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Gross MA, Holder AL, Moehlenpah AN, Freetly HC, Goad CL, Beck PA, DeVuyst EA, Lalman DL. Predicting feed intake in confined beef cows. Transl Anim Sci 2024; 8:txae001. [PMID: 38384374 PMCID: PMC10881093 DOI: 10.1093/tas/txae001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 01/03/2024] [Indexed: 02/23/2024] Open
Abstract
Six existing equations (three for nonlactating and three for lactating; NRC, 1987, Predicting feed intake of food-producing animals. Washington, DC: The National Academies Press, National Academy of Science; doi: 10.17226/950; NRC, 1996, Nutrient requirements of beef cattle, 7th Revised Edition: Update 1996. Washington, DC: The National Academies Press; doi: 10.17226/9791; Hibberd and Thrift, 1992. Supplementation of forage-based diets. J. Anim. Sci. 70:181. [Abstr]) were evaluated for predicting feed intake in beef cows. Each of the previously published equations are sensitive to cow-shrunk BW and feed energy concentration. Adjustments in feed intake prediction are provided for level of milk yield in NRC (1987. Predicting feed intake of food-producing animals. Washington, DC: The National Academies Press, National Academy of Science; doi: 10.17226/950) and NRC (1996 Nutrient requirements of beef cattle, 7th Revised Edition: Update 1996. Washington, DC: The National Academies Press; doi: 10.17226/9791) equations. The equation published in 1996 used data generated between 1979 and 1993. Our objectives were to validate the accuracy of the published equations using more recent data and to propose alternative prediction models. Criteria for inclusion in the evaluation dataset included projects conducted or published since 2002, direct measurement of feed intake, adequate protein supply, and pen feeding (no metabolism crate data). After removing outliers, the dataset included 53 treatment means for nonlactating cows and 32 treatment means for lactating cows. Means for the nonlactating dataset were dry matter intake (DMI) = 13.2 ± 2.9 kg/d, shrunk body weight (SBW) = 578 ± 83.9 kg, body condition score = 5.7 ± 0.73, and Mcal net energy for maintenance (NEm)/kg of feed = 1.27 ± 0.15 Mcal/kg. Means for the lactating dataset were DMI = 14.6 ± 2.24 kg/d, SBW = 503 ± 73.4 kg, body condition score = 4.7 ± 0.58, and Mcal NEm/kg feed = 1.22 ± 0.16. Simple linear regression was used to determine slope, intercept, and bias when observed DMI (y) was regressed against predicted DMI (x). The NRC (1996. Nutrient requirements of beef cattle, 7th Revised Edition: Update 1996. Washington, DC: The National Academies Press; doi: 10.17226/9791) nonlactating equation underestimated feed intake in diets moderate to high in energy density with intercept differing from 0 and slope differing from one (P ≤ 0.01). Average deviation from observed values was 2.4 kg/d. Similarly, when the NRC (1996. Nutrient requirements of beef cattle, 7th Revised Edition: Update 1996. Washington, DC: The National Academies Press; doi: 10.17226/9791) equation was used to predict DMI in lactating cows, the slope differed from one (P < 0.01) with average deviation from observed values of 3.0 kg/d. New models were developed by pooling the two datasets and including a categorical variable for stage of production (0 = nonlactating and 1 = lactating). Continuous variables included study-average SBW0.75 and diet NEm, Mcal/kg. The best-fit empirical model accounted for 68% of the variation in daily feed intake with standard error of the estimate Sy root mean squared error = 1.31. The proposed equation needs to be validated with independent data.
