Isolated Convolutional-Neural-Network-Based Deep-Feature Extraction for Brain Tumor Classification Using Shallow Classifier

Enhancing Alzheimer's disease diagnosis and staging: a multistage CNN framework using MRI

This study addresses the pervasive and debilitating impact of Alzheimer's disease (AD) on individuals and society, emphasizing the crucial need for timely diagnosis. We present a multistage convolutional neural network (CNN)-based framework for AD detection and sub-classification using brain magnetic resonance imaging (MRI). After preprocessing, a 26-layer CNN model was designed to differentiate between healthy individuals and patients with dementia. After detecting dementia, the 26-layer CNN model was reutilized using the concept of transfer learning to further subclassify dementia into mild, moderate, and severe dementia. Leveraging the frozen weights of the developed CNN on correlated medical images facilitated the transfer learning process for sub-classifying dementia classes. An online AD dataset is used to verify the performance of the proposed multistage CNN-based framework. The proposed approach yielded a noteworthy accuracy of 98.24% in identifying dementia classes, whereas it achieved 99.70% accuracy in dementia subclassification. Another dataset was used to further validate the proposed framework, resulting in 100% performance. Comparative evaluations against pre-trained models and the current literature were also conducted, highlighting the usefulness and superiority of the proposed framework and presenting it as a robust and effective AD detection and subclassification method.

Application of Machine Learning for Classification of Brain Tumors: A Systematic Review and Meta-Analysis

BACKGROUND

Classifying brain tumors accurately is crucial for treatment and prognosis. Machine learning (ML) shows great promise in improving tumor classification accuracy. This study evaluates ML algorithms for differentiating various brain tumor types.

METHODS

A systematic review and meta-analysis were conducted, searching PubMed, Embase, and Web of Science up to March 14, 2023. Studies that only investigated image segmentation accuracy or brain tumor detection instead of classification were excluded. We extracted binary diagnostic accuracy data, constructing contingency tables to derive sensitivity and specificity.

RESULTS

Fifty-one studies were included. The pooled area under the curve for glioblastoma versus lymphoma and low-grade versus high-grade gliomas were 0.99 (95% confidence interval [CI]: 0.98-1.00) and 0.89, respectively. The pooled sensitivity and specificity for benign versus malignant tumors were 0.90 (95% CI: 0.85-0.93) and 0.93 (95% CI: 0.90-0.95), respectively. The pooled sensitivity and specificity for low-grade versus high-grade gliomas were 0.99 (95% CI: 0.97-1.00) and 0.94, (95% CI: 0.79-0.99), respectively. Primary versus metastatic tumor identification yields sensitivity and specificity of 0.89, (95% CI: 0.83-0.93) and 0.87 (95% CI: 0.82-0.91), correspondingly. The differentiation of gliomas from pituitary tumors yielded the highest results among primary brain tumor classifications: sensitivity of 0.99 (95% CI: 0.99-1.00) and specificity of 0.99 (95% CI: 0.98-1.00).

CONCLUSIONS

ML demonstrated excellent performance in classifying brain tumor images, with near-maximum area under the curves, sensitivity, and specificity.

TTDCapsNet: Tri Texton-Dense Capsule Network for complex and medical image recognition

Convolutional Neural Networks (CNNs) are frequently used algorithms because of their propensity to learn relevant and hierarchical features through their feature extraction technique. However, the availability of enormous volumes of data in various variations is crucial for their performance. Capsule networks (CapsNets) perform well on a small amount of data but perform poorly on complex images. To address this, we proposed a new Capsule Network architecture called Tri Texton-Dense CapsNet (TTDCapsNet) for better complex and medical image classification. The TTDCapsNet is made up of three hierarchic blocks of Texton-Dense CapsNet (TDCapsNet) models. A single TDCapsNet is a CapsNet architecture composed of a texton detection layer to extract essential features, which are passed onto an eight-layered block of dense convolution that further extracts features, and then the output feature map is given as input to a Primary Capsule (PC), and then to a Class Capsule (CC) layer for classification. The resulting feature map from the first PC serves as input into the second-level TDCapsNet, and that from the second PC serves as input into the third-level TDCapsNet. The routing algorithm receives feature maps from each PC for the various CCs. Routing the concatenation of the three PCs creates an additional CC layer. All these four feature maps combined, help to achieve better classification. On fashion-MNIST, CIFAR-10, Breast Cancer, and Brain Tumor datasets, the proposed model is evaluated and achieved validation accuracies of 94.90%, 89.09%, 95.01%, and 97.71% respectively. Findings from this work indicate that TTDCapsNet outperforms the baseline and performs comparatively well with the state-of-the-art CapsNet models using different performance metrics. This work clarifies the viability of using Capsule Network on complex tasks in the real world. Thus, the proposed model can be used as an intelligent system, to help oncologists in diagnosing cancerous diseases and administering treatment required.

