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For: Akhter N, Chennupati G, Kabir KL, Djidjev H, Shehu A. Unsupervised and Supervised Learning over theEnergy Landscape for Protein Decoy Selection. Biomolecules 2019;9:E607. [PMID: 31615116 PMCID: PMC6843838 DOI: 10.3390/biom9100607] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2019] [Revised: 10/03/2019] [Accepted: 10/04/2019] [Indexed: 11/17/2022]  Open
Number Cited by Other Article(s)
1
Kabir KL, Ma B, Nussinov R, Shehu A. Fewer Dimensions, More Structures for Improved Discrete Models of Dynamics of Free versus Antigen-Bound Antibody. Biomolecules 2022;12:biom12071011. [PMID: 35883567 PMCID: PMC9313177 DOI: 10.3390/biom12071011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/12/2022] [Accepted: 07/19/2022] [Indexed: 12/10/2022]  Open
2
Keller GLJ, Weiss LI, Baker BM. Physicochemical Heuristics for Identifying High Fidelity, Near-Native Structural Models of Peptide/MHC Complexes. Front Immunol 2022;13:887759. [PMID: 35547730 PMCID: PMC9084917 DOI: 10.3389/fimmu.2022.887759] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2022] [Accepted: 03/29/2022] [Indexed: 11/13/2022]  Open
3
Akhter N, Kabir KL, Chennupati G, Vangara R, Alexandrov BS, Djidjev H, Shehu A. Improved Protein Decoy Selection via Non-Negative Matrix Factorization. IEEE/ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS 2022;19:1670-1682. [PMID: 33400654 DOI: 10.1109/tcbb.2020.3049088] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
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