Circumtropical distribution and cryptic species of the meiofaunal enteropneust Meioglossus (Harrimaniidae, Hemichordata)

Hemichordata has always played a central role in evolutionary studies of Chordata due to their close phylogenetic affinity and shared morphological characteristics. Hemichordates had no meiofaunal representatives until the surprising discovery of a microscopic, paedomorphic enteropneust Meioglossus psammophilus (Harrimaniidae, Hemichordata) from the Caribbean in 2012. No additional species have been described since, questioning the broader distribution and significance of this genus. However, being less than a millimeter long and superficially resembling an early juvenile acorn worm, Meioglossus may easily be overlooked in both macrofauna and meiofauna surveys. We here present the discovery of 11 additional populations of Meioglossus from shallow subtropical and tropical coralline sands of the Caribbean Sea, Red Sea, Indian Ocean, and East China Sea. These geographically separated populations show identical morphology but differ genetically. Our phylogenetic reconstructions include four gene markers and support the monophyly of Meioglossus. Species delineation analyses revealed eight new cryptic species, which we herein describe using DNA taxonomy. This study reveals a broad circumtropical distribution, supporting the validity and ecological importance of this enigmatic meiobenthic genus. The high cryptic diversity and apparent morphological stasis of Meioglossus may exemplify a potentially common evolutionary 'dead-end' scenario, where groups with highly miniaturized and simplified body plan lose their ability to diversify morphologically.

Taxonomic and functional nematode diversity in Maldivian coral degradation zones: patterns across reef typologies and depths

The intensification of dredging and infilling activities in lagoons and on coral reefs are common practices in the Maldivian archipelago, and these activities alter the biodiversity of the bioconstructors and the functioning of the ecosystem. The alteration of environmental factors can also affect inconspicuous fauna, such as free-living nematodes. The implications of a reduction in biodiversity may transcend decreased taxonomic diversity, resulting in changes in functional diversity and redundancy; however, how the environmental conditions and human pressure affects the functionality of nematodes in Maldivian coral degradation zones (CDZs) remain poorly understood. In this paper, we examined changes in the taxonomic and functional diversity and the functional redundancy in nematode communities regarding the geographic location (atolls with various levels of human pressure), the exposure and topography of the reef (lagoon and ocean), the slope of the reef, and the depth. The functional diversity and redundancy were evaluated by considering two main biological traits of nematodes: i) the trophic strategy, and ii) the life strategy. The extremely high number of nematode genera observed in the Maldives is supported by the high complexity of the carbonate sediments. The reef exposure and depth were the most relevant environmental factors that influenced the taxonomic and functional diversity. The functional diversity, according to the trophic strategies, mirrored the taxonomic diversity because the adaptive plasticity of nematode buccal cavity structures is closely associated with the high biodiversity of the phylum. The high abundance of k-strategists in ocean reefs may indicate a higher ecological quality when compared to lagoon reefs; however, the absence of significant differences in life strategy functional diversity and functional redundancy indicates that a recovery process is underway. Analyses of nematode communities should be combined with standard investigations of reef bioconstructors during monitoring activities to assess the vulnerability of CDZ systems to future disturbances and facilitate the adoption of the most appropriate preventative actions.

Detection and population genomics of sea turtle species via non-invasive environmental DNA analysis of nesting beach sand tracks and oceanic water

Elusive aquatic wildlife, such as endangered sea turtles, are difficult to monitor and conserve. As novel molecular and genetic technologies develop, it is possible to adapt and optimize them for wildlife conservation. One such technology is environmental (e)DNA - the detection of DNA shed from organisms into their surrounding environments. We developed species-specific green (Chelonia mydas) and loggerhead (Caretta caretta) sea turtle probe-based qPCR assays, which can detect and quantify sea turtle eDNA in controlled (captive tank water and sand samples) and free ranging (oceanic water samples and nesting beach sand) settings. eDNA detection complemented traditional in-water sea turtle monitoring by enabling detection even when turtles were not visually observed. Furthermore, we report that high throughput shotgun sequencing of eDNA sand samples enabled sea turtle population genetic studies and pathogen monitoring, demonstrating that non-invasive eDNA techniques are viable and efficient alternatives to biological sampling (e.g. biopsies and blood draws). Genetic information was obtained from sand many hours after nesting events, without having to observe or interact with the target individual. This greatly reduces the sampling stress experienced by nesting mothers and emerging hatchlings, and avoids sacrificing viable eggs for genetic analysis. The detection of pathogens from sand indicates significant potential for increased wildlife disease monitoring capacity and viral variant surveillance. Together, these results demonstrate the potential of eDNA approaches to ultimately help understand and conserve threatened species such as sea turtles.

