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Sušanj R, Nemec V, Bedeković N, Cinčić D. Halogen Bond Motifs in Cocrystals of N, N, O and N, O, O Acceptors Derived from Diketones and Containing a Morpholine or Piperazine Moiety. CRYSTAL GROWTH & DESIGN 2022; 22:5135-5142. [PMID: 36097548 PMCID: PMC9461725 DOI: 10.1021/acs.cgd.2c00665] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Revised: 07/26/2022] [Indexed: 06/15/2023]
Abstract
In this study, we investigate the halogen bond acceptor potential of oxygen and nitrogen atoms of morpholine and piperazine fragments when they are peripherally located on N,O,O or N,N,O acceptor molecules. We synthesized four acceptor molecules derived from either acetylacetone or benzoylacetone and cocrystallized them with 1,4-diiodotetrafluorobenzene and 1,3,5-triiodotrifluorobenzene. This resulted in eight cocrystals featuring different topicities and geometric dispositions of donor atoms. In all cocrystals, halogen bonds are formed with either the morpholinyl oxygen atom or the terminal piperazine nitrogen atom. The I···Omorpholine halogen bonds feature lower relative shortening values than I···Nterminal, I···Ocarbonyl, and I···Nproximal halogen bonds. The N and O halogen bond acceptor sites were evaluated through calculations of molecular electrostatic potential values.
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Nakane K, Niwa T, Tsushima M, Tomoshige S, Taguchi H, Nakamura H, Ishikawa M, Sato S. BODIPY Catalyzes Proximity‐Dependent Histidine Labelling. ChemCatChem 2022. [DOI: 10.1002/cctc.202200077] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Keita Nakane
- Tohoku University: Tohoku Daigaku Graduate School of Life Science JAPAN
| | - Tatsuya Niwa
- Tokyo Institute of Technology: Tokyo Kogyo Daigaku Cell Biology Center, Institute of Innovative research JAPAN
| | - Michihiko Tsushima
- Tokyo Institute of Technology: Tokyo Kogyo Daigaku Laboratory for Chemistry and Life Science, Institute of Innovative Research JAPAN
| | - Shusuke Tomoshige
- Tohoku University: Tohoku Daigaku Graduate School of Life Sciences JAPAN
| | - Hideki Taguchi
- Tokyo Institute of Technology: Tokyo Kogyo Daigaku Cell Biology Center, Institute of Innovative Research JAPAN
| | - Hiroyuki Nakamura
- Tokyo Institute of Technology: Tokyo Kogyo Daigaku Laboratory for Chemistry and Life Science, Institute of Innovative Research JAPAN
| | - Minoru Ishikawa
- Tohoku University: Tohoku Daigaku Graduate School of Life Sciences JAPAN
| | - Shinichi Sato
- Tohoku University: Tohoku Daigaku Frontier Research Institute for Interdisciplinary Sciences 2-1-1 Katahira, Aoba-ku, Sendai-shi 980-8577 Miyagi JAPAN
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Özcan E, Dedeoglu B, Chumakov Y, Gürek AG, Zorlu Y, Çoşut B, Menaf Ayhan M. Halogen-Bonded BODIPY Frameworks with Tunable Optical Features*. Chemistry 2021; 27:1603-1608. [PMID: 32996613 DOI: 10.1002/chem.202003945] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2020] [Revised: 09/26/2020] [Indexed: 01/15/2023]
Abstract
The ability to tune the optical features of BODIPY materials in the solid state is essential for their photorelated application and requires efficient control of the crystal packing. In this study, such control of BODIPY supramolecular assemblies was achieved by deliberate design and synthesis of a BODIPY containing a strong halogen-bond (XB) acceptor (-NO2 ) and donor (I, Br) to mediate XB interactions. The di-halogenated structures formed isostructural mono-coordinate motif B3, B4 (1D tubular structure) and symmetric bifurcated motif B4-II (1D zigzag chains structure) through N-O⋅⋅⋅I, Br XB interactions. These XB interactions promote singlet-to-triplet intersystem crossing and triplet-to-singlet reverse intersystem crossing due to partial delocalization of oxygen electrons onto Br and I, which leads to unexpected fluorescence enhancement of B4-II. Finally, the indirect optical band gaps of B3, B4 and B4-II were amenable to tuning in the range of 1.85-2.50 eV by XB-driven crystal packings.
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Affiliation(s)
- Emrah Özcan
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey.,Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 37005, České Budějovice, Czech Republic
| | - Burcu Dedeoglu
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
| | - Yuri Chumakov
- Department of Physics, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
| | - Ayşe Gül Gürek
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
| | - Yunus Zorlu
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
| | - Bünyemin Çoşut
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
| | - Mehmet Menaf Ayhan
- Department of Chemistry, Faculty of Science, Gebze Technical University, 41400, Gebze, Kocaeli, Turkey
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Özcan E, Dedeoglu B, Chumakov Y, Zorlu Y, Çoşut B, Ayhan MM. Modulation of supramolecular self-assembly of BODIPY tectons via halogen bonding. CrystEngComm 2021. [DOI: 10.1039/d1ce00862e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Abstract
In this study, the efficiency of halogen bonding strategies to control over the supramolecular assemblies of boron dipyrromethene (BODIPY) (B-1, B-2, and B-3) derivatives was explored.
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Affiliation(s)
- Emrah Özcan
- Department of Chemistry, Gebze Technical University, Gebze, Kocaeli, 41400 Turkey
- Institute of Physics, Faculty of Science, University of South Bohemia, Branišovská 1760, 370 05, České Budějovice, Czech Republic
| | - Burcu Dedeoglu
- Department of Chemistry, Gebze Technical University, Gebze, Kocaeli, 41400 Turkey
| | - Yurii Chumakov
- Department of Physics, Gebze Technical University, Gebze, Kocaeli, Turkey
- Institute of Applied Physics, MD-2028, Chisinau, Moldova
| | - Yunus Zorlu
- Department of Chemistry, Gebze Technical University, Gebze, Kocaeli, 41400 Turkey
| | - Bünyemin Çoşut
- Department of Chemistry, Gebze Technical University, Gebze, Kocaeli, 41400 Turkey
| | - Mehmet Menaf Ayhan
- Department of Chemistry, Gebze Technical University, Gebze, Kocaeli, 41400 Turkey
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Ayhan MM, Özcan E, Dedeoglu B, Chumakov Y, Zorlu Y, Coşut B. Carbon (sp 3) tetrel bonding mediated BODIPY supramolecular assembly via unprecedented synergy of C sp3⋯N and C sp3⋯F pair interactions. CrystEngComm 2021. [DOI: 10.1039/d0ce01640c] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Here, we present the first example of sp3 hybridized carbon centered (Csp3) tetrel bonding mediated 3D BODIPY assembly via the exceptional synergy of Csp3⋯N and Csp3⋯F pair interactions.
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Affiliation(s)
| | - Emrah Özcan
- Department of Chemistry
- Gebze Technical University
- Gebze
- Turkey
- Institute of Physics
| | - Burcu Dedeoglu
- Department of Chemistry
- Gebze Technical University
- Gebze
- Turkey
| | - Yurii Chumakov
- Department of Physics
- Gebze Technical University
- Gebze
- Turkey
- Institute of Applied Physics
| | - Yunus Zorlu
- Department of Chemistry
- Gebze Technical University
- Gebze
- Turkey
| | - Bünyemin Coşut
- Department of Chemistry
- Gebze Technical University
- Gebze
- Turkey
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