Effects of a Grain Source (Corn Versus Barley) and Starter Protein Content on Performance, Ruminal Fermentation, and Blood Metabolites in Holstein Dairy Calves

Inflammatory genes expression and calf responses to different dietary grains (steam flaked corn vs steam-rolled barley) and protein sources (pelleted soybean meal vs pelleted canola meal)

This study aimed to investigate the effects of grains, and protein sources in the starter diet on daily gain, pro- and anti-inflammatory genes expression, ruminal volatile fatty acid (VFA) concentration, and blood metabolites in the dairy calves. Forty Holstein calves were randomly assigned to treatments in a 2 × 2 factorial arrangement with the factors of grain source (steam-flaked corn, CG vs. steam-rolled barley, BG) and pelleted protein source (soybean meal, SBM vs. canola meal, CM). The daily gain of calves who fed with SBM was higher than those fed with CM. Total VFA concentration in the rumen of calves fed with CG was greater than BG at day 35 (p < 0.05), and calves receiving SBM had higher total VFA concentration than calves fed with CM. The relative expression of tumor necrosis factor-α and interleukin-1β genes were significantly decreased in the calves fed with BG and CM compared to calves fed with CG and SBM. Calves receiving the starter diet based on BG had the highest (p < 0.05) gene expression of interferon-γ. Feeding calves with SBM is recommended because it resulted in a greater daily gain than CM. Complete replacement of SBM with CM, and CG with BG is not recommended in dairy calves.

A reference-guided TILLING by amplicon-sequencing platform supports forward and reverse genetics in barley

Barley is a diploid species with a genome smaller than those of other members of the Triticeae tribe, making it an attractive model for genetic studies in Triticeae crops. The recent development of barley genomics has created a need for a high-throughput platform to identify genetically uniform mutants for gene function investigations. In this study, we report an ethyl methanesulfonate (EMS)-mutagenized population consisting of 8525 M₃ lines in the barley landrace "Hatiexi" (HTX), which we complement with a high-quality de novo assembly of a reference genome for this genotype. The mutation rate within the population ranged from 1.51 to 4.09 mutations per megabase, depending on the treatment dosage of EMS and the mutation discrimination platform used for genotype analysis. We implemented a three-dimensional DNA pooling strategy combined with multiplexed amplicon sequencing to create a highly efficient and cost-effective TILLING (targeting induced locus lesion in genomes) platform in barley. Mutations were successfully identified from 72 mixed amplicons within a DNA pool containing 64 individual mutants and from 56 mixed amplicons within a pool containing 144 individuals. We discovered abundant allelic mutants for dozens of genes, including the barley Green Revolution contributor gene Brassinosteroid insensitive 1 (BRI1). As a proof of concept, we rapidly determined the causal gene responsible for a chlorotic mutant by following the MutMap strategy, demonstrating the value of this resource to support forward and reverse genetic studies in barley.