Advances in the Use of Deep Learning for the Analysis of Magnetic Resonance Image in Neuro-Oncology

Machine Learning is entering a phase of maturity, but its medical applications still lag behind in terms of practical use. The field of oncological radiology (and neuro-oncology in particular) is at the forefront of these developments, now boosted by the success of Deep-Learning methods for the analysis of medical images. This paper reviews in detail some of the most recent advances in the use of Deep Learning in this field, from the broader topic of the development of Machine-Learning-based analytical pipelines to specific instantiations of the use of Deep Learning in neuro-oncology; the latter including its use in the groundbreaking field of ultra-low field magnetic resonance imaging.

Tracking Therapy Response in Glioblastoma Using 1D Convolutional Neural Networks

BACKGROUND

Glioblastoma (GB) is a malignant brain tumour that is challenging to treat, often relapsing even after aggressive therapy. Evaluating therapy response relies on magnetic resonance imaging (MRI) following the Response Assessment in Neuro-Oncology (RANO) criteria. However, early assessment is hindered by phenomena such as pseudoprogression and pseudoresponse. Magnetic resonance spectroscopy (MRS/MRSI) provides metabolomics information but is underutilised due to a lack of familiarity and standardisation.

METHODS

This study explores the potential of spectroscopic imaging (MRSI) in combination with several machine learning approaches, including one-dimensional convolutional neural networks (1D-CNNs), to improve therapy response assessment. Preclinical GB (GL261-bearing mice) were studied for method optimisation and validation.

RESULTS

The proposed 1D-CNN models successfully identify different regions of tumours sampled by MRSI, i.e., normal brain (N), control/unresponsive tumour (T), and tumour responding to treatment (R). Class activation maps using Grad-CAM enabled the study of the key areas relevant to the models, providing model explainability. The generated colour-coded maps showing the N, T and R regions were highly accurate (according to Dice scores) when compared against ground truth and outperformed our previous method.

CONCLUSIONS

The proposed methodology may provide new and better opportunities for therapy response assessment, potentially providing earlier hints of tumour relapsing stages.

BU-DLNet: Breast Ultrasonography-Based Cancer Detection Using Deep-Learning Network Selection and Feature Optimization

Early detection of breast lesions and distinguishing between malignant and benign lesions are critical for breast cancer (BC) prognosis. Breast ultrasonography (BU) is an important radiological imaging modality for the diagnosis of BC. This study proposes a BU image-based framework for the diagnosis of BC in women. Various pre-trained networks are used to extract the deep features of the BU images. Ten wrapper-based optimization algorithms, including the marine predator algorithm, generalized normal distribution optimization, slime mold algorithm, equilibrium optimizer (EO), manta-ray foraging optimization, atom search optimization, Harris hawks optimization, Henry gas solubility optimization, path finder algorithm, and poor and rich optimization, were employed to compute the optimal subset of deep features using a support vector machine classifier. Furthermore, a network selection algorithm was employed to determine the best pre-trained network. An online BU dataset was used to test the proposed framework. After comprehensive testing and analysis, it was found that the EO algorithm produced the highest classification rate for each pre-trained model. It produced the highest classification accuracy of 96.79%, and it was trained using only a deep feature vector with a size of 562 in the ResNet-50 model. Similarly, the Inception-ResNet-v2 had the second highest classification accuracy of 96.15% using the EO algorithm. Moreover, the results of the proposed framework are compared with those in the literature.

WBM-DLNets: Wrapper-Based Metaheuristic Deep Learning Networks Feature Optimization for Enhancing Brain Tumor Detection

This study presents wrapper-based metaheuristic deep learning networks (WBM-DLNets) feature optimization algorithms for brain tumor diagnosis using magnetic resonance imaging. Herein, 16 pretrained deep learning networks are used to compute the features. Eight metaheuristic optimization algorithms, namely, the marine predator algorithm, atom search optimization algorithm (ASOA), Harris hawks optimization algorithm, butterfly optimization algorithm, whale optimization algorithm, grey wolf optimization algorithm (GWOA), bat algorithm, and firefly algorithm, are used to evaluate the classification performance using a support vector machine (SVM)-based cost function. A deep-learning network selection approach is applied to determine the best deep-learning network. Finally, all deep features of the best deep learning networks are concatenated to train the SVM model. The proposed WBM-DLNets approach is validated based on an available online dataset. The results reveal that the classification accuracy is significantly improved by utilizing the features selected using WBM-DLNets relative to those obtained using the full set of deep features. DenseNet-201-GWOA and EfficientNet-b0-ASOA yield the best results, with a classification accuracy of 95.7%. Additionally, the results of the WBM-DLNets approach are compared with those reported in the literature.

