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Kumar S, Kumar H, Kumar G, Singh SP, Bijalwan A, Diwakar M. A methodical exploration of imaging modalities from dataset to detection through machine learning paradigms in prominent lung disease diagnosis: a review. BMC Med Imaging 2024; 24:30. [PMID: 38302883 PMCID: PMC10832080 DOI: 10.1186/s12880-024-01192-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2023] [Accepted: 01/03/2024] [Indexed: 02/03/2024] Open
Abstract
BACKGROUND Lung diseases, both infectious and non-infectious, are the most prevalent cause of mortality overall in the world. Medical research has identified pneumonia, lung cancer, and Corona Virus Disease 2019 (COVID-19) as prominent lung diseases prioritized over others. Imaging modalities, including X-rays, computer tomography (CT) scans, magnetic resonance imaging (MRIs), positron emission tomography (PET) scans, and others, are primarily employed in medical assessments because they provide computed data that can be utilized as input datasets for computer-assisted diagnostic systems. Imaging datasets are used to develop and evaluate machine learning (ML) methods to analyze and predict prominent lung diseases. OBJECTIVE This review analyzes ML paradigms, imaging modalities' utilization, and recent developments for prominent lung diseases. Furthermore, the research also explores various datasets available publically that are being used for prominent lung diseases. METHODS The well-known databases of academic studies that have been subjected to peer review, namely ScienceDirect, arXiv, IEEE Xplore, MDPI, and many more, were used for the search of relevant articles. Applied keywords and combinations used to search procedures with primary considerations for review, such as pneumonia, lung cancer, COVID-19, various imaging modalities, ML, convolutional neural networks (CNNs), transfer learning, and ensemble learning. RESULTS This research finding indicates that X-ray datasets are preferred for detecting pneumonia, while CT scan datasets are predominantly favored for detecting lung cancer. Furthermore, in COVID-19 detection, X-ray datasets are prioritized over CT scan datasets. The analysis reveals that X-rays and CT scans have surpassed all other imaging techniques. It has been observed that using CNNs yields a high degree of accuracy and practicability in identifying prominent lung diseases. Transfer learning and ensemble learning are complementary techniques to CNNs to facilitate analysis. Furthermore, accuracy is the most favored metric for assessment.
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Affiliation(s)
- Sunil Kumar
- Department of Computer Engineering, J. C. Bose University of Science and Technology, YMCA, Faridabad, India
- Department of Information Technology, School of Engineering and Technology (UIET), CSJM University, Kanpur, India
| | - Harish Kumar
- Department of Computer Engineering, J. C. Bose University of Science and Technology, YMCA, Faridabad, India
| | - Gyanendra Kumar
- Department of Computer and Communication Engineering, Manipal University Jaipur, Jaipur, India
| | | | - Anchit Bijalwan
- Faculty of Electrical and Computer Engineering, Arba Minch University, Arba Minch, Ethiopia.
| | - Manoj Diwakar
- Department of Computer Science and Engineering, Graphic Era Deemed to Be University, Dehradun, India
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Cereser L, Cortiula F, Simiele C, Peruzzi V, Bortolot M, Tullio A, Como G, Zuiani C, Girometti R. Assessing the impact of structured reporting on learning how to report lung cancer staging CT: A triple cohort study on inexperienced readers. Eur J Radiol 2024; 171:111291. [PMID: 38218064 DOI: 10.1016/j.ejrad.2024.111291] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 01/03/2024] [Indexed: 01/15/2024]
Abstract
PURPOSE To assess the clinical utility of chest computed tomography (CT) reports for non-small-cell lung cancer (NSCLC) staging generated by inexperienced readers using structured reporting (SR) templates from the Royal College of Radiologists (RCR-SR) and the Italian Society of Medical and Interventional Radiology (SIRM-SR), compared to traditional non-systematic reports (NSR). METHODS In a cohort of 30 NSCLC patients, six third-year radiology residents reported CT examinations in two 2-month-apart separate sessions using NSR in the first and NSR, RCR-SR, or SIRM-SR in the second. Couples of expert radiologists and thoracic oncologists in consensus evaluated completeness, accuracy, and clarity. All the quality indicators were expressed on a 100-point scale. The Wilcoxon signed ranks, and Wilcoxon-Mann Whitney tests were used for statistical analyses. RESULTS Results showed significantly higher completeness for RCR-SR (90 %) and SIRM-SR (100 %) compared to NSR (70 %) in the second session (all p < 0.001). SIRM-SR demonstrated superior accuracy (70 % vs. 55 %, p < 0.001) over NSR, while RCR-SR and NSR accuracy did not significantly differ (60 % vs. 62.5 %, p = 0.06). In the second session, RCR-SR and SIRM-SR surpassed NSR in completeness, accuracy, and clarity (all p < 0.001, except p = 0.04 for accuracy between RCR-SR and NSR). SIRM-SR outperformed RCR-SR in completeness (100 % vs. 90 %, p < 0.001) and accuracy (70 % vs. 62.5 %, p = 0.002), with equivalent clarity (90 % for both, p = 0.27). CONCLUSIONS Inexperienced readers using RCR-SR and SIRM-SR demonstrated high-quality reporting, indicating their potential in radiology residency programs to enhance reporting skills for NSCLC staging and effective interaction with all the physicians involved in managing NSCLC patients.
