Microsatellite-Based Genetic Characterization of the Indigenous Katjang Goat in Peninsular Malaysia

Genetic diversity, population structure and origin of the native goats in Central Laos

Maintaining genetic diversity and variation in livestock populations is critical for natural and artificial selection promoting genetic improvement while avoiding problems due to inbreeding. In Laos, there are concerns that there has been a decline in genetic diversity and a rise in inbreeding among native goats in their village-based smallholder system. In this study, we investigated the genetic diversity of Lao native goats in Phin, Songkhone and Sepon districts in Central Laos for the first time using Illumina's Goat SNP50 BeadChip. We also explored the genetic relationships between Lao goats with 163 global goat populations from 36 countries. Our results revealled a close genetic relationship between Lao native goats and Chinese, Mongolian and Pakistani goats, sharing ancestries with Guangfen, Jining Grey and Luoping Yellow breeds (China) and Teddi goats (Pakistan). The observed (Ho) and expected (He) heterozygosity were 0.292 and 0.303 (Laos), 0.288 and 0.288 (Sepon), 0.299 and 0.308 (Phin) and 0.289 and 0.305 (Songkhone), respectively. There was low to moderate genetic differentiation (FST: 0.011-0.043) and negligible inbreeding coefficients (FIS: -0.001 to 0.052) between goat districts. The runs of homozygosity (ROH) had an average length of 5.92-6.85 Mb, with short ROH segments (1-5 Mb length) being the most prevalent (66.34%). Longer ROH segments (20-40 and >40 Mb length categories) were less common, comprising only 4.81% and 1.01%, respectively. Lao goats exhibit moderate genetic diversity, low-inbreeding levels and adequate effective population size. Some genetic distinctions between Lao goats may be explained by geographic and cultural features.

Analysis of Genetic Diversity in Romanian Carpatina Goats Using SNP Genotyping Data

Animal husbandry is one of man's oldest occupations. It began with the domestication of animals and developed continuously, in parallel with the evolution of human society. The selection and improvement of goats in Romania was not a clearly defined objective until around 1980. In recent years, with the increasing economic value given to goats, breeding programs are becoming established. In Romania, a few goat genetic studies using microsatellites and mtDNA have been carried out; however, a systematic characterization of the country's goat genomic resources remains missing. In this study, we analyzed the genetic variability of Carpatina goats from four distinct geographical areas (northern, north-eastern, eastern and southern Romania), using the Illumina OvineSNP60 (RefSeq ARS1) high-density chip for 67 goats. Heterozygosity values, inbreeding coefficients and effective population size across all autosomes were calculated for those populations that inhabit high- and low-altitude and high- and low-temperature environments. Diversity, as measured by expected heterozygosity (HE), ranged from 0.413 in the group from a low-temperature environment to 0.420 in the group from a high-temperature environment. Within studied groups, the HT (high temperature) goats were the only group with a positive but low average inbreeding coefficient value, which was 0.009. After quality control (QC) analysis, 46,965 SNPs remained for analysis (MAF < 0.01). LD was calculated for each chromosome separately. The Ne has been declining since the time of domestication, having recently reached 123, 125, 185 and 92 for the HA (high altitude), LA (low altitude), HT (high temperature) and LT (low temperature) group, respectively. Our study revealed a low impact of inbreeding in the Carpatina population, and the Ne trend also indicated a steep decline in the last hundred years. These results will contribute to the genetic improvement of the Carpatina breed.

Physiological, haematological and electroencephalographic responses to heat stress in Katjang and Boer goats

The present study aimed to determine the effect of repeated heat stress on serum levels of cortisol (CORT), acute phase proteins (APP) and heat shock protein (HSP) 70, haematological indicators, and electroencephalographic (EEG) response in the native Katjang and exotic Boer goats. Six female Katjang (15.7 kg ± 0.68) and six female Boer (16.8 kg ± 1.16) goats aged 5 to 6 months old were exposed to 38 ± 1℃ for 8 h, and the procedure was repeated at three different weeks (weeks 1, 2 and 3). Measurements of rectal temperatures and EEG activity and collection of blood samples were conducted before heat exposure (0 h), immediately after the heat exposure (8 h), and 8 h after completion of heat exposure (16 h) (recovery period). The current results revealed that the Boer animals had significantly higher rectal temperatures (RT), haemoglobin (Hb) and packed cell volume (PCV) counts than their Kajang counterparts. There were significant breed × stage of heat treatment (SHT) × week of heat treatment (WHT) interactions for neutrophil to lymphocyte ratios (NLR). In general, the Katjang animals had elevated NLR compared to those of Boer. The Boer goats had reduced capacity to express serum HSP70 compared to their Katjang counterparts following the heat challenge at week 3. Boer goats demonstrated higher delta waves than the Katjang group, which suggested the former were more stressed following the heat exposure. Breed had a negligible effect on CORT, APP, WBC counts and backfat thickness. Our findings suggested that the Katjang breed, as measured by RT, HB and PCV count, and EEG activity, could be more tolerant to heat stress than Boer. The Katjang goats showed higher HSP70 expression than their Boer counterparts, suggesting improved thermoregulation in the former.

Genetic structure of reconstituted native Carpathian goat breed based on information from microsatellite markers

The aim of the study was to evaluate the genetic structure of the reconstituted native Carpathian goat breed based on information from microsatellite markers. The study analysed of 14 microsatellite markers recommended by the International Society for Animal Genetics (ISAG) for goats individual identification and parentage testing. Blood samples were taken from 249 Carpathian goats from 14 farms. All microsatellite markers deployed in this analysis showed sufficient polymorphism to assess genetic variation in Carpathian goats and the ISAG-recommended panel for goat individual identification and parentage testing is a highly useful one. The present study showed the status of the genetic structure of the reconstituted population of Carpathian goats. Carpathian goats maintained in Poland were characterized by relatively high genetic diversity (the average of alleles per locus was 9.143), high values of heterozygosity and a low level of inbreeding coefficient. The obtained parameters indicate the correctness of the breeding activities carried out within the framework of the programme for the protection of genetic resources and give guidelines for taking further steps related to the breeding of this valuable native breed.