UAVs in Support of Algal Bloom Research: A Review of Current Applications and Future Opportunities

Modeling dissolved organic carbon in inland waters using an unmanned aerial vehicles-borne hyperspectral camera

Remote sensing can provide an alternative solution to quantify Dissolved Organic Carbon (DOC) in inland waters. Sensors embedded on Unmanned Aerial Vehicles (UAV) and satellites that can capture the DOC have already shown good relationships between DOC and the Colored Dissolved Organic Matter absorption (aCDOM.) coefficients in specific spectral regions. However, since the signal recorded by the sensors is reflectance-based, DOC estimates accuracy decreases when inverting the aCDOM. coefficients to reflectance. Thus, the main objective is to study the potential of a UAV-borne hyperspectral camera to retrieve the DOC in inland waters and to develop reflectance-based models using UAV and satellite (Landsat-8 OLI and Sentinel-2 MSI) data. Ensemble based systems (EBS) were favored in this study. The EBSUAV calibration results showed that six spectral regions (543.5, 564.5, 580.5, 609.5, 660, and 684 nm) are sensitive to DOC in waters. The EBSUAV test results showed a good concordance between measured and estimated DOC with an R2 = Nash-criterion (NASH) = 0.86, and RMSE (Root Mean Squares Error) = 0.68 mg C/L. The EBSSAT test results also showed a strong concordance between measured and estimated DOC with R2 = NASH = 0.92 and RMSE = 0.74 mg C/L. The spatial distribution of DOC estimates showed no dependency to other optically active elements. Nevertheless, estimates were sensitive to haze and sun glint.

Monitoring, simulation and early warning of cyanobacterial harmful algal blooms: An upgraded framework for eutrophic lakes

Cyanobacterial Harmful Algal Bloom (CyanoHAB) is a global aquatic environmental issue, posing considerable eco-environmental challenges in freshwater lakes. Comprehensive monitoring and accurate prediction of CyanoHABs are essential for their scientific management. Nevertheless, traditional satellite-based monitoring and process-oriented prediction methods of CyanoHABs failed to satisfy this demand due to the limited spatiotemporal resolutions of both monitoring data and prediction results. To address this issue, this paper proposes an upgraded framework for comprehensive monitoring and accurate prediction of CyanoHABs. A collaborative CyanoHAB monitoring network was firstly constructed by integrating space, aerial, and ground-based monitoring means. As a result, CyanoHAB conditions were assessed frequently covering the entire lake, its key areas, and core positions. Furthermore, by overcoming technical limitations associated with high-precision simulation of the growth-drift-accumulation process of CyanoHABs, such as the unclear drifting process of CyanoHABs and the mechanism of its coastal accumulation, the multi-scale CyanoHAB prediction was realized interconnecting the entire lake and its nearshore areas. The implemented framework has been applied in Lake Chaohu for over three years. It provided high-frequency and high-spatial-resolution CyanoHAB monitoring, as well as its multi-scale and accurate simulation. The application of this framework in Lake Chaohu had significantly improved the accuracies of CyanoHAB monitoring, simulation, and early warning. This advancement holds significant scientific value and offers potential for CyanoHAB prevention and control in eutrophic lakes.

Discriminating bloom-forming cyanobacteria using lab-based hyperspectral imagery and machine learning: Validation with toxic species under environmental ranges

Cyanobacteria are major contributors to algal blooms in inland waters, threatening ecosystem function and water uses, especially when toxin-producing strains dominate. Here, we examine 140 hyperspectral (HS) images of five representatives of the widespread, potentially toxin-producing and bloom-forming genera Microcystis, Planktothrix, Aphanizomenon, Chrysosporum and Dolichospermum, to determine the potential of utilizing visible and near-infrared (VIS/NIR) reflectance for their discrimination. Cultures were grown under various light and nutrient conditions to induce a wide range of pigment and spectral variability, mimicking variations potentially found in natural environments. Importantly, we assumed a simplified scenario where all spectral variability was derived from cyanobacteria. Throughout the cyanobacterial life cycle, multiple HS images were acquired along with extractions of chlorophyll a and phycocyanin. Images were calibrated and average spectra from the region of interest were extracted using k-means algorithm. The spectral data were pre-processed with seven methods for subsequent integration into Random Forest models, whose performances were evaluated with different metrics on the training, validation and testing sets. Successful classification rates close to 90 % were achieved using either the first or second derivative along with spectral smoothing, identifying important wavelengths in both the VIS and NIR. Microcystis and Chrysosporum were the genera achieving the highest accuracy (>95 %), followed by Planktothrix (79 %), and finally Dolichospermum and Aphanizomenon (>50 %). The potential of HS imagery to discriminate among toxic cyanobacteria is discussed in the context of advanced monitoring, aiming to enhance remote sensing capabilities and risk predictions for water bodies affected by cyanobacterial harmful algal blooms.