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Affiliation(s)
- L Cereser
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
| | - F Cortiula
- Department of Oncology, Azienda Sanitaria Universitaria Friuli Centrale (ASUFC), Italy; Department of Radiation Oncology (Maastro), GROW School for Oncology and Reproduction, Maastricht University Medical Centre, The Netherlands.
| | - C Simiele
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
| | - V Peruzzi
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
| | - M Bortolot
- Department of Oncology, Azienda Sanitaria Universitaria Friuli Centrale (ASUFC), Italy.
| | - A Tullio
- Institute of Hygiene and Evaluative Epidemiology, Azienda Sanitaria Universitaria Friuli Centrale (ASUFC), Italy.
| | - G Como
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
| | - C Zuiani
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
| | - R Girometti
- Institute of Radiology, Department of Medicine, University of Udine, Italy.
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Abd El-Khalek AA, Balaha HM, Alghamdi NS, Ghazal M, Khalil AT, Abo-Elsoud MEA, El-Baz A. A concentrated machine learning-based classification system for age-related macular degeneration (AMD) diagnosis using fundus images. Sci Rep 2024; 14:2434. [PMID: 38287062 PMCID: PMC10825213 DOI: 10.1038/s41598-024-52131-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 01/14/2024] [Indexed: 01/31/2024] Open
Abstract
The increase in eye disorders among older individuals has raised concerns, necessitating early detection through regular eye examinations. Age-related macular degeneration (AMD), a prevalent condition in individuals over 45, is a leading cause of vision impairment in the elderly. This paper presents a comprehensive computer-aided diagnosis (CAD) framework to categorize fundus images into geographic atrophy (GA), intermediate AMD, normal, and wet AMD categories. This is crucial for early detection and precise diagnosis of age-related macular degeneration (AMD), enabling timely intervention and personalized treatment strategies. We have developed a novel system that extracts both local and global appearance markers from fundus images. These markers are obtained from the entire retina and iso-regions aligned with the optical disc. Applying weighted majority voting on the best classifiers improves performance, resulting in an accuracy of 96.85%, sensitivity of 93.72%, specificity of 97.89%, precision of 93.86%, F1 of 93.72%, ROC of 95.85%, balanced accuracy of 95.81%, and weighted sum of 95.38%. This system not only achieves high accuracy but also provides a detailed assessment of the severity of each retinal region. This approach ensures that the final diagnosis aligns with the physician's understanding of AMD, aiding them in ongoing treatment and follow-up for AMD patients.
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Affiliation(s)
- Aya A Abd El-Khalek
- Communications and Electronics Engineering Department, Nile Higher Institute for Engineering and Technology, Mansoura, Egypt
| | - Hossam Magdy Balaha
- BioImaging Lab, Department of Bioengineering, J.B. Speed School of Engineering, University of Louisville, Louisville, KY, USA
| | - Norah Saleh Alghamdi
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Mohammed Ghazal
- Electrical, Computer, and Biomedical Engineering Depatrment, Abu Dhabi University, Abu Dhabi, UAE
| | - Abeer T Khalil
- Communications and Electronics Engineering Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Mohy Eldin A Abo-Elsoud
- Communications and Electronics Engineering Department, Faculty of Engineering, Mansoura University, Mansoura, Egypt
| | - Ayman El-Baz
- BioImaging Lab, Department of Bioengineering, J.B. Speed School of Engineering, University of Louisville, Louisville, KY, USA.