Sea Turtle Epibiosis: Global Patterns and Knowledge Gaps

Competition for space drives many marine propagules to colonize the external surfaces of other marine organisms, a phenomenon known as epibiosis. Epibiosis appears to be a universal phenomenon among sea turtles and an extensive body of scientific literature exists describing sea turtle-epibiont interactions. When viewed in isolation, however, these epibiont “species lists” provide limited insights into the factors driving patterns in taxonomic diversity on a global scale. We conducted an exhaustive literature review to collate information on sea turtle-epibiont interactions into a global database. As studies involving meio- and micro-epibionts, as well as plants, are limited, we exclusively focused on animal, macro-epibionts (>1 mm). We identified 304 studies that included a combined total of 1,717 sea turtle-epibiont interactions involving 374 unique epibiont taxa from 23 Higher Taxon categories (full Phylum or select phyla differentiated by Subphylum/Class/Subclass). We found that loggerhead turtles hosted the highest taxonomic richness (262 epibiont taxa) and diversity, including representative taxa from 21 Higher Taxon categories, followed by hawksbill, green, olive ridley, leatherback, Kemp’s ridley, and flatback turtles. In addition, the taxonomic richness for all turtle species except leatherbacks was projected to increase with additional studies. We found that taxonomic richness not only varies between species but also between well-studied populations of loggerhead turtles. Lastly, we assessed biases in the current literature and identified knowledge gaps for certain species (e.g., Kemp’s ridleys and flatbacks), life stages (e.g., juveniles), habitats (e.g., oceanic habitats), and geographic regions (e.g., central Pacific, east Atlantic, and east Indian oceans). Our hope is that this database will serve as a foundational platform for future studies investigating global patterns of the diversity, ecological function, and evolutionary origins of sea turtle epibiosis.

Epibiont Assemblages on Nesting Hawksbill Turtles Show Site-Specificity in the Persian Gulf

Sea turtle epibionts can provide insights into the hosts' habitat use. However, at present, there is a lack of information on sea turtle epibiont communities in many locations worldwide. Here, we describe the epibiont communities of 46 hawksbill turtles (Eretmochelys imbricata) in the Persian Gulf. Specifically, we sampled 28 turtles from the Dayyer-Nakhiloo National Park (DNNP) in the northern Gulf and 18 turtles from Shibderaz beach in the Strait of Hormuz. A total of 54 macro, meio, and micro-epibiont taxa were identified, including 46 taxa from Shibderaz and 29 taxa from DNNP. The barnacles Chelonibia testudinaria and Platylepas hexastylos, as well as harpacticoid copepods and Rotaliid foraminifers, had the highest frequency of occurrence found on almost all turtle individuals. Harpacticoids were the most abundant epizoic taxa (19.55 ± 3.9 ind. per 9 cm2) followed by forams (Quinqueloculina spp.: 6.25 ± 1.5 ind. per 9 cm2 and Rotaliids: 6.02 ± 1.3 ind. per 9 cm2). Our results showed significant differences between the study sites in the composition of micro and macro-epibiont communities found on hawksbill turtles. We speculate that the differences in epibiont communities were largely influenced by local environmental conditions.

What is the difference between marine and limnetic-terrestrial associations of nematodes with invertebrates?

Zoo- and phyto-parasitic nematodes of the order Rhabditida and zooparasites of the subclass Dorylaimia are well known, due largely to their medical, veterinarian and agricultural significance. However, there have been many switches from a free-living to a symbiotic (including parasitism) mode of existence in the evolutionary trajectories of various nematode clades. Here, we attempt to summarize all known cases of symbioses (from commensalism to true parasitism) between marine nematodes representing nonparasitic taxa and various larger animals, ranging from protists to vertebrates. Most cases are of nematodes relating to dwelling on crustaceans (ectocommensalism) or living in the body cavity and internal organs of various invertebrates (endoparasitism or parasitoidism). Ectocommensal species may differ from their free-living relatives in their longer filiform bodies and enlarged ventral and caudal glands, which may be interpreted as adaptations for the purpose of fixation on the body surface of a motile host. Endoparasitic species are characterized by deep anatomical modification, including rudimentation of the alimentary tract and hypertrophy of reproductive organs. Unlike terrestrial and limnetic invertebrates, marine invertebrates have almost no intestinal nematode dwellers. The evolutionary trajectories of nematode dwellers of marine and nonmarine invertebrates are compared.

