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Vazquez-Chavez J, Martínez-Torres FC, Navarro-Huerta A, Flores-Alamo M, Maldonado-Domínguez M, Blahut J, Štoček JR, Dračínský M, Rodríguez-Molina B, Iglesias-Arteaga MA. A Crystalline Dimeric Steroidal Diboronate with Electronically Impeded Rotation. J Org Chem 2023; 88:49-59. [PMID: 36480791 DOI: 10.1021/acs.joc.2c01676] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The dimeric steroid SMR-3, featuring a 1,4-phenyldiboronic ester flanked by two pregnan-triol frameworks, was synthesized to explore the intramolecular dynamics of its central component. The structural data from single-crystal X-ray diffraction studies and the Hirshfeld analyses indicate small steric effects around the aromatic ring that should favor the intended motion. However, solid-state NMR data obtained through VT 13C{1H} CPMAS and 2H spin-echo experiments, using the deuterated analogue SMR-3D4, revealed that this component is rigid even at temperatures where other reported steroidal molecular rotors experience fast rotation (85 °C). A combination of classical molecular dynamics, molecular mechanics, and correlated ab initio calculations allowed us to distinguish the steric and electronic factors that restrict the potential motion in this compound. The experimental and computational data reveal that electronic components dominate the behavior and are responsible for the high rotational barrier in the SMR-3 crystal.
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Affiliation(s)
- Josué Vazquez-Chavez
- Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 Ciudad de México, México
| | - Fátima C Martínez-Torres
- Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 Ciudad de México, México
| | - Armando Navarro-Huerta
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, 04510 Ciudad de México, México
| | - Marcos Flores-Alamo
- Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 Ciudad de México, México
| | | | - Jan Blahut
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 160 00 Prague, Czech Republic
| | - Jakub Radek Štoček
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 160 00 Prague, Czech Republic
| | - Martin Dračínský
- Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo nám. 2, 160 00 Prague, Czech Republic
| | - Braulio Rodríguez-Molina
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, 04510 Ciudad de México, México
| | - Martín A Iglesias-Arteaga
- Facultad de Química, Universidad Nacional Autónoma de México, Ciudad Universitaria, 04510 Ciudad de México, México
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DER FG, YALCIN G, OZCAN BULBUL E, ILERI H, CIHAN B, GOKCAN M, ESITMEZ YC, KILINC E. Hydrolytic Stability of Hydroxyphenyl Boronic Acids(HPBAs) and Employment of Poly(HPBAs) for Voltammetric Determination of Fluoride Levels in Dental Formulations and Beverages; Significance of Raw DPV Data for Chemometric Discrimination. ELECTROANAL 2022. [DOI: 10.1002/elan.202200012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
| | | | | | - Hakan ILERI
- Gensenta Pharmaceuticals Department of Govermental Affairs Ankara Turkey TURKEY
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3
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Nowicki K, Pacholak P, Luliński S. Heteroelement Analogues of Benzoxaborole and Related Ring Expanded Systems. Molecules 2021; 26:5464. [PMID: 34576937 PMCID: PMC8468133 DOI: 10.3390/molecules26185464] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2021] [Revised: 09/03/2021] [Accepted: 09/06/2021] [Indexed: 11/16/2022] Open
Abstract
The review covers the chemistry of organoboron heterocycles structurally related to benzoxaboroles where one of the carbon atoms in a boracycle or a fused benzene ring is replaced by a heteroelement such as boron, silicon, tin, nitrogen, phosphorus, or iodine. Related ring expanded systems including those based on naphthalene and biphenyl cores are also described. The information on synthetic methodology as well as the basic structural and physicochemical characteristics of these emerging heterocycles is complemented by a presentation of their potential applications in organic synthesis and medicinal chemistry, the latter aspect being mostly focused on the promising antimicrobial activity of selected compounds.
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Affiliation(s)
- Krzysztof Nowicki
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, PL-00-664 Warsaw, Poland; (K.N.); (P.P.)
| | - Piotr Pacholak
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, PL-00-664 Warsaw, Poland; (K.N.); (P.P.)
- Faculty of Chemistry, University of Warsaw, Pasteura 1, PL-02-093 Warsaw, Poland
| | - Sergiusz Luliński
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, PL-00-664 Warsaw, Poland; (K.N.); (P.P.)
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Drapała J, Marek-Urban PH, Klimkowski P, Urbanowicz KA, Gontarczyk K, Woźniak K, Luliński S, Durka K. Design of solvatomorphic structures based on a polyboronated tetraphenyladamantane molecular tecton. CrystEngComm 2021. [DOI: 10.1039/d1ce01297e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
A series of solvatomorphic structures of tetrakis(4-dihydroxyborylphenyl)adamantane were investigated.
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Affiliation(s)
- Jakub Drapała
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Paulina H. Marek-Urban
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
- Department of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Piotr Klimkowski
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Karolina A. Urbanowicz
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Krzysztof Gontarczyk
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Krzysztof Woźniak
- Department of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
| | - Sergiusz Luliński
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
| | - Krzysztof Durka
- Faculty of Chemistry, Warsaw University of Technology, Noakowskiego 3, 00-664 Warsaw, Poland
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5
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Forensi S, Stopin A, de Leo F, Wouters J, Bonifazi D. 1,8,10-Trisubstituted anthracenyl hydrocarbons: Towards versatile scaffolds for multiple-H-bonded recognition arrays. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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6
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Adamczyk-Woźniak A, Sporzyński A. The influence of ortho-substituents on the properties of phenylboronic acids. J Organomet Chem 2020. [DOI: 10.1016/j.jorganchem.2020.121202] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
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Cui D, Fang Y, MacLean O, Perepichka DF, Rosei F, Clair S. Covalent organic frameworks from a monomer with reduced symmetry: polymorphism and Sierpiński triangles. Chem Commun (Camb) 2019; 55:13586-13589. [PMID: 31657366 DOI: 10.1039/c9cc05674b] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
We report on the synthesis of a covalent organic framework based on the low-symmetry 1,3-benzenediboronic acid precursor. Two distinct polymorphs are obtained, a honeycomb network and Sierpiński triangles, as elucidated by scanning tunneling microscopy. Control over polymorph formation was achieved by varying the precursor concentration for on-surface synthesis.
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Affiliation(s)
- Daling Cui
- Centre Énergie, Matériaux et Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, Québec J3X 1S2, Canada.
| | - Yuan Fang
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Québec H3A 0B8, Canada.
| | - Oliver MacLean
- Centre Énergie, Matériaux et Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, Québec J3X 1S2, Canada.
| | - Dmitrii F Perepichka
- Department of Chemistry, McGill University, 801 Sherbrooke Street West, Montreal, Québec H3A 0B8, Canada.
| | - Federico Rosei
- Centre Énergie, Matériaux et Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, Québec J3X 1S2, Canada.
| | - Sylvain Clair
- Centre Énergie, Matériaux et Télécommunications, Institut National de la Recherche Scientifique, 1650 Boulevard Lionel-Boulet, Varennes, Québec J3X 1S2, Canada. and Aix Marseille Univ, Université de Toulon, CNRS, IM2NP, Marseille, France.
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Guerra RB, Huamaní LSC, Tenorio JC, Guimarães WM, Bonacin JA, Barboza Formiga AL. Analysis of solvent-accessible voids and proton-coupled electron transfer of 2,6-bis(1H-imidazol-2-yl)pyridine and its hydrochloride. ACTA CRYSTALLOGRAPHICA SECTION C-STRUCTURAL CHEMISTRY 2019; 75:1359-1371. [PMID: 31589152 DOI: 10.1107/s2053229619011951] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/24/2019] [Accepted: 08/29/2019] [Indexed: 11/11/2022]
Abstract
The crystal structures of the solid form of solvated 2,6-bis(1H-imidazol-2-yl)pyridine (H2dimpy) trihydrate, C11H9N5·3H2O·[+solvent], I, and its hydrate hydrochloride salt 2-[6-(1H-imidazol-2-yl)pyridin-2-yl]-1H-imidazol-3-ium chloride trihydrate, C11H10N5+·Cl-·3H2O, II, are reported and analysed in detail, along with potentiometric and spectrophotometric titrations for evaluation of the acid-base equilibria and proton-coupled electron-transfer reactions. Compound I crystallizes in the high-symmetry trigonal space group P3221 with an atypical formation of solvent-accessible voids, as a consequence of the 32 screw axis in the crystallographic c-axis direction, which are probably occupied by uncharacterized disordered solvent molecules. Additionally, the trihydrated chloride salt crystallizes in the conventional monoclinic space group P21/c without the formation of solvent-accessible voids. The acid-base equilibria of H2dimpy were studied by potentiometric and spectrophotometric titrations, and the results suggest the formation of H3dimpy+ (pKa1 = 5.40) and H4dimpy2+ (pKa2 = 3.98), with the electrochemical behaviour of these species showing two consecutive irreversible proton-coupled electron-transfer reactions. Density functional theory (DFT) calculations corroborate the interpretation of the experimental results and support the assignment of the electrochemical behaviour.
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Affiliation(s)
- Renan B Guerra
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
| | - Luis S C Huamaní
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
| | - Juan C Tenorio
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
| | - Willian M Guimarães
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
| | - Juliano A Bonacin
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
| | - André Luiz Barboza Formiga
- Department of Inorganic Chemistry, University of Campinas - UNICAMP, 6154, Campinas, São Paulo 13083-970, Brazil
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