - Xulong Lai
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
- School of Earth Science, China University of Geosciences, Wuhan 430074, China
| | - Guilian Sheng
- School of Environmental Studies, China University of Geosciences, Wuhan 430078, China
- State Key Laboratory of Biogeology and Environmental Geology, China University of Geosciences, Wuhan 430078, China
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Isarankura Na Ayudhya J, Merceron G, Wannaprasert T, Jaeger JJ, Chaimanee Y, Shoocongdej R, Suraprasit K. Dental mesowear and microwear for the dietary reconstruction of Quaternary Southeast Asian serows and gorals. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.1000168] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Serows and gorals (Bovidae, Caprinae) are emblematic antelopes distributed in Southeast Asia. They all are nearly threaten or vulnerable species nowadays despite having a more widespread distribution during the Pleistocene. Fossils of three native caprine species, i.e., a Sumatran serow Capricornis sumatraensis, Chinese goral Naemorhedus griseus, and Himalayan goral Naemorhedus goral, were recovered from four Pleistocene paleontological and archeological sites in Thailand, namely Pha Bong, Khok Sung, Tham Wiman Nakin, and Tham Lod Rockshelter. To investigate dietary changes of these Southeast Asian serows and gorals through the Quaternary, differences in feeding habits and habitat preferences between the Pleistocene and extant populations were examined using the hypsodonty index (HI) together with the mesowear II method and the dental microwear texture analysis (DMTA). The HI and mesowear-II results showed that Pleistocene and extant caprines were mixed feeders. For the Pleistocene caprine populations, the DMTA results suggested more browsing signals for C. sumatraensis than both Naemorhedus species that were mixed feeders similar to their extant populations. The DMTA demonstrated a considerable dietary overlap among the Pleistocene sympatric caprine populations. The dental microwear results also revealed that the extant C. sumatraensis is a leaf-dominant browser, while the extant N. griseus possibly feeds on seeds or tough food items. These data combined with previous stable carbon isotope analyses reinforce the idea that the restricted ranges of habitats for these extant serow and goral populations have possibly been driven by the Holocene climatic and environmental changes as well as the negative effects of human activities.
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McCann G, Pawlowski K, Thon S. The occurrence of Indochinese Serow Capricornis sumatraensis in Virachey National Park, northeastern Cambodia. JOURNAL OF THREATENED TAXA 2022. [DOI: 10.11609/jott.7761.14.6.21149-21154] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022] Open
Abstract
The Mainland Serow Capricornis sumatraensis is an under-studied, enigmatic rupicarin in the family Bovidae that lives in remote parts of the interior of Cambodia’s mountain ranges, most of which border neighboring countries. Their population status in Cambodia is unclear but thought to be in decline. Our records stem from steep forested areas and never in open meadows or clearings. Our fairly robust camera trap records, including direct observations, suggest that Virachey National Park in the northeastern corner of the country might be the species’ last best chance for survival in the wild in Cambodia.
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Viviano A, Amori G, Luiselli L, Oebel H, Bahleman F, Mori E. Blessing the rains down in Africa: spatiotemporal behaviour of the crested porcupine Hystrix cristata (Mammalia: Rodentia) in the rainy and dry seasons, in the African savannah. TROPICAL ZOOLOGY 2020. [DOI: 10.4081/tz.2020.80] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
Abstract
The assessment of habitat selection and temporal patterns of activity rhythms is paramount for wildlife conservation. Studies on behavioural ecology of wild mammals are particularly challenging in tropical areas, mostly when involving rare or elusive species. Despite being a common species in Italy, the crested porcupine Hystrix cristata is threatened of extinction throughout most of its sub-Saharan range. All available information on the ecology of this species has been collected in Italy, whereas no data is present in the scientific literature on spatiotemporal behaviour of this large rodent in Africa. In this work, we attempted to determine habitat selection and temporal patterns of activity rhythms of the crested porcupine in northern Benin and neighbouring countries, through intensive camera-trapping. We collected a total of 146 records of crested porcupine, 91 in the dry season (October-March) and 55 in the rainy season (April-September). Porcupines used most habitats in proportion to their local availability, while selecting rock outcrop formations (possibly used as shelter sites) and avoiding open areas, wetlands and gallery forests. A mostly nocturnal behaviour was confirmed throughout the year, with some diurnal activity at the start and at the end of the rainy season. The importance of rains in determining birth peak has been also showed, with juvenile individuals always observed at the start and at the end of the rainy season. Full moon always inhibited activity of this large rodent, most likely evolved as an antipredatory behaviour to limit encounters with potential predators (common leopard Panthera pardus, spotted hyaena Crocuta crocuta and honey badger Mellivora capensis) and humans. Poaching pressure towards porcupines in West Africa is strong. Porcupines are killed for the traditional medicine, for their meat and because they are widely considered as a crop pest. This assessment should therefore be used as a basic tool to design conservation plans to preserve this rodent species in its native range.
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