Epibionts Reflect Spatial and Foraging Ecology of Gulf of Mexico Loggerhead Turtles (Caretta caretta)

Sea turtles are exposed to numerous threats during migrations to their foraging grounds and at those locations. Therefore, information on sea turtle foraging and spatial ecology can guide conservation initiatives, yet it is difficult to directly observe migrating or foraging turtles. To gain insights into the foraging and spatial ecology of turtles, studies have increasingly analyzed epibionts of nesting turtles, as epibionts must overlap spatially and ecologically with their hosts to colonize successfully. Epibiont analysis may be integrated with stable isotope information to identify taxa that can serve as indicators of sea turtle foraging and spatial ecology, but few studies have pursued this. To determine if epibionts can serve as indicators of foraging and spatial ecology of loggerhead turtles nesting in the northern Gulf of Mexico we combined turtle stable isotope and taxonomic epibiont analysis. We sampled 22 individual turtles and identified over 120,000 epibiont individuals, belonging to 34 macrofauna taxa (>1 mm) and 22 meiofauna taxa (63 μm–1 mm), including 111 nematode genera. We quantified epidermis δ13C and δ15N, and used these to assign loggerhead turtles to broad foraging regions. The abundance and presence of macrofauna and nematodes did not differ between inferred foraging regions, but the presence of select meiofauna taxa differentiated between three inferred foraging regions. Further, dissimilarities in macrofauna, meiofauna, and nematode assemblages corresponded to dissimilarities in individual stable isotope values within inferred foraging regions. This suggests that certain epibiont taxa may be indicative of foraging regions used by loggerhead turtles in the Gulf of Mexico, and of individual turtle foraging and habitat use specialization within foraging regions. Continued sampling of epibionts at nesting beaches and foraging grounds in the Gulf of Mexico and globally, coupled with satellite telemetry and/or dietary studies, can expand upon our findings to develop epibionts as efficient indicators of sea turtle foraging and spatial ecology.

Diversity of Epibionts Associated with Lepidochelys olivacea (Eschscholtz 1829) Sea Turtles Nesting in the Mexican South Pacific

Simple Summary

Epibionts are organisms that live or grow attached to other living beings, and sea turtles can be suitable habitat for these organisms because they provide a large and diverse substrate. They usually have interspecific relationships of the commensal type; however, some species become parasitic and may cause severe damage, mainly in soft areas. Epibionts provide us with information on the migratory habits of sea turtles and can indicate health status. There are several studies on epibionts and their relationships with sea turtles; however, it is essential to expand research to increase the knowledge that will allow us to comprehend these relationships and their implications. In this study, we analyze the richness, abundance, diversity, prevalence, body distribution, and interspecific relationships of epibionts with Lepidochelys olivacea turtles nesting in the Mexican South Pacific, relate turtle size with the presence of epibionts, characterize the body distribution of epibionts, determine the affinity in species composition, and document the interspecific relationships.

Abstract

The present study contributes to the knowledge of epibionts recorded on sea turtles that nested on a beach in the South Pacific of Mexico. A total of 125 Lepidochelys olivacea turtles nested on Llano Real beach, Guerrero, Mexico, were examined. We collected 450 conspicuous organisms from 8 species from 43 turtles. The corresponding data analysis was carried out to obtain the relative abundance, the relationship between turtle sizes and the presence of organisms, the similarity of species between the sampling months, and the interspecific relationships between the epibionts and the turtles observed. Chelonibia testudinaria was the most abundant species, while Remora remora was the least abundant species. The turtles were divided into six body sections, with the greatest abundance of these organisms located in the head–neck section of turtles, and there was a significant difference in the size of the turtles that presented epibionts and those that did not. C. testudinaria showed greater similarity between sampling months, and the interspecific relationships recorded were commensalism, parasitism, amensalism, and protocooperation. This research contributes the first record of epibionts in L. olivacea nesting in Guerrero, Mexico.