Using multispectral drones to predict water quality in a subtropical estuary

Drones are revolutionising earth system observations, and are increasingly used for high resolution monitoring of water quality. The objective of this research was to test whether drone-based multispectral imagery could predict important water quality parameters in an ICOLL (intermittently closed and opened lake or lagoon). Three water quality sampling campaigns were undertaken, measuring temperature, salinity, pH, dissolved oxygen (DO), chlorophyll (CHL), turbidity, total suspended sediments (TSS), coloured dissolved organic matter (CDOM), green algae, crytophyta, diatoms, bluegreen algae and total algal concentrations. DistilM statistical analyses were conducted to reveal the bands accounting for the most variation across all water quality data, then linear correlations between specific band/band ratios and individual water quality parameters were performed. DistilM analyses revealed the NIR band accounted for most variation in March, the Green band in April and the RE band in May, and showed that the most important contributors varied significantly among campaigns and variables. Significant linear correlations with R2 > 0.4 were obtained for eleven of the water quality parameters tested, with the strongest correlation obtained for CHL and the green band (R2 = 0.72). The relative importance of predictor bands and observed water quality parameters varied temporally. We conclude that drones with a multispectral sensor can produce useful 'snapshot' prediction maps for a range of water quality parameters, such as chlorophyll, bluegreen algae and dissolved oxygen. However, a single model was insufficient to reproduce the temporal variation of water parameters in dynamic estuarine systems.

Deep learning-based efficient drone-borne sensing of cyanobacterial blooms using a clique-based feature extraction approach

Recent advances in remote sensing techniques provide a new horizon for monitoring the spatiotemporal variations of harmful algal blooms (HABs) using hyperspectral data in inland water. In this study, a hierarchical concatenated variational autoencoder (HCVAE) is proposed as an efficient and accurate deep learning (DL) based bio-optical model. To demonstrate its usefulness in retrieving algal pigments, the HCVAE is applied to bloom-prone regions in Daecheong Lake, South Korea. By abstracting the similarity between highly related features using layer-wise clique-based latent-feature extraction, HCVAE reduces the computational loads in deriving outputs while preventing performance degradation. Graph-based clique-detection uses information theory-based criteria to group the related reflectance spectra. Consequently, six latent features were extracted from 79 spectral bands to consist of a multilevel hierarchy of HCVAE that can simultaneously estimate concentrations of chlorophyll-a (Chl-a) and phycocyanin (PC). Despite the parsimonious model architecture, the Chl-a and PC concentrations estimated by HCVAE closely agree with the measured concentrations, with test R2 values of 0.76 and 0.82, respectively. In addition, spatial distribution maps of algal pigments obtained from HCVAE using drone-borne reflectance successfully capture the blooming spots. Based on its multilevel hierarchical architecture, HCVAE can provide the importance of latent features along with their individual wavelengths using Shapley additive explanations. The most important latent features covered the spectral regions associated with both Chl-a and PC. The lightweight neural network DNNsel, which uses only the spectral bands of highest importance in latent-feature extraction, performed comparably to HCVAE. The study results demonstrate the utility of the multilevel hierarchical architecture as a comprehensive assessment model for near-real-time drone-borne sensing of HABs. Moreover, HCVAE is applicable to a wide range of environmental big data, as it can handle numerous sets of features.

Sustainable bioremediation technologies for algal toxins and their ecological significance

The emergence of algal toxins in water ecosystems poses a significant ecological and human health concern. These toxins, produced by various algal species, can lead to harmful algal blooms, and have far-reaching consequences on biodiversity, food chains, and water quality. This review explores the types and sources of algal toxins, their ecological impacts, and the associated human health risks. Additionally, the review delves into the potential of bioremediation strategies to mitigate the effects of algal toxins. It discusses the role of microorganisms, enzymes, and algal-bacterial interactions in toxin removal, along with engineering approaches such as advanced oxidation processes and adsorbent utilization. Microbes and enzymes have been studied for their environmentally friendly and biocompatible properties, which make them useful for controlling or removing harmful algae and their toxins. The challenges and limitations of bioremediation are examined, along with case studies highlighting successful toxin control efforts. Finally, the review outlines future prospects, emerging technologies, and the need for continued research to effectively address the complex issue of algal toxins and their ecological significance.

Enhancing citrus fruit yield investigations through flight height optimization with UAV imaging

Citrus fruit yield is essential for market stability, as it allows businesses to plan for production and distribution. However, yield estimation is a complex and time-consuming process that often requires a large number of field samples to ensure representativeness. To address this challenge, we investigated the optimal altitude for unmanned aerial vehicle (UAV) imaging to estimate the yield of Citrus unshiu fruit. We captured images from five different altitudes (30 m, 50 m, 70 m, 90 m, and 110 m), and determined that a resolution of approximately 5 pixels/cm is necessary for reliable estimation of fruit size based on the average diameter of C. unshiu fruit (46.7 mm). Additionally, we found that histogram equalization of the images improved fruit count estimation compared to using untreated images. At the images from 30 m height, the normal image estimates fruit numbers as 73, 55, and 88. However, the histogram equalized image estimates 88, 71, 105. The actual number of fruits is 124, 88, and 141. Using a Vegetation Index such as IPCA showed a similar estimation value to histogram equalization, but I1 estimation represents a gap to actual yields. Our results provide a valuable database for future UAV field investigations of citrus fruit yield. Using flying platforms like UAVs can provide a step towards adopting this sort of model spanning ever greater regions at a cheap cost, with this system generating accurate results in this manner.