Blockchain-Based Deep CNN for Brain Tumor Prediction Using MRI Scans

Brain tumors are nonlinear and present with variations in their size, form, and textural variation; this might make it difficult to diagnose them and perform surgical excision using magnetic resonance imaging (MRI) scans. The procedures that are currently available are conducted by radiologists, brain surgeons, and clinical specialists. Studying brain MRIs is laborious, error-prone, and time-consuming, but they nonetheless show high positional accuracy in the case of brain cells. The proposed convolutional neural network model, an existing blockchain-based method, is used to secure the network for the precise prediction of brain tumors, such as pituitary tumors, meningioma tumors, and glioma tumors. MRI scans of the brain are first put into pre-trained deep models after being normalized in a fixed dimension. These structures are altered at each layer, increasing their security and safety. To guard against potential layer deletions, modification attacks, and tempering, each layer has an additional block that stores specific information. Multiple blocks are used to store information, including blocks related to each layer, cloud ledger blocks kept in cloud storage, and ledger blocks connected to the network. Later, the features are retrieved, merged, and optimized utilizing a Genetic Algorithm and have attained a competitive performance compared with the state-of-the-art (SOTA) methods using different ML classifiers.

Dendrimer: An update on recent developments and future opportunities for the brain tumors diagnosis and treatment

A brain tumor is an uncontrolled cell proliferation, a mass of tissue composed of cells that grow and divide abnormally and appear to be uncontrollable by the processes that normally control normal cells. Approximately 25,690 primary malignant brain tumors are discovered each year, 70% of which originate in glial cells. It has been observed that the blood-brain barrier (BBB) limits the distribution of drugs into the tumour environment, which complicates the oncological therapy of malignant brain tumours. Numerous studies have found that nanocarriers have demonstrated significant therapeutic efficacy in brain diseases. This review, based on a non-systematic search of the existing literature, provides an update on the existing knowledge of the types of dendrimers, synthesis methods, and mechanisms of action in relation to brain tumours. It also discusses the use of dendrimers in the diagnosis and treatment of brain tumours and the future possibilities of dendrimers. Dendrimers are of particular interest in the diagnosis and treatment of brain tumours because they can transport biochemical agents across the BBB to the tumour and into the brain after systemic administration. Dendrimers are being used to develop novel therapeutics such as prolonged release of drugs, immunotherapy, and antineoplastic effects. The use of PAMAM, PPI, PLL and surface engineered dendrimers has proven revolutionary in the effective diagnosis and treatment of brain tumours.

An Ensemble Model for the Diagnosis of Brain Tumors through MRIs

Automatic brain tumor detection in MR Images is one of the basic applications of machine vision in medical image processing, which, despite much research, still needs further development. Using multiple machine learning techniques as an ensemble system is one of the solutions that can be effective in achieving this goal. In this paper, a novel method for diagnosing brain tumors by combining data mining and machine learning techniques has been proposed. In the proposed method, each image is initially pre-processed to eliminate its background region and identify brain tissue. The Social Spider Optimization (SSO) algorithm is then utilized to segment the MRI Images. The MRI Images segmentation allows for a more precise identification of the tumor region in the image. In the next step, the distinctive features of the image are extracted using the SVD technique. In addition to removing redundant information, this strategy boosts the speed of the processing at the classification stage. Finally, a combination of the algorithms Naïve Bayes, Support vector machine and K-nearest neighbor is used to classify the extracted features and detect brain tumors. Each of the three algorithms performs feature classification individually, and the final output of the proposed model is created by integrating the three independent outputs and voting the results. The results indicate that the proposed method can diagnose brain tumors in the BRATS 2014 dataset with an average accuracy of 98.61%, sensitivity of 95.79% and specificity of 99.71%. Additionally, the proposed method could diagnose brain tumors in the BTD20 database with an average accuracy of 99.13%, sensitivity of 99% and specificity of 99.26%. These results show a significant improvement compared to previous efforts. The findings confirm that using the image segmentation technique, as well as the ensemble learning, is effective in improving the efficiency of the proposed method.

