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Kershenbaum A, Akçay Ç, Babu-Saheer L, Barnhill A, Best P, Cauzinille J, Clink D, Dassow A, Dufourq E, Growcott J, Markham A, Marti-Domken B, Marxer R, Muir J, Reynolds S, Root-Gutteridge H, Sadhukhan S, Schindler L, Smith BR, Stowell D, Wascher CAF, Dunn JC. Automatic detection for bioacoustic research: a practical guide from and for biologists and computer scientists. Biol Rev Camb Philos Soc 2024. [PMID: 39417330 DOI: 10.1111/brv.13155] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 09/30/2024] [Accepted: 10/04/2024] [Indexed: 10/19/2024]
Abstract
Recent years have seen a dramatic rise in the use of passive acoustic monitoring (PAM) for biological and ecological applications, and a corresponding increase in the volume of data generated. However, data sets are often becoming so sizable that analysing them manually is increasingly burdensome and unrealistic. Fortunately, we have also seen a corresponding rise in computing power and the capability of machine learning algorithms, which offer the possibility of performing some of the analysis required for PAM automatically. Nonetheless, the field of automatic detection of acoustic events is still in its infancy in biology and ecology. In this review, we examine the trends in bioacoustic PAM applications, and their implications for the burgeoning amount of data that needs to be analysed. We explore the different methods of machine learning and other tools for scanning, analysing, and extracting acoustic events automatically from large volumes of recordings. We then provide a step-by-step practical guide for using automatic detection in bioacoustics. One of the biggest challenges for the greater use of automatic detection in bioacoustics is that there is often a gulf in expertise between the biological sciences and the field of machine learning and computer science. Therefore, this review first presents an overview of the requirements for automatic detection in bioacoustics, intended to familiarise those from a computer science background with the needs of the bioacoustics community, followed by an introduction to the key elements of machine learning and artificial intelligence that a biologist needs to understand to incorporate automatic detection into their research. We then provide a practical guide to building an automatic detection pipeline for bioacoustic data, and conclude with a discussion of possible future directions in this field.
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Affiliation(s)
- Arik Kershenbaum
- Girton College and Department of Zoology, University of Cambridge, Huntingdon Road, Cambridge, CB3 0JG, UK
| | - Çağlar Akçay
- Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
| | - Lakshmi Babu-Saheer
- Computing Informatics and Applications Research Group, School of Computing and Information Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
| | - Alex Barnhill
- Pattern Recognition Lab, Department of Computer Science, Friedrich-Alexander-Universität Erlangen-Nürnberg, Erlangen, 91058, Germany
| | - Paul Best
- Université de Toulon, Aix Marseille Univ, CNRS, LIS, ILCB, CS 60584, Toulon, 83041 CEDEX 9, France
| | - Jules Cauzinille
- Université de Toulon, Aix Marseille Univ, CNRS, LIS, ILCB, CS 60584, Toulon, 83041 CEDEX 9, France
| | - Dena Clink
- K. Lisa Yang Center for Conservation Bioacoustics, Cornell Lab of Ornithology, Cornell University, 159 Sapsucker Woods Road, Ithaca, New York, 14850, USA
| | - Angela Dassow
- Biology Department, Carthage College, 2001 Alford Park Dr, 68 David A Straz Jr, Kenosha, Wisconsin, 53140, USA
| | - Emmanuel Dufourq
- African Institute for Mathematical Sciences, 7 Melrose Road, Muizenberg, Cape Town, 7441, South Africa
- Stellenbosch University, Jan Celliers Road, Stellenbosch, 7600, South Africa
- African Institute for Mathematical Sciences - Research and Innovation Centre, District Gasabo, Secteur Kacyiru, Cellule Kamatamu, Rue KG590 ST No 1, Kigali, Rwanda
| | - Jonathan Growcott
- Centre of Ecology and Conservation, College of Life and Environmental Sciences, University of Exeter, Cornwall Campus, Exeter, TR10 9FE, UK
- Wildlife Conservation Research Unit, Recanati-Kaplan Centre, Tubney House, Abingdon Road Tubney, Abingdon, OX13 5QL, UK
| | - Andrew Markham
- Department of Computer Science, University of Oxford, Parks Road, Oxford, OX1 3QD, UK
| | | | - Ricard Marxer
- Université de Toulon, Aix Marseille Univ, CNRS, LIS, ILCB, CS 60584, Toulon, 83041 CEDEX 9, France
| | - Jen Muir
- Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
| | - Sam Reynolds
- Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
| | - Holly Root-Gutteridge
- School of Natural Sciences, University of Lincoln, Joseph Banks Laboratories, Beevor Street, Lincoln, Lincolnshire, LN5 7TS, UK
| | - Sougata Sadhukhan
- Institute of Environment Education and Research, Pune Bharati Vidyapeeth Educational Campus, Satara Road, Pune, Maharashtra, 411 043, India
| | - Loretta Schindler
- Department of Zoology, Faculty of Science, Charles University, Prague, 128 44, Czech Republic
| | - Bethany R Smith
- Institute of Zoology, Zoological Society of London, Outer Circle, London, NW1 4RY, UK
| | - Dan Stowell
- Tilburg University, Tilburg, The Netherlands
- Naturalis Biodiversity Center, Darwinweg 2, Leiden, 2333 CR, The Netherlands
| | - Claudia A F Wascher
- Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
| | - Jacob C Dunn
- Behavioural Ecology Research Group, School of Life Sciences, Anglia Ruskin University, East Road, Cambridge, CB1 1PT, UK
- Department of Archaeology, University of Cambridge, Downing Street, Cambridge, CB2 3DZ, UK
- Department of Behavioral and Cognitive Biology, University of Vienna, University Biology Building (UBB), Djerassiplatiz 1, Vienna, 1030, Austria
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Nogueira AFR, Oliveira HS, Machado JJM, Tavares JMRS. Sound Classification and Processing of Urban Environments: A Systematic Literature Review. SENSORS (BASEL, SWITZERLAND) 2022; 22:8608. [PMID: 36433204 PMCID: PMC9698075 DOI: 10.3390/s22228608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 10/31/2022] [Accepted: 11/03/2022] [Indexed: 06/16/2023]
Abstract
Audio recognition can be used in smart cities for security, surveillance, manufacturing, autonomous vehicles, and noise mitigation, just to name a few. However, urban sounds are everyday audio events that occur daily, presenting unstructured characteristics containing different genres of noise and sounds unrelated to the sound event under study, making it a challenging problem. Therefore, the main objective of this literature review is to summarize the most recent works on this subject to understand the current approaches and identify their limitations. Based on the reviewed articles, it can be realized that Deep Learning (DL) architectures, attention mechanisms, data augmentation techniques, and pretraining are the most crucial factors to consider while creating an efficient sound classification model. The best-found results were obtained by Mushtaq and Su, in 2020, using a DenseNet-161 with pretrained weights from ImageNet, and NA-1 and NA-2 as augmentation techniques, which were of 97.98%, 98.52%, and 99.22% for UrbanSound8K, ESC-50, and ESC-10 datasets, respectively. Nonetheless, the use of these models in real-world scenarios has not been properly addressed, so their effectiveness is still questionable in such situations.
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Affiliation(s)
| | - Hugo S. Oliveira
- Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal
| | - José J. M. Machado
- Departamento de Engenharia Mecânica, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal
| | - João Manuel R. S. Tavares
- Departamento de Engenharia Mecânica, Faculdade de Engenharia, Universidade do Porto, Rua Dr. Roberto Frias, s/n, 4200-465 Porto, Portugal
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