A study of cyanobacterial bloom monitoring using unmanned aerial vehicles, spectral indices, and image processing techniques

Last 5 years, the deterioration of water quality caused by algal bloom has emerged as a serious issue in Korea. The method of on-site water sampling to check algal bloom and cyanobacteria is problematic by only partially measuring the site and not fully representing the field, while at the same time, consuming a lot of time and manpower to complete it. In this study, the different spectral indices reflecting the spectral characteristics of photosynthetic pigments were compared. We monitored harmful algal bloom and cyanobacteria in Nakdong rivers with multispectral sensor images from unmanned aerial vehicles (UAVs). The multispectral sensor images were used to assess the applicability of estimating cyanobacteria concentration based on field sample data. Several wavelength analysis techniques were conducted in June, August, and September 2021, when algal bloom intensified, including the analysis of images from multispectral cameras using normalized difference vegetation index (NDVI), green normalized difference vegetation index (GNDVI), blue normalized difference vegetation index (BNDVI), and normalized difference red edge index (NDREI). Radiation correction was performed using the reflection panel to minimize interference that could distort the analysis results of the UAVs image. Regarding field application and correlation analysis, correlation value of NDREI was the highest at 0.7203 in June. And NDVI was the highest at 0.7607 and 0.7773 in August and September, respectively. Based on the results obtained from this study, it is found that it is possible to quickly measure and judge the distribution status of cyanobacteria. In addition, the multispectral sensor installed to the UAV can be considered as a basic technology for monitoring the underwater environment.

An Unmanned Surface Vehicle (USV): Development of an Autonomous Boat with a Sensor Integration System for Bathymetric Surveys

A reliable yet economical unmanned surface vehicle (USV) has been developed for the bathymetric surveying of lakes. The system combines an autonomous navigation framework, environmental sensors, and a multibeam echosounder to collect submerged topography, temperature, and wind speed and monitor the vehicle's status during prescribed path-planning missions. The main objective of this research is to provide a methodological framework to build an autonomous boat with independent decision-making, efficient control, and long-range navigation capabilities. Integration of sensors with navigation control enabled the automatization of position, orientation, and velocity. A solar power integration was also tested to control the duration of the autonomous missions. The results of the solar power compared favorably with those of the standard LiPO battery system. Extended and autonomous missions were achieved with the developed platform, which can also evaluate the danger level, weather circumstances, and energy consumption through real-time data analysis. With all the incorporated sensors and controls, this USV can make self-governing decisions and improve its safety. A technical evaluation of the proposed vehicle was conducted as a measurable metric of the reliability and robustness of the prototype. Overall, a reliable, economic, and self-powered autonomous system has been designed and built to retrieve bathymetric surveys as a first step to developing intelligent reconnaissance systems that combine field robotics with machine learning to make decisions and adapt to unknown environments.

Remote sensing for mapping algal blooms in freshwater lakes: a review

A large number of freshwater lakes around the world show recurring harmful algal blooms, particularly cyanobacterial blooms, that affect public health and ecosystem integrity. Prediction, early detection, and monitoring of algal blooms are inevitable for the mitigation and management of their negative impacts on the environment and human beings. Remote sensing provides an effective tool for detecting and spatiotemporal monitoring of these events. Various remote sensing platforms, such as ground-based, spaceborne, airborne, and UAV-based, have been used for mounting sensors for data acquisition and real-time monitoring of algal blooms in a cost-effective manner. This paper presents an updated review of various remote sensing platforms, data types, and algorithms for detecting and monitoring algal blooms in freshwater lakes. Recent studies on remote sensing using sophisticated sensors mounted on UAV platforms have revolutionized the detection and monitoring of water quality. Image processing algorithms based on Artificial Intelligence (AI) have been improved recently and predicting algal blooms based on such methods will have a key role in mitigating the negative impacts of eutrophication in the future.