Colonization of macroalgal deposits by estuarine nematodes through air and potential for rafting inside algal structures

Dispersal is an important life-history trait. In marine meiofauna, and particularly in nematodes, dispersal is generally considered to be mainly passive, i.e. through transport with water currents and bedload transport. Because nematodes have no larval dispersal stage and have a poor swimming ability, their per capita dispersal capacity is expected to be limited. Nevertheless, many marine nematode genera and even species have near-cosmopolitan distributions, and at much smaller spatial scales, can rapidly colonise new habitat patches. Here we demonstrate that certain marine nematodes, like the morphospecies Litoditis marina, can live inside macroalgal structures such as receptacula and-to a lesser extent-floating bladders, which may allow them to raft over large distances with drifting macroalgae. We also demonstrate for the first time that these nematodes can colonize new habitat patches, such as newly deposited macroalgal wrack in the intertidal, not only through seawater but also through air. Our experimental set-up demonstrates that this aerial transport is probably the result of hitchhiking on vectors such as insects, which visit, and move between, the patches of deposited algae. Transport by wind, which has been observed for terrestrial nematodes and freshwater zooplankton, could not be demonstrated. These results can be important for our understanding of both large-scale geographic distribution patterns and of the small-scale colonization dynamics of habitat patches by marine nematodes.

Nematode epibionts on skin of the Florida manatee, Trichechus manatus latirostris

A survey for the presence of nematodes on the skin of the native Florida manatee, Trichechus manatus latirostris from Crystal River, Florida was conducted during annual manatee health assessments. A putative isolate of Cutidiplogaster manati (Diplogastridae) and two other nematodes belonging to the same family were recovered from mid-dorsal tail skin-scrapings from all sampled winter-collected healthy wild adult manatees during two successive years (2018–2019). Qualitative abundance estimates of these three species of diplogastrid nematodes suggest that an average wild Florida manatee adult might possess between 30,000 and 120,000 nematodes on its tail dorsum and that the entire body dorsum including the tail might possess 160,000–640,000 nematodes in roughly equal ratios. Attempts to culture these nematodes on a variety of different culture media were unsuccessful but examination of the mouth (stomatal) morphology suggests specialized feeding on microbes such as diatoms or predation on other nematodes. No skin lesions were observed during the 2018–2019 samplings suggesting that under normal conditions these nematodes are highly specialized free-living epibionts of the skin that are tightly bound to this niche and horizontally transferred between individual manatees in an analogous fashion to human skin mites (Demodex folliculorum and D. brevis). Molecular phylogenetic inferences using sequences of near full length SSU and D2–D3 expansion segments of LSU rRNA genes revealed a putative new morphospecies in Cutidiplogaster sister to C. manati that was monophyletic with several named Mononchoides species, and another putative new morphospecies that formed a clade with several undescribed species similar in appearance to Mononchoides as well as Tylopharyx, Eudiplogasterium, Paroigolaimella and Sachsia.

Diatom Diversity on the Skin of Frozen Historic Loggerhead Sea Turtle Specimens

In recent years, biofilm-forming diatoms have received increased attention as sea turtle epibionts. However, most of the research has focused on carapace-associated taxa and communities, while less is known about diatoms growing on sea turtle skin. The current study investigated diatom diversity on the skin of loggerhead sea turtle heads detached from the carcasses found along the Adriatic coast between 1995 and 2004 and stored frozen for a prolonged period of time. By using both light and scanning electron microscopy we have found diatom frustules in 7 out of 14 analysed sea turtle samples. Altogether, 113 diatom taxa were recorded, with a minimum of seven and a maximum of 35 taxa per sample. Eight taxa, Achnanthes elongata, Berkeleya cf. fennica, Chelonicola sp., Licmophora hyalina, Nagumoea sp., Navicula sp., Nitzschia cf. lanceolata, and Poulinea lepidochelicola exceeded 5% of relative abundance in any one sample. The presumably obligately epizoic diatom taxa, A. elongata, Chelonicola sp., and P. lepidochelicola, dominated in six loggerhead samples, contributing up to 97.1% of the total diatom abundance. These observations suggest that on the sea turtle skin highly specialised taxa gain even greater ecological advantage and dominance over the co-occurring benthic forms than in the carapace biofilms. The suitability of frozen sea turtle skin specimens for diatom analysis and limitations of this approach are discussed.