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Chen C, Li X, Lu C, Zhou X, Chen L, Qiu C, Jin Z, Long J. Advances in alginate lyases and the potential application of enzymatic prepared alginate oligosaccharides: A mini review. Int J Biol Macromol 2024; 260:129506. [PMID: 38244735 DOI: 10.1016/j.ijbiomac.2024.129506] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 01/04/2024] [Accepted: 01/12/2024] [Indexed: 01/22/2024]
Abstract
Alginate is mainly a linear polysaccharide composed of randomly arranged β-D-mannuronic acid and α-L-guluronic acid linked by α, β-(1,4)-glycosidic bonds. Alginate lyases degrade alginate mainly adopting a β-elimination mechanism, breaking the glycosidic bonds between the monomers and forming a double bond between the C4 and C5 sugar rings to produce alginate oligosaccharides consisting of 2-25 monomers, which have various physiological functions. Thus, it can be used for the continuous industrial production of alginate oligosaccharides with a specific degree of polymerization, in accordance with the requirements of green exploitation of marine resources. With the development of structural analysis, the quantity of characterized alginate lyase structures is progressively growing, leading to a concomitant improvement in understanding the catalytic mechanism. Additionally, the use of molecular modification methods including rational design, truncated expression of non-catalytic domains, and recombination of conserved domains can improve the catalytic properties of the original enzyme, enabling researchers to screen out the enzyme with the expected excellent performance with high success rate and less workload. This review presents the latest findings on the catalytic mechanism of alginate lyases and outlines the methods for molecular modifications. Moreover, it explores the connection between the degree of polymerization and the physiological functions of alginate oligosaccharides, providing a reference for enzymatic preparation development and utilization.
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Affiliation(s)
- Chen Chen
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Xingfei Li
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Cheng Lu
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Bioengineering, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Xing Zhou
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Long Chen
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Chao Qiu
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China
| | - Zhengyu Jin
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China
| | - Jie Long
- The State Key Laboratory of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; School of Food Science and Technology, Jiangnan University, 1800 Lihu Road, Wuxi 214122, China; Collaborative Innovation Center of Food Safety and Quality Control in Jiangsu Province, Jiangnan University, Wuxi 214122, China.
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Yan Z, He X, Ayala J, Xu Q, Yu X, Hou R, Yao Y, Huang H, Wang H. The Impact of Bamboo Consumption on the Spread of Antibiotic Resistance Genes in Giant Pandas. Vet Sci 2023; 10:630. [PMID: 37999453 PMCID: PMC10675626 DOI: 10.3390/vetsci10110630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 10/20/2023] [Accepted: 10/22/2023] [Indexed: 11/25/2023] Open
Abstract
The spread of antibiotic resistance genes (ARGs) in the environment exacerbates the contamination of these genes; therefore, the role plants play in the transmission of resistance genes in the food chain requires further research. Giant pandas consume different bamboo parts at different times, which provides the possibility of investigating how a single food source can affect the variation in the spread of ARGs. In this study, metagenomic analysis and the Comprehensive Antibiotic Resistance Database (CARD) database were used to annotate ARGs and the differences in gut microbiota ARGs during the consumption of bamboo shoots, leaves, and culms by captive giant pandas. These ARGs were then compared to investigate the impact of bamboo part consumption on the spread of ARGs. The results showed that the number of ARGs in the gut microbiota of the subjects was highest during the consumption of bamboo leaves, while the variety of ARGs was highest during the consumption of shoots. Escherichia coli, which poses a higher risk of ARG dissemination, was significantly higher in the leaf group, while Klebsiella, Enterobacter, and Raoultella were significantly higher in the shoot group. The ARG risk brought by bamboo shoots and leaves may originate from soil and environmental pollution. It is recommended to handle the feces of giant pandas properly and regularly monitor the antimicrobial and virulence genes in their gut microbiota to mitigate the threat of antibiotic resistance.
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Affiliation(s)
- Zheng Yan
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
- Key Laboratory for Biodiversity and Ecological Engineering of Ministry of Education, Department of Ecology, College of Life Sciences, Beijing Normal University, Beijing 100875, China
| | - Xin He
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - James Ayala
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - Qin Xu
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - Xiaoqiang Yu
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - Rong Hou
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - Ying Yao
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - He Huang
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
| | - Hairui Wang
- Chengdu Research Base of Giant Panda Breeding, Chengdu 610081, China; (Z.Y.); (J.A.); (Q.X.); (X.Y.); (R.H.); (Y.Y.); (H.H.)
- Sichuan Key Laboratory of Conservation Biology for Endangered Wildlife, Chengdu 610081, China
- Sichuan Academy of Giant Panda, Chengdu 610081, China
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