Laser Remote Sensing of Lake Kinneret by Compact Fluorescence LiDAR

Harmful algal blooms in freshwater reservoirs became a steady phenomenon in recent decades, so instruments for monitoring water quality in real time are of high importance. Modern satellite remote sensing is a powerful technique for mapping large areas but cannot provide depth-resolved data on algal concentrations. As an alternative to satellite techniques, laser remote sensing is a perspective technique for depth-resolved studies of fresh or seawater. Recent progress in lasers and electronics makes it possible to construct compact and lightweight LiDARs (Light Detection and Ranging) that can be installed on small boats or drones. LiDAR sensing is an established technique; however, it is more common in studies of seas rather than freshwater reservoirs. In this study, we present an experimental verification of a compact LiDAR as an instrument for the shipborne depth profiling of chlorophyll concentration across the freshwater Lake Kinneret (Israel). Chlorophyll depth profiles of 3 m with a 1.5 m resolution were measured in situ, under sunlight conditions. A good correlation (R2 = 0.89) has been established between LiDAR signals and commercial algae profiler data. A non-monotonic algae depth distribution was observed along the boat route during daytime (Tiberias city-Jordan River mouth-Tiberias city). The impact of high algal concentration on water temperature laser remote sensing has been studied in detail to estimate the LiDAR capability of in situ simultaneous measurements of temperature and chlorophyll concentration.

Submesoscale Currents from UAV: An Experiment over Small-Scale Eddies in the Coastal Black Sea

A commercial unmanned aerial vehicle (UAV) is used for coastal submesoscale current estimation. The measurements were conducted in the Black Sea coastal area with a DJI Mavic quadcopter operated in self-stabilized mode at different look geometry (200–500-m altitude, 0–30∘ incidence angle). The results of four flights during 2020–2021 are reported. Some scenes captured a train of or individual eddies, generated by a current flowing around a topographic obstacle (pier). The eddies were optically visible due to the mixing of clear and turbid waters in the experiment area. Wave dispersion analysis (WDA), based on dispersion shell signature recognition, is used to estimate the sea surface current in the upper 0.5-m-thick layer. The WDA-derived current maps are consistent with visible eddy manifestations. The alternative method, based on 4D-variational assimilation (4DVAR), agrees well with WDA and can complement it in calm wind conditions when waves are too short to be resolved by the UAV sensor. The error of reconstructed velocity due to the uncontrolled UAV motions is assessed from referencing to static land control points. At a 500-m altitude and 7–10 m s−1 wind speed (reported by a local weather station for 10-m height), the UAV drift velocity, or the bias of the current velocity estimate, is about 0.1 m s−1, but can be reduced to 0.05 m s−1 if the first 10 s of the UAV self-stabilization period are excluded from the analysis. The observed anticyclonic eddies (200–400 m in diameter with 0.15–0.30 m s−1 orbital velocity) have an unexpectedly high Rossby number, Ro∼15, suggesting the importance of nonlinear centrifugal force for such eddies and their significant role in coastal vertical transport.

Evaluating the performance of temporal and spatial early warning statistics of algal blooms

Regime shifts have large consequences for ecosystems and the services they provide. However, understanding the potential for, causes of, proximity to, and thresholds for regime shifts in nearly all settings is difficult. Generic statistical indicators of resilience have been proposed and studied in a wide range of ecosystems as a method to detect when regime shifts are becoming more likely without direct knowledge of underlying system dynamics or thresholds. These early warning statistics (EWS) have been studied separately but there have been few examples that directly compare temporal and spatial EWS in ecosystem-scale empirical data. To test these methods, we collected high-frequency time series and high-resolution spatial data during a whole-lake fertilization experiment while also monitoring an adjacent reference lake. We calculated two common EWS, standard deviation and autocorrelation, in both time series and spatial data to evaluate their performance prior to the resulting algal bloom. We also applied the quickest detection method to generate binary alarms of resilience change from temporal EWS. One temporal EWS, rolling window standard deviation, provided advanced warning in most variables prior to the bloom, showing trends and between-lake patterns consistent with theory. In contrast, temporal autocorrelation and both measures of spatial EWS (spatial SD, Moran's  I) provided little or no warning. By compiling time series data from this and past experiments with and without nutrient additions, we were able to evaluate temporal EWS performance for both constant and changing resilience conditions. True positive alarm rates were 2.5-8.3 times higher for rolling window standard deviation when a lake was being pushed towards a bloom than the rate of false positives when it was not. For rolling window autocorrelation, alarm rates were much lower and no variable had a higher true positive than false positive alarm rate. Our findings suggest temporal EWS provide advanced warning of algal blooms and that this approach could help managers prepare for and/or minimize negative bloom impacts.

sUAS Monitoring of Coastal Environments: A Review of Best Practices from Field to Lab

Coastal environments are some of the most dynamic environments in the world. As they are constantly changing, so are the technologies and techniques we use to map and monitor them. The rapid advancement of sUAS-based remote sensing calls for rigorous field and processing workflows so that more reliable and consistent sUAS projects of coastal environments are carried out. Here, we synthesize the best practices to create sUAS photo-based surveying and processing workflows that can be used and modified by coastal scientists, depending on their project objective. While we aim to simplify the complexity of these workflows, we note that the nature of this work is a craft that carefully combines art, science, and technology. sUAS LiDAR is the next advancement in mapping and monitoring coastal environments. Therefore, future work should consider synthesizing best practices to develop rigorous field and data processing workflows used for sUAS LiDAR-based projects of coastal environments.

Submerged aquatic vegetation: Overview of monitoring techniques used for the identification and determination of spatial distribution in European coastal waters

Coastal waters are highly productive and diverse ecosystems, often dominated by marine submerged aquatic vegetation (SAV) and strongly affected by a range of human pressures. Due to their important ecosystem functions, for decades, both researchers and managers have investigated changes in SAV abundance and growth dynamics to understand linkages to human perturbations. In European coastal waters, monitoring of marine SAV communities traditionally combines diver observations and/or video recordings to determine, for example, spatial coverage and species composition. While these techniques provide very useful data, they are rather time consuming, labor-intensive, and limited in their spatial coverage. In this study, we compare traditional and emerging remote sensing technologies used to monitor marine SAV, which include satellite and occupied aircraft operations, aerial drones, and acoustics. We introduce these techniques and identify their main strengths and limitations. Finally, we provide recommendations for researchers and managers to choose the appropriate techniques for future surveys and monitoring programs. Integr Environ Assess Manag 2022;18:892-908. © 2021 SETAC.

Mapping Benthic Algae and Cyanobacteria in River Channels from Aerial Photographs and Satellite Images: A Proof-of-Concept Investigation on the Buffalo National River, AR, USA

Although rivers are of immense practical, aesthetic, and recreational value, these aquatic habitats are particularly sensitive to environmental changes. Increasingly, changes in streamflow and water quality are resulting in blooms of bottom-attached (benthic) algae, also known as periphyton, which have become widespread in many water bodies of US national parks. Because these blooms degrade visitor experiences and threaten human and ecosystem health, improved methods of characterizing benthic algae are needed. This study evaluated the potential utility of remote sensing techniques for mapping variations in algal density in shallow, clear-flowing rivers. As part of an initial proof-of-concept investigation, field measurements of water depth and percent cover of benthic algae were collected from two reaches of the Buffalo National River along with aerial photographs and multispectral satellite images. Applying a band ratio algorithm to these data yielded reliable depth estimates, although a shallow bias and moderate level of precision were observed. Spectral distinctions among algal percent cover values ranging from 0 to 100% were subtle and became only slightly more pronounced when the data were aggregated to four ordinal levels. A bagged trees machine learning model trained using the original spectral bands and image-derived depth estimates as predictor variables was used to produce classified maps of algal density. The spatial and temporal patterns depicted in these maps were reasonable but overall classification accuracies were modest, up to 64.6%, due to a lack of spectral detail. To further advance remote sensing of benthic algae and other periphyton, future studies could adopt hyperspectral approaches and more quantitative, continuous metrics such as biomass.

Supporting a Resilience Observatory to Climate Risks in French Polynesia: From Valorization of Preexisting Data to Low-Cost Data Acquisition

Climate change has an ever-increasing impact on island territories. Whether it is due to rising sea levels or the increase in recurrence and intensity of extreme events, island territories are increasingly vulnerable. These impacts are expected to affect marine and terrestrial biodiversity, human occupation (infrastructure) and other activities such as agriculture and tourism, the two economic pillars of French Polynesia. While the current and future impacts of climate change on island territories are generally accepted, data acquisition, modeling, and projections of climate change are more complex to obtain and limitedly cover the island territories of the Pacific region. This article aims to develop methodologies for the acquisition and exploitation of data on current and future climate risks and their impacts in French Polynesia. This work of acquisition and valorization is part of a research project for the development of an observatory of resilience to climate risks in the perspective of building a spatial decision support system.

Comparing the performance of machine learning algorithms for remote and in situ estimations of chlorophyll-a content: A case study in the Tri An Reservoir, Vietnam

Chlorophyll-a (Chl-a) is one of the most important indicators of the trophic status of inland waters, and its continued monitoring is essential. Recently, the operated Sentinel-2 MSI satellite offers high spatial resolution images for remote water quality monitoring. In this study, we tested the performance of the three well-known machine learning (ML) (random forest [RF], support vector machine [SVM], and Gaussian process [GP]) and the two novel ML (extreme gradient boost (XGB) and CatBoost [CB]) models for estimation a wide range of Chl-a concentration (10.1-798.7 μg/L) using the Sentinel-2 MSI data and in situ water quality measurement in the Tri An Reservoir (TAR), Vietnam. GP indicated the most reliable model for predicting Chl-a from water quality parameters (R²  = 0.85, root-mean-square error [RMSE] = 56.65 μg/L, Akaike's information criterion [AIC] = 575.10, and Bayesian information criterion [BIC] = 595.24). Regarding input model as water surface reflectance, CB was the superior model for Chl-a retrieval (R²  = 0.84, RMSE = 46.28 μg/L, AIC = 229.18, and BIC = 238.50). Our results indicated that GP and CB are the two best models for the prediction of Chl-a in TAR. Overall, the Sentinel-2 MSI coupled with ML algorithms is a reliable, inexpensive, and accurate instrument for monitoring Chl-a in inland waters. PRACTITIONER POINTS: Machine learning algorithms were used for both remote sensing data and in situ water quality measurements. The performance of five well-known machine learning models was tested Gaussian process was the most reliable model for predicting Chl-a from water quality parameters CatBoost was the best model for Chl-a retrieval from water surface reflectance.