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Affiliation(s)
- Megan A Gross
- Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK 74078, USA
| | - Amanda L Holder
- Division of Agriculture and Natural Sciences, College of the Ozarks, Branson, MO 65726, USA
| | - Alexi N Moehlenpah
- Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK 74078, USA
| | - Harvey C Freetly
- USDA, ARS, U.S. Meat Animal Research Center, Clay Center, NE 68933, USA
| | - Carla L Goad
- Department of Statistics, Oklahoma State University, Stillwater, OK 74078, USA
| | - Paul A Beck
- Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK 74078, USA
| | - Eric A DeVuyst
- Department of Agricultural Economics, Oklahoma State University, Stillwater, OK 74078, USA
| | - David L Lalman
- Department of Animal and Food Sciences, Oklahoma State University, Stillwater, OK 74078, USA
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Hu Z, Boschiero C, Li CJ, Connor EE, Baldwin RL, Liu GE. Unraveling the Genetic Basis of Feed Efficiency in Cattle through Integrated DNA Methylation and CattleGTEx Analysis. Genes (Basel) 2023; 14:2121. [PMID: 38136943 PMCID: PMC10742843 DOI: 10.3390/genes14122121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2023] [Revised: 11/21/2023] [Accepted: 11/22/2023] [Indexed: 12/24/2023] Open
Abstract
Feed costs can amount to 75 percent of the total overhead cost of raising cows for milk production. Meanwhile, the livestock industry is considered a significant contributor to global climate change due to the production of greenhouse gas emissions, such as methane. Indeed, the genetic basis of feed efficiency (FE) is of great interest to the animal research community. Here, we explore the epigenetic basis of FE to provide base knowledge for the development of genomic tools to improve FE in cattle. The methylation level of 37,554 CpG sites was quantified using a mammalian methylation array (HorvathMammalMethylChip40) for 48 Holstein cows with extreme residual feed intake (RFI). We identified 421 CpG sites related to 287 genes that were associated with RFI, several of which were previously associated with feeding or digestion issues. Activator of transcription and developmental regulation (AUTS2) is associated with digestive disorders in humans, while glycerol-3-phosphate dehydrogenase 2 (GPD2) encodes a protein on the inner mitochondrial membrane, which can regulate glucose utilization and fatty acid and triglyceride synthesis. The extensive expression and co-expression of these genes across diverse tissues indicate the complex regulation of FE in cattle. Our study provides insight into the epigenetic basis of RFI and gene targets to improve FE in dairy cattle.
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Affiliation(s)
- Zhenbin Hu
- Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA
| | - Clarissa Boschiero
- Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA
| | - Cong-Jun Li
- Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA
| | - Erin E. Connor
- Department of Animal and Food Sciences, University of Delaware, Newark, DE 19716, USA
| | - Ransom L. Baldwin
- Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA
| | - George E. Liu
- Animal Genomics and Improvement Laboratory, Beltsville Agricultural Research Center, Agricultural Research Service, United States Department of Agriculture, Beltsville, MD 20705, USA
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Impacts of Heifer Post-Weaning Intake Classification on Performance Measurements of Lactating and Non-Lactating Two-, Five-, and Eight-Year-Old Angus Beef Females. Animals (Basel) 2022; 12:ani12131704. [PMID: 35804603 PMCID: PMC9265088 DOI: 10.3390/ani12131704] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2022] [Revised: 06/22/2022] [Accepted: 06/29/2022] [Indexed: 11/17/2022] Open
Abstract
Heifer post-weaning intake classification was utilized to evaluate subsequent intake and performance measurements of 2-, 5-, and 8-year-old lactating and non-lactating Angus females. For both studies, heifers were categorized based on voluntary feed intake (expressed as g/kg BW) as either low (<−0.50 SD from the mean), average (±0.50 SD from the mean), or high (>0.50 SD from the mean) within one year. Intake and production data of pregnant, non-lactating (n = 59; Study 1) and lactating, non-pregnant (n = 54; Study 2) females were evaluated. Heifer post-weaning voluntary feed intake was calculated over 80 test days post-weaning using GrowSafe feed intake units. Cow body-weight (BW) for non-lactating cows showed a tendency for age × intake interaction (p = 0.10), with older cows weighing more than younger cows. Milk production expressed as kilograms and g/kg BW of the cow had an age × intake (p < 0.001) effect. Two-year-old cows with low- and average-intake classifications had greater milk production (p < 0.001) and milk produced expressed as g/kg BW (p < 0.001) than 2-year-old cows with high-intake classifications. Additionally, 5-year-old cows with average and high-intake classifications had greater milk production (p < 0.001) and g/kg BW (p < 0.001) compared to 5-year-old cows classified as low-intake. In summary, heifer post-weaning intake classification had minor impacts on performance measurements in the three age classes of beef females at two different production levels.
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