Role of Ensemble Deep Learning for Brain Tumor Classification in Multiple Magnetic Resonance Imaging Sequence Data

The biopsy is a gold standard method for tumor grading. However, due to its invasive nature, it has sometimes proved fatal for brain tumor patients. As a result, a non-invasive computer-aided diagnosis (CAD) tool is required. Recently, many magnetic resonance imaging (MRI)-based CAD tools have been proposed for brain tumor grading. The MRI has several sequences, which can express tumor structure in different ways. However, a suitable MRI sequence for brain tumor classification is not yet known. The most common brain tumor is 'glioma', which is the most fatal form. Therefore, in the proposed study, to maximize the classification ability between low-grade versus high-grade glioma, three datasets were designed comprising three MRI sequences: T1-Weighted (T1W), T2-weighted (T2W), and fluid-attenuated inversion recovery (FLAIR). Further, five well-established convolutional neural networks, AlexNet, VGG16, ResNet18, GoogleNet, and ResNet50 were adopted for tumor classification. An ensemble algorithm was proposed using the majority vote of above five deep learning (DL) models to produce more consistent and improved results than any individual model. Five-fold cross validation (K5-CV) protocol was adopted for training and testing. For the proposed ensembled classifier with K5-CV, the highest test accuracies of 98.88 ± 0.63%, 97.98 ± 0.86%, and 94.75 ± 0.61% were achieved for FLAIR, T2W, and T1W-MRI data, respectively. FLAIR-MRI data was found to be most significant for brain tumor classification, where it showed a 4.17% and 0.91% improvement in accuracy against the T1W-MRI and T2W-MRI sequence data, respectively. The proposed ensembled algorithm (MajVot) showed significant improvements in the average accuracy of three datasets of 3.60%, 2.84%, 1.64%, 4.27%, and 1.14%, respectively, against AlexNet, VGG16, ResNet18, GoogleNet, and ResNet50.

Multi-Stage Temporal Convolutional Network with Moment Loss and Positional Encoding for Surgical Phase Recognition

In recent times, many studies concerning surgical video analysis are being conducted due to its growing importance in many medical applications. In particular, it is very important to be able to recognize the current surgical phase because the phase information can be utilized in various ways both during and after surgery. This paper proposes an efficient phase recognition network, called MomentNet, for cholecystectomy endoscopic videos. Unlike LSTM-based network, MomentNet is based on a multi-stage temporal convolutional network. Besides, to improve the phase prediction accuracy, the proposed method adopts a new loss function to supplement the general cross entropy loss function. The new loss function significantly improves the performance of the phase recognition network by constraining un-desirable phase transition and preventing over-segmentation. In addition, MomnetNet effectively applies positional encoding techniques, which are commonly applied in transformer architectures, to the multi-stage temporal convolution network. By using the positional encoding techniques, MomentNet can provide important temporal context, resulting in higher phase prediction accuracy. Furthermore, the MomentNet applies label smoothing technique to suppress overfitting and replaces the backbone network for feature extraction to further improve the network performance. As a result, the MomentNet achieves 92.31% accuracy in the phase recognition task with the Cholec80 dataset, which is 4.55% higher than that of the baseline architecture.

A Robust Computer-Aided Automated Brain Tumor Diagnosis Approach Using PSO-ReliefF Optimized Gaussian and Non-Linear Feature Space

Brain tumors are among the deadliest diseases in the modern world. This study proposes an optimized machine-learning approach for the detection and identification of the type of brain tumor (glioma, meningioma, or pituitary tumor) in brain images recorded using magnetic resonance imaging (MRI). The Gaussian features of the image are extracted using speed-up robust features (SURF), whereas its non-linear features are obtained using KAZE, owing to their high performance against rotation, scaling, and noise problems. To retrieve local-level information, all brain MRI images are segmented into an 8 × 8 pixel grid. To enhance the accuracy and reduce the computational time, the variance-based k-means clustering and PSO-ReliefF algorithms are employed to eliminate the redundant features of the brain MRI images. Finally, the performance of the proposed hybrid optimized feature vector is evaluated using various machine learning classifiers. An accuracy of 96.30% is obtained with 169 features using a support vector machine (SVM). Furthermore, the computational time is also reduced to 1 min compared to the non-optimized features used for training of the SVM. The findings are also compared with previous research, demonstrating that the suggested approach might assist physicians and doctors in the timely detection of brain tumors.