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Farahat IS, Sharafeldeen A, Ghazal M, Alghamdi NS, Mahmoud A, Connelly J, van Bogaert E, Zia H, Tahtouh T, Aladrousy W, Tolba AE, Elmougy S, El-Baz A. An AI-based novel system for predicting respiratory support in COVID-19 patients through CT imaging analysis. Sci Rep 2024; 14:851. [PMID: 38191606 PMCID: PMC10774502 DOI: 10.1038/s41598-023-51053-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Accepted: 12/29/2023] [Indexed: 01/10/2024] Open
Abstract
The proposed AI-based diagnostic system aims to predict the respiratory support required for COVID-19 patients by analyzing the correlation between COVID-19 lesions and the level of respiratory support provided to the patients. Computed tomography (CT) imaging will be used to analyze the three levels of respiratory support received by the patient: Level 0 (minimum support), Level 1 (non-invasive support such as soft oxygen), and Level 2 (invasive support such as mechanical ventilation). The system will begin by segmenting the COVID-19 lesions from the CT images and creating an appearance model for each lesion using a 2D, rotation-invariant, Markov-Gibbs random field (MGRF) model. Three MGRF-based models will be created, one for each level of respiratory support. This suggests that the system will be able to differentiate between different levels of severity in COVID-19 patients. The system will decide for each patient using a neural network-based fusion system, which combines the estimates of the Gibbs energy from the three MGRF-based models. The proposed system were assessed using 307 COVID-19-infected patients, achieving an accuracy of [Formula: see text], a sensitivity of [Formula: see text], and a specificity of [Formula: see text], indicating a high level of prediction accuracy.
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Affiliation(s)
- Ibrahim Shawky Farahat
- Department of Computer Science, Faculty of Computers and Information, Mansoura University, Mansoura, Egypt
| | | | - Mohammed Ghazal
- Electrical, Computer and Biomedical Engineering Department, Abu Dhabi University, Abu Dhabi, UAE
| | - Norah Saleh Alghamdi
- Department of Computer Sciences, College of Computer and Information Sciences, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Ali Mahmoud
- Department of Bioengineering, University of Louisville, Louisville, USA
| | - James Connelly
- Department of Radiology, University of Louisville, Louisville, USA
| | - Eric van Bogaert
- Department of Radiology, University of Louisville, Louisville, USA
| | - Huma Zia
- Electrical, Computer and Biomedical Engineering Department, Abu Dhabi University, Abu Dhabi, UAE
| | - Tania Tahtouh
- College of Health Sciences, Abu Dhabi University, Abu Dhabi, UAE
| | - Waleed Aladrousy
- Department of Computer Science, Faculty of Computers and Information, Mansoura University, Mansoura, Egypt
| | - Ahmed Elsaid Tolba
- Department of Computer Science, Faculty of Computers and Information, Mansoura University, Mansoura, Egypt
- The Higher Institute of Engineering and Automotive Technology and Energy, Kafr El Sheikh, Egypt
| | - Samir Elmougy
- Department of Computer Science, Faculty of Computers and Information, Mansoura University, Mansoura, Egypt
| | - Ayman El-Baz
- Department of Bioengineering, University of Louisville, Louisville, USA.
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Jahangiri OS, Robbins JR, Nagaraju S. Masquerading as Pneumonia: A Lung Neuroendocrine Tumor Case Report. Cureus 2023; 15:e46411. [PMID: 37800163 PMCID: PMC10548491 DOI: 10.7759/cureus.46411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/02/2023] [Indexed: 10/07/2023] Open
Abstract
The presentation of recurrent pneumonia, particularly in the same lobe, should raise suspicion for possible neuroendocrine tumors of the lung within that respective lobe. Commonly, these types of tumors will have a gastrointestinal origin with a larger incidence of carcinoid syndrome, but they may also originate in the pancreas or lungs. This case illustrates the potential for a masked lung tumor in an otherwise young and healthy 31-year-old patient, with a short history of tobacco dependence and unremarkable family history, who presents with recurrent pneumonia and dyspnea. Although rare in itself, this case was even more unique due to the partial calcification of the neuroendocrine tumor mass along with causing a collapse in the entire right middle lobe.