A Meta-Analysis on Harmful Algal Bloom (HAB) Detection and Monitoring: A Remote Sensing Perspective

Algae serves as a food source for a wide range of aquatic species; however, a high concentration of inorganic nutrients under favorable conditions can result in the development of harmful algal blooms (HABs). Many studies have addressed HAB detection and monitoring; however, no global scale meta-analysis has specifically explored remote sensing-based HAB monitoring. Therefore, this manuscript elucidates and visualizes spatiotemporal trends in HAB detection and monitoring using remote sensing methods and discusses future insights through a meta-analysis of 420 journal articles. The results indicate an increase in the quantity of published articles which have facilitated the analysis of sensors, software, and HAB proxy estimation methods. The comparison across multiple studies highlighted the need for a standardized reporting method for HAB proxy estimation. Research gaps include: (1) atmospheric correction methods, particularly for turbid waters, (2) the use of analytical-based models, (3) the application of machine learning algorithms, (4) the generation of harmonized virtual constellation and data fusion for increased spatial and temporal resolutions, and (5) the use of cloud-computing platforms for large scale HAB detection and monitoring. The planned hyperspectral satellites will aid in filling these gaps to some extent. Overall, this review provides a snapshot of spatiotemporal trends in HAB monitoring to assist in decision making for future studies.

Applications of Uncrewed Aerial Vehicles (UAV) Technology to Support Integrated Coastal Zone Management and the UN Sustainable Development Goals at the Coast

Data and information obtained from low-cost uncrewed aerial vehicles (UAVs), commonly referred to as 'drones', can be used to support integrated coastal zone management (ICZM) and sustainable development at the coast. Several recent studies in various disciplines, including ecology, engineering, and several branches of physical and human geography, describe the applications of UAV technology with practical coastal management potential, yet the extent to which such data can contribute to these activities remains underexplored. The main objective of this paper is to collate this knowledge to highlight the areas in which UAV technology can contribute to ICZM and can influence the achievement of the UN Sustainable Development Goals (SDGs) at the coast. We focus on applications with practical potential for coastal management activities and assess their accessibility in terms of cost, ease of use, and maturity. We identified ten (out of the 17) SDGs to which UAVs can contribute data and information. Examples of applications include surveillance of illegal fishing and aquaculture activities, seaweed resource assessments, cost-estimation of post-storm damages, and documentation of natural and cultural heritage sites under threat from, for example, erosion and sea-level rise. An awareness of how UAVs can contribute to ICZM, as well as the limitations of the technology, can help coastal practitioners to evaluate their options for future management activities.

SUPPLEMENTARY INFORMATION

The online version contains supplementary material available at 10.1007/s12237-021-01001-5.

Monitoring Cyanobacteria Bloom in Dianchi Lake Based on Ground-Based Multispectral Remote-Sensing Imaging: Preliminary Results

Some lakes in China have undergone serious eutrophication, with cyanobacterial blooms occurring frequently. Dynamic monitoring of cyanobacterial blooms is important. At present, the traditional lake-survey-based cyanobacterial bloom monitoring is spatiotemporally limited and requires considerable human and material resources. Although satellite remote sensing can rapidly monitor large-scale cyanobacterial blooms, clouds and other factors often mean that effective images cannot be obtained. It is also difficult to use this method to dynamically monitor and manage aquatic environments and provide early warnings of cyanobacterial blooms in lakes and reservoirs. In contrast, ground-based remote sensing can operate under cloud cover and thus act as a new technical method to dynamically monitor cyanobacterial blooms. In this study, ground-based remote-sensing technology was applied to multitemporal, multidirectional, and multiscene monitoring of cyanobacterial blooms in Dianchi Lake via an area array multispectral camera mounted on a rotatable cloud platform at a fixed station. Results indicate that ground-based imaging remote sensing can accurately reflect the spatiotemporal distribution characteristics of cyanobacterial blooms and provide timely and accurate data for salvage treatment and early warnings. Thus, ground-based multispectral remote-sensing data can operationalize the dynamic monitoring of cyanobacterial blooms. The methods and results from this study can provide references for monitoring such blooms in other lakes.

A new approach to monitor water quality in the Menor sea (Spain) using satellite data and machine learning methods

The Menor sea is a coastal lagoon declared by the European Union as a sensitive area to eutrophication due to human activities. To control the deterioration of its water quality, it is necessary to monitor some parameters such as chlorophyll-a (chl-a), which indicates phytoplankton biomass in the water. In the study area, current efforts focus on in-situ measurements to estimate chl-a by means of a few permanent stations and seasonal oceanographic campaigns, however they are expensive and time consuming. In this work, we proposed a machine learning approach based on Sentinel-2 data to estimate chl-a content on the upper part of the water column. Random forest (rf), support vector machine (svmRadial), Artificial Neural Network (ANN) and Deep Neural Network (DNN) algorithms were utilized under three feature selection scenarios, and several spectral indices were used in combination with Sentinel 2 bands. Rf, svmRadial and DNN performed better when all the available predictors were included in the models (RMSE = 0.82, 0.82 and 1.76 mg/m³ respectively), whereas ANN achieved better results under scenario c (principal components). Our results demonstrate the possibility to estimate chl-a concentration in a cost-effective manner and thereby provide near-real time information to monitor the water quality of the Menor sea, what can be of great interest for local authorities, tourism and fishing industry.

A Remote Sensing and Machine Learning-Based Approach to Forecast the Onset of Harmful Algal Bloom

In the last few decades, harmful algal blooms (HABs, also known as “red tides”) have become one of the most detrimental natural phenomena in Florida’s coastal areas. Karenia brevis produces toxins that have harmful effects on humans, fisheries, and ecosystems. In this study, we developed and compared the efficiency of state-of-the-art machine learning models (e.g., XGBoost, Random Forest, and Support Vector Machine) in predicting the occurrence of HABs. In the proposed models the K. brevis abundance is used as the target, and 10 level-02 ocean color products extracted from daily archival MODIS satellite data are used as controlling factors. The adopted approach addresses two main shortcomings of earlier models: (1) the paucity of satellite data due to cloudy scenes and (2) the lag time between the period at which a variable reaches its highest correlation with the target and the time the bloom occurs. Eleven spatio-temporal models were generated, each from 3 consecutive day satellite datasets, with a forecasting span from 1 to 11 days. The 3-day models addressed the potential variations in lag time for some of the temporal variables. One or more of the generated 11 models could be used to predict HAB occurrences depending on availability of the cloud-free consecutive days. Findings indicate that XGBoost outperformed the other methods, and the forecasting models of 5–9 days achieved the best results. The most reliable model can forecast eight days ahead of time with balanced overall accuracy, Kappa coefficient, F-Score, and AUC of 96%, 0.93, 0.97, and 0.98 respectively. The euphotic depth, sea surface temperature, and chlorophyll-a are always among the most significant controlling factors. The proposed models could potentially be used to develop an “early warning system” for HABs in southwest Florida.

Unmanned Aerial Vehicles for Magnetic Surveys: A Review on Platform Selection and Interference Suppression

In the past two decades, unmanned aerial vehicles (UAVs) have been used in many scientific research fields for various applications. In particular, the use of UAVs for magnetic surveys has become a hot spot and is expected to be actively applied in the future. A considerable amount of literature has been published on the use of UAVs for magnetic surveys, however, how to choose the platform and reduce the interference of UAV to the collected data have not been discussed systematically. There are two primary aims of this study: (1) To ascertain the basis of UAV platform selection and (2) to investigate the characteristics and suppression methods of UAV magnetic interference. Systematic reviews were performed to summarize the results of 70 academic studies (from 2005 to 2021) and outline the research tendencies for applying UAVs in magnetic surveys. This study found that multi-rotor UAVs have become the most widely used type of UAVs in recent years because of their advantages such as easiness to operate, low cost, and the ability of flying at a very low altitude, despite their late appearance. With the improvement of the payload capacity of UAVs, to use multiple magnetometers becomes popular since it can provide more abundant information. In addition, this study also found that the most commonly used method to reduce the effects of the UAV’s magnetic interference is to increase the distance between the sensors and the UAV, although this method will bring about other problems, e.g., the directional and positional errors of sensors caused by erratic movements, the increased risk of impact to the magnetometers. The pros and cons of different types of UAV, magnetic interference characteristics and suppression methods based on traditional aeromagnetic compensation and other methods are discussed in detail. This study contributes to the classification of current UAV applications as well as the data processing methods in magnetic surveys.

Comparative Evaluation of Mapping Accuracy between UAV Video versus Photo Mosaic for the Scattered Urban Photovoltaic Panel

It is common practice for unmanned aerial vehicle (UAV) flight planning to target an entire area surrounding a single rooftop’s photovoltaic panels while investigating solar-powered roofs that account for only 1% of the urban roof area. It is very hard for the pre-flight route setting of the autopilot for a specific area (not for a single rooftop) to capture still images with high overlapping rates of a single rooftop’s photovoltaic panels. This causes serious unnecessary data redundancy by including the surrounding area because the UAV is unable to focus on the photovoltaic panel installed on the single rooftop. The aim of this research was to examine the suitability of a UAV video stream for building 3-D ortho-mosaics focused on a single rooftop and containing the azimuth, aspect, and tilts of photovoltaic panels. The 3-D position accuracy of the video stream-based ortho-mosaic has been shown to be similar to that of the autopilot-based ortho-photo by satisfying the mapping accuracy of the American Society for Photogrammetry and Remote Sensing (ASPRS): 3-D coordinates (0.028 m) in 1:217 mapping scale. It is anticipated that this research output could be used as a valuable reference in employing video stream-based ortho-mosaics for widely scattered single rooftop solar panels in urban settings.

Hybrid Approach of Unmanned Aerial Vehicle and Unmanned Surface Vehicle for Assessment of Chlorophyll-a Imagery Using Spectral Indices in Stream, South Korea

The purpose of this study is to compare the spectral indices for a two-dimensional river algae map using an unmanned aerial vehicle (UAV) and an unmanned surface vehicle (USV) hybrid system. The UAV and USV hybrid systems can overcome the limitation of not being able to effectively compare images of the same region obtained at different times and under different seasonal conditions, when using a method of comparing and analyzing with absolute values in remote sensing. Radiometric correction was performed to minimize the interference that could distort the analysis results of the UAV imagery, and the images were taken under weather conditions that would minimally affect them. Three spectral indices, namely, normalized difference vegetation index (NDVI), normalized green–red difference index (NGRDI), green normalized difference vegetation index (GNDVI), and normalized difference red edge index (NDRE) were compared for the chlorophyll-a images. In field application and correlational analysis, the NDVI was strongly correlated with chlorophyll-a (R2 = 0.88, p < 0.001), and the GNDVI was moderately correlated with chlorophyll-a (R2 = 0.74, p < 0.001). As a result of comparing the chlorophyll-a concentration with the in-situ chlorophyll-a imagery by UAV, we obtained the RMSE of NDVI at 2.25, and the RMSE of GNDVI at 3.41.

A Review of Unoccupied Aerial Vehicle Use in Wetland Applications: Emerging Opportunities in Approach, Technology, and Data

Recent developments in technology and data processing for Unoccupied Aerial Vehicles (UAVs) have revolutionized the scope of ecosystem monitoring, providing novel pathways to fill the critical gap between limited-scope field surveys and limited-customization satellite and piloted aerial platforms. These advances are especially ground-breaking for supporting management, restoration, and conservation of landscapes with limited field access and vulnerable ecological systems, particularly wetlands. This study presents a scoping review of the current status and emerging opportunities in wetland UAV applications, with particular emphasis on ecosystem management goals and remaining research, technology, and data needs to even better support these goals in the future. Using 122 case studies from 29 countries, we discuss which wetland monitoring and management objectives are most served by this rapidly developing technology, and what workflows were employed to analyze these data. This review showcases many ways in which UAVs may help reduce or replace logistically demanding field surveys and can help improve the efficiency of UAV-based workflows to support longer-term monitoring in the face of wetland environmental challenges and management constraints. We also highlight several emerging trends in applications, technology, and data and offer insights into future needs.

Applications of Unmanned Aerial Systems (UASs) in Hydrology: A Review

In less than two decades, UASs (unmanned aerial systems) have revolutionized the field of hydrology, bridging the gap between traditional satellite observations and ground-based measurements and allowing the limitations of manned aircraft to be overcome. With unparalleled spatial and temporal resolutions and product-tailoring possibilities, UAS are contributing to the acquisition of large volumes of data on water bodies, submerged parameters and their interactions in different hydrological contexts and in inaccessible or hazardous locations. This paper provides a comprehensive review of 122 works on the applications of UASs in surface water and groundwater research with a purpose-oriented approach. Concretely, the review addresses: (i) the current applications of UAS in surface and groundwater studies, (ii) the type of platforms and sensors mainly used in these tasks, (iii) types of products generated from UAS-borne data, (iv) the associated advantages and limitations, and (v) knowledge gaps and future prospects of UASs application in hydrology. The first aim of this review is to serve as a reference or introductory document for all researchers and water managers who are interested in embracing this novel technology. The second aim is to unify in a single document all the possibilities, potential approaches and results obtained by different authors through the implementation of UASs.

Improving the spatial and temporal monitoring of cyanotoxins in Iowa lakes using a multiscale and multi-modal monitoring approach

Cyanobacterial harmful algal blooms (CyanoHABs) are pervasive and negatively impact lake water quality, resulting in economic losses and public health risks through exposure to cyanotoxins. Therefore, it is critical to better monitor and understand the complexity of CyanoHABs, but current methods do not fully describe the spatial and temporal variability of bloom events. In this work, we developed a framework for a multiscale and multi-modal monitoring approach for CyanoHABs combining drone-based near-range remote sensing with analytical measurements of microcystin cyanotoxins and chlorophyll-a. We analyzed weekly beach monitoring samples from 37 lakes geographically distributed across the state of Iowa (USA) over a 15-week period in the summer of 2019 to quantify ELISA (bioassay), 12 microcystin congeners (LC-MