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Mousavi SA, Ramula S. The invasive legume Lupinus polyphyllus has minor site-specific impacts on the composition of soil bacterial communities. Ecol Evol 2024; 14:e11030. [PMID: 38357596 PMCID: PMC10864723 DOI: 10.1002/ece3.11030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Revised: 01/26/2024] [Accepted: 02/01/2024] [Indexed: 02/16/2024] Open
Abstract
Plant invasions can have major impacts on ecosystems, both above- and belowground. In particular, invasions by legumes, which often host nitrogen-fixing symbionts (rhizobia), are known to modify soil bacterial communities. Here, we examined the effect of the invasive herbaceous legume Lupinus polyphyllus on the alpha diversity and community composition of soil bacteria. We also explored the relationships between these bacterial communities and vegetation cover, the cover of other (non-invasive) legumes, or the number of vascular plants present. For this, we sampled rhizosphere soil and surveyed vegetation from ten paired sites (uninvaded versus invaded more than 10 years ago) in southwestern Finland, and identified bacterial DNA using 16S rRNA gene amplicon sequencing. The presence of the plant invader and the three vegetation variables considered had no effect on the alpha diversity of soil bacteria in terms of bacterial richness or Shannon and Inverse Simpson diversity indices. However, the composition of soil bacterial communities differed between invaded and uninvaded soils at four out of the ten sites. Interestingly, the relative abundances of the top bacterial families in invaded and uninvaded soils were inconsistent across sites, including for legume-associated rhizobia in the family Bradyrhizobiaceae. Other factors-such as vegetation cover, legume cover (excluding L. polyphyllus), number of plant species-also explained a small proportion of the variation in bacterial community composition. Our findings indicate that L. polyphyllus has the potential to modify the composition of local soil bacterial community, at least in sites where it has been present for more than a decade.
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Affiliation(s)
| | - Satu Ramula
- Department of BiologyUniversity of TurkuTurkuFinland
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Hussain K, Ahmad R, Nuñez MA, Dar TUH, Rashid I, Khuroo AA. Plant invasion shifts soil microbiome and physico-chemical attributes along an elevational gradient in Kashmir Himalaya. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2023; 30:84283-84299. [PMID: 37358769 DOI: 10.1007/s11356-023-28197-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Accepted: 06/06/2023] [Indexed: 06/27/2023]
Abstract
Soil microbial communities, being situated at the interface of aboveground plant and belowground soil systems, can play a pivotal role in determining ecosystem response to the drivers of global environmental change, including invasive species. In mountains, invasive plants occurring along elevational gradients offer a unique natural experimental system to investigate the impact of invasions in determining patterns and relationships of soil microbial diversity and nutrient pools at much shorter spatial distances. Here, we studied the impact of a global plant invader, Leucanthemum vulgare, on the diversity of soil microbiome and physico-chemical attributes along an elevational gradient (1760-2880 m) in Kashmir Himalaya. We used Illumina MiSeq platform to characterize the soil microbiome in pair-wise invaded and uninvaded plots at four different sites along the gradient. We found a total of 1959 bacterial operational taxonomic units (OTUs) belonging to 152 species, and a relatively higher number of 2475 fungal OTUs belonging to 589 species. The α-diversity of soil microbiome showed a gradual increase from low to high elevation and differed significantly (p < 0.05) between the invaded and uninvaded plots. The β-diversity revealed distinct microbiome clustering among the sampling sites. Plant invasion also altered soil physico-chemical attributes along the elevational gradient. Overall, our findings suggest that the L. vulgare-induced shifts in soil microbiome and nutrient pools may be a belowground self-reinforced mechanism to facilitate its successful invasion along the elevational gradient. Our study provides new insights into invasive plant-microbe relationships with wide implications for climate warming-driven elevational range shifts in mountains.
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Affiliation(s)
- Khalid Hussain
- Centre for Biodiversity & Taxonomy, Department of Botany, University of Kashmir, Srinagar, 190 006, Jammu and Kashmir, India
| | - Rameez Ahmad
- Centre for Biodiversity & Taxonomy, Department of Botany, University of Kashmir, Srinagar, 190 006, Jammu and Kashmir, India
| | - Martin A Nuñez
- Department of Biology and Biochemistry, University of Houston, Houston, TX, 77204, USA
| | - Tanvir Ul Hassan Dar
- Department of Biotechnology, School of Biosciences and Biotechnology, BGSB University, Rajouri, 185234, Jammu and Kashmir, India
| | - Irfan Rashid
- Biological Invasions Laboratory, Department of Botany, University of Kashmir, Srinagar, 190 006, Jammu and Kashmir, India
| | - Anzar Ahmad Khuroo
- Centre for Biodiversity & Taxonomy, Department of Botany, University of Kashmir, Srinagar, 190 006, Jammu and Kashmir, India.
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Perdomo-González A, Pérez-Reverón R, Goberna M, León-Barrios M, Fernández-López M, Villadas PJ, Reyes-Betancort JA, Díaz-Peña FJ. How harmful are exotic plantations for soils and its microbiome? A case study in an arid island. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 879:163030. [PMID: 36963683 DOI: 10.1016/j.scitotenv.2023.163030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 03/17/2023] [Accepted: 03/20/2023] [Indexed: 05/17/2023]
Abstract
The plantation of exotic species has been a common practice in (semi-) arid areas worldwide aiming to restore highly degraded habitats. The effects of these plantations on plant cover or soil erosion have been widely studied, while little attention has been paid to the consequences on soil quality and belowground biological communities. This study evaluates the long-term (>60 years) effects of the exotic species Acacia cyclops and Pinus halepensis revegetation on soil properties, including microbiome, in an arid island. Soils under exotic plantation were compared to both degraded soils with a very low cover of native species and soils with well-preserved native plant communities. Seven scenarios were selected in a small area (~25 ha) with similar soil type but differing in the plant cover. Topsoils (0-15 cm) were analyzed for physical, chemical and biochemical properties, and amplicon sequencing of bacterial and fungal communities. Microbial diversity was similar among soils with exotic plants and native vegetation (Shannon's index = 5.26 and 5.34, respectively), while the most eroded soils exhibited significantly lower diversity levels (Shannon's index = 4.72). Bacterial and fungal communities' composition in degraded soils greatly differed from those in vegetated soils (Canberra index = 0.85 and 0.92, respectively) likely due to high soil sodicity, fine textures and compaction. Microbial communities' composition also differed in soils covered with exotic and native species, to a greater extent for fungi than for bacteria (Canberra index = 0.94 and 0.89, respectively), due to higher levels of nutrients, microbial biomass and activity in soils with native species. Results suggest that reforestation succeeded in avoiding further soil degradation but still leading to relevant changes in soil microbial community that may have negative effects on ecosystem stability. Information gained in this research could be useful for environmental agencies and decision makers about the controversial replacement of exotic plants in insular territories.
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Affiliation(s)
- Adolfo Perdomo-González
- Departamento de Biología Animal, Edafología y Geología, Universidad de La Laguna, 38200 San Cristóbal de La Laguna, Spain.
| | - Raquel Pérez-Reverón
- Departamento de Biología Animal, Edafología y Geología, Universidad de La Laguna, 38200 San Cristóbal de La Laguna, Spain
| | - Marta Goberna
- Departamento de Medio Ambiente y Agronomía, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA-CSIC), Madrid, Spain
| | - Milagros León-Barrios
- Departamento de Bioquímica, Microbiología, Biología Celular y Genética, Universidad de La Laguna, 38200 San Cristóbal de La Laguna, Spain
| | - Manuel Fernández-López
- Grupo de Microbiología de Ecosistemas Agroforestales, Departamento de Microbiología del Suelo y la Planta, Estación Experimental del Zaidín, CSIC, 18008 Granada, Spain
| | - Pablo J Villadas
- Grupo de Microbiología de Ecosistemas Agroforestales, Departamento de Microbiología del Suelo y la Planta, Estación Experimental del Zaidín, CSIC, 18008 Granada, Spain
| | - J Alfredo Reyes-Betancort
- Jardín de Aclimatación de La Orotava, Instituto Canario de Investigaciones Agrarias (ICIA), 38400 Puerto de la Cruz, Spain
| | - Francisco J Díaz-Peña
- Departamento de Biología Animal, Edafología y Geología, Universidad de La Laguna, 38200 San Cristóbal de La Laguna, Spain.
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Zhang G, Jia J, Zhao Q, Wang W, Wang D, Bai J. Seasonality and assembly of soil microbial communities in coastal salt marshes invaded by a perennial grass. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 331:117247. [PMID: 36642049 DOI: 10.1016/j.jenvman.2023.117247] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/15/2022] [Revised: 12/29/2022] [Accepted: 01/04/2023] [Indexed: 06/17/2023]
Abstract
Plant invasion profoundly changes the microbial-driven processes in the ecosystem; however, the seasonality of soil microbial communities and their assembly under plant invasion is poorly understood. In this study, coastal salt marshes with native Suaeda salsa (L.) Pall. and exotic Spartina alterniflora Loisel. in the Yellow River Estuary, North China, were selected, and soil bacterial and fungal communities and their seasonal variance were characterized by metabarcoding sequencing of the 16S rRNA gene and ITS2 regions, respectively. The importance of deterministic and stochastic processes in shaping bacterial and fungal seasonal assembly was explored by the null model. Results showed that soil microbes exhibited the lowest diversities in spring, while their diversity significantly improved in summer and autumn with the increase in organic carbon and nitrogen content in soils. Strong seasonal variances in microbial communities were observed, but plant invasion reduced the seasonal variation strength of soil bacteria. For the microbial assembly, the seasonal variability of soil bacterial community was mainly controlled by homogeneous selection, whereas soil fungal community was dominantly structured by stochastic processes. Among the selected variables, soil pH was the key abiotic factor driving the seasonal changes in bacteria and fungi. The microbial function annotation derived from taxonomy-based inference suggested that carbon metabolism was relatively stronger in spring, but nitrogen and sulfur metabolism increased evidently in summer and autumn, and the proportion of saprophytic fungi increased substantially after plant invasion. The seasonal turnover of bacterial and fungal groups were tightly associated with the seasonal variation in soil carbon and nitrogen contents. Collectively, these findings reveal the strong seasonal variability of different soil microbial constituents in plant-invaded coastal salt marshes and suggest the linkage between microbial community assembly and microbial-mediated functions in the context of plant invasions.
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Affiliation(s)
- Guangliang Zhang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China; Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, 519087, PR China
| | - Jia Jia
- Henan Key Laboratory of Ecological Environment Protection and Restoration of Yellow River Basin, Yellow River Institute of Hydraulic Research, Zhengzhou, 45003, PR China
| | - Qingqing Zhao
- Shandong Provincial Key Laboratory of Applied Microbiology, Ecology Institute, Qilu University of Technology (Shandong Academy of Sciences), Ji'nan, 250103, PR China
| | - Wei Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China
| | - Dawei Wang
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China
| | - Junhong Bai
- State Key Laboratory of Water Environment Simulation, School of Environment, Beijing Normal University, Beijing, 100875, PR China; Shandong Key Laboratory of Eco-Environmental Science for the Yellow River Delta, Binzhou University, Binzhou, 256600, PR China.
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Fallopia japonica and Impatiens glandulifera are colonized by species-poor root-associated fungal communities but have minor impacts on soil properties in riparian habitats. Biol Invasions 2023. [DOI: 10.1007/s10530-023-03034-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2023]
Abstract
AbstractFallopia japonica and Impatiens glandulifera are major plant invaders on a global scale that often become dominant in riparian areas. However, little is known about how these species affect interactions in soil–plant systems. The aim of this study was to investigate the impact of both species on abiotic and biotic soil properties, with a special focus on fungi. We investigated eight sites along small streams invaded by F. japonica and I. glandulifera, respectively, and compared each with nearby sites dominated by the native species Urtica dioica. Three different types of samples were collected: bulk soil, rhizosphere soil and roots from invasive and native stands at each site. Bulk soil samples were analysed for soil physicochemical, microbial properties (soil microbial respiration and ergosterol) and soil arthropod abundance (Acari and Collembola). Soil respiration was also evaluated in rhizosphere samples. The fungal community composition of both bulk soil and roots were analysed using a metabarcoding approach. Soil physicochemical properties as well as soil microbial activity, fungal biomass and soil fungal operational unit taxonomic unit (OTU) richness did not differ between invaded and native riparian habitats, indicating only minor belowground impacts of the two invasive plant species. Soil microbial activity, fungal biomass and soil fungal OTU richness were rather related to the soil physicochemical properties. In contrast, Acari abundance decreased by 68% in the presence of F. japonica, while Collembola abundance increased by 11% in I. glandulifera sites. Moreover, root-associated fungal communities differed between the invasive and native plants. In F. japonica roots, fungal OTU richness of all investigated ecological groups (mycorrhiza, endophytes, parasites, saprobes) were lower compared to U. dioica. However, in I. glandulifera roots only the OTU richness of mycorrhiza and saprobic fungi was lower. Overall, our findings show that F. japonica and I. glandulifera can influence the abundance of soil arthropods and are characterized by lower OTU richness of root-associated fungi.
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Effects of Invasive Plant Diversity on Soil Microbial Communities. DIVERSITY 2022. [DOI: 10.3390/d14110992] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
Abstract
Native plant communities can be invaded by different numbers of alien plant species or by the same number of alien plant species with different levels of evenness. However, little is known about how alien invasive plant species richness and evenness affect soil microbial communities. We constructed native herbaceous plant communities invaded by exotic plants with different richness (1, 2, 4 and 8 species) and evenness (high and low) and analyzed soil physico-chemical properties and the diversity and composition of soil fungal and bacterial communities by high-throughput Illumina sequencing. Overall, the species richness and evenness of invasive plants had no significant effect on bacterial and fungal alpha diversity (OTUs, Shannon, Simpson, Chao1 and ACE) or the soil physico-chemical properties. However, invasive species richness had a significant impact on the relative abundance of the most dominant fungi, Ascomycota and Bipolaris, and the dominant bacteria, Actinobacteriota, which increased with increasing invasive species richness. The relative abundance of the dominant microbial groups was significantly correlated with the relative abundance of some specific invasive plants in the community. This study sheds new light on the effects of plant co-invasion on soil microbial communities, which may help us understand the underlying mechanisms of multiple alien plant invasion processes from the perspective of soil microorganisms.
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Li C, Bo H, Song B, Chen X, Cao Q, Yang R, Ji S, Wang L, Liu J. Reshaping of the soil microbiome by the expansion of invasive plants: shifts in structure, diversity, co-occurrence, niche breadth, and assembly processes. PLANT AND SOIL 2022; 477:629-646. [DOI: 10.1007/s11104-022-05445-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 04/12/2022] [Indexed: 06/14/2024]
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Xu H, Liu Q, Wang S, Yang G, Xue S. A global meta-analysis of the impacts of exotic plant species invasion on plant diversity and soil properties. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 810:152286. [PMID: 34902405 DOI: 10.1016/j.scitotenv.2021.152286] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2021] [Revised: 11/29/2021] [Accepted: 12/05/2021] [Indexed: 06/14/2023]
Abstract
Plant diversity and biogeochemical cycles are rapidly changing in response to exotic plant species invasion. However, there are conflicting conclusions regarding the quantification of such changes in the soil properties and plant diversity. Moreover, the relationships between soil properties and plant diversity are unclear. Here, a global meta-analysis was conducted on the impact of exotic species invasion on soil physicochemistry, microbial activity, and plant diversity using data from 123 published reports and 332 samples. Exotic species invasion significantly enhanced the soil pH, soil microbial activity, and soil nutrient content. The impact was more substantial for grass than for shrub and tree. Exotic species invasion did not significantly affect soil texture, but significantly reduced the plant diversity, richness, and evenness by 36.97%, 64.72%, and 47.21%, respectively. Soil pH, soil organic carbon, and total nitrogen were significantly correlated with plant diversity reduction. The response ratio of plant richness and evenness gradually increased with precipitation. However, the response ratio of phosphatase, microbial biomass nitrogen, microbial biomass phosphorus, total nitrogen, and soil moisture gradually decreased with precipitation. Overall, exotic species invasion significantly increased the soil nutrient content and soil microbial activity, but significantly decreased plant diversity. These effects were influenced by exotic species types and precipitation.
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Affiliation(s)
- Hongwei Xu
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling 712100, PR China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China.
| | - Qiang Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling 712100, PR China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, PR China; University of Chinese Academy of Sciences, Beijing 100049, PR China
| | - Shaoyong Wang
- University of Chinese Academy of Sciences, Beijing 100049, PR China; Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, PR China
| | - Guisen Yang
- University of Chinese Academy of Sciences, Beijing 100049, PR China; Northwest Institute of Eco-Environment and Resources, Chinese Academy of Sciences, Lanzhou 730000, PR China
| | - Sha Xue
- State Key Laboratory of Soil Erosion and Dryland Farming on Loess Plateau, Institute of Soil and Water Conservation, Chinese Academy of Sciences and Ministry of Water Resources, Yangling 712100, PR China; Institute of Soil and Water Conservation, Northwest A & F University, Yangling, 712100, PR China.
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Yang B, Balazs KR, Butterfield BJ, Laushman KM, Munson SM, Gornish ES, Barberán A. Does restoration of plant diversity trigger concomitant soil microbiome changes in dryland ecosystems? J Appl Ecol 2021. [DOI: 10.1111/1365-2664.14074] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Ben Yang
- Department of Environmental Science University of Arizona Tucson AZ USA
| | - Kathleen R. Balazs
- Department of Biological Sciences Northern Arizona University Flagstaff AZ USA
- Center for Ecosystem Science and Society Northern Arizona University Flagstaff AZ USA
| | - Bradley J. Butterfield
- Department of Biological Sciences Northern Arizona University Flagstaff AZ USA
- Center for Ecosystem Science and Society Northern Arizona University Flagstaff AZ USA
| | | | - Seth M. Munson
- U.S. Geological Survey Southwest Biological Science Center Flagstaff AZ USA
| | - Elise S. Gornish
- University of Arizona School of Natural Resources and the Environment Tucson AZ USA
| | - Albert Barberán
- Department of Environmental Science University of Arizona Tucson AZ USA
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Yang R, Li K, Fang J, Quan Q, Zhang C, Liu J. The Invasion of Alternanthera philoxeroides Increased Soil Organic Carbon in a River and a Constructed Wetland With Different Mechanisms. Front Ecol Evol 2020; 8. [DOI: 10.3389/fevo.2020.574528] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024] Open
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