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Affiliation(s)
- Omeed S Jahangiri
- Clinical Medicine/Internal Medicine, Burrell College of Osteopathic Medicine, Albuquerque, USA
| | - Joshua R Robbins
- Clinical Medicine/Internal Medicine, Burrell College of Osteopathic Medicine, Albuquerque, USA
| | - Sivakumar Nagaraju
- Internal Medicine, Burrell College of Osteopathic Medicine, Albuquerque, USA
- Pulmonary and Critical Care, Lovelace Medical Center, Albuquerque, USA
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Yolchuyeva S, Giacomazzi E, Tonneau M, Ebrahimpour L, Lamaze FC, Orain M, Coulombe F, Malo J, Belkaid W, Routy B, Joubert P, Manem VSK. A Radiomics-Clinical Model Predicts Overall Survival of Non-Small Cell Lung Cancer Patients Treated with Immunotherapy: A Multicenter Study. Cancers (Basel) 2023; 15:3829. [PMID: 37568646 PMCID: PMC10417039 DOI: 10.3390/cancers15153829] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2023] [Revised: 07/14/2023] [Accepted: 07/24/2023] [Indexed: 08/13/2023] Open
Abstract
BACKGROUND Immune checkpoint inhibitors (ICIs) are a great breakthrough in cancer treatments and provide improved long-term survival in a subset of non-small cell lung cancer (NSCLC) patients. However, prognostic and predictive biomarkers of immunotherapy still remain an unmet clinical need. In this work, we aim to leverage imaging data and clinical variables to develop survival risk models among advanced NSCLC patients treated with immunotherapy. METHODS This retrospective study includes a total of 385 patients from two institutions who were treated with ICIs. Radiomics features extracted from pretreatment CT scans were used to build predictive models. The objectives were to predict overall survival (OS) along with building a classifier for short- and long-term survival groups. We employed the XGBoost learning method to build radiomics and integrated clinical-radiomics predictive models. Feature selection and model building were developed and validated on a multicenter cohort. RESULTS We developed parsimonious models that were associated with OS and a classifier for short- and long-term survivor groups. The concordance indices (C-index) of the radiomics model were 0.61 and 0.57 to predict OS in the discovery and validation cohorts, respectively. While the area under the curve (AUC) values of the radiomic models for short- and long-term groups were found to be 0.65 and 0.58 in the discovery and validation cohorts. The accuracy of the combined radiomics-clinical model resulted in 0.63 and 0.62 to predict OS and in 0.77 and 0.62 to classify the survival groups in the discovery and validation cohorts, respectively. CONCLUSIONS We developed and validated novel radiomics and integrated radiomics-clinical survival models among NSCLC patients treated with ICIs. This model has important translational implications, which can be used to identify a subset of patients who are not likely to benefit from immunotherapy. The developed imaging biomarkers may allow early prediction of low-group survivors, though additional validation of these radiomics models is warranted.
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Affiliation(s)
- Sevinj Yolchuyeva
- Department of Mathematics and Computer Science, Université du Québec à Trois Rivières, Trois-Rivières, QC G8Z 4M3, Canada
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
| | - Elena Giacomazzi
- Department of Mathematics and Computer Science, Université du Québec à Trois Rivières, Trois-Rivières, QC G8Z 4M3, Canada
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
| | - Marion Tonneau
- Centre de Recherche du Centre Hospitalier Universitaire de Montréal, Montréal, QC H2X 0A9, Canada
- Université de Médecine de Lille—Université Henri Warembourg, 59020 Lille, France
| | - Leyla Ebrahimpour
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
- Department of Physics, Engineering Physics and Optics, Laval University, Quebec City, QC G1V 4G5, Canada
| | - Fabien C. Lamaze
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
| | - Michele Orain
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
| | - François Coulombe
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
| | - Julie Malo
- Centre de Recherche du Centre Hospitalier Universitaire de Montréal, Montréal, QC H2X 0A9, Canada
| | - Wiam Belkaid
- Centre de Recherche du Centre Hospitalier Universitaire de Montréal, Montréal, QC H2X 0A9, Canada
| | - Bertrand Routy
- Centre de Recherche du Centre Hospitalier Universitaire de Montréal, Montréal, QC H2X 0A9, Canada
| | - Philippe Joubert
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
- Department of Molecular Biology, Medical Biochemistry and Pathology, Laval University, Québec City, QC G1V 0A6, Canada
| | - Venkata S. K. Manem
- Department of Mathematics and Computer Science, Université du Québec à Trois Rivières, Trois-Rivières, QC G8Z 4M3, Canada
- Quebec Heart & Lung Institute Research Center, Québec City, QC G1V 4G5, Canada (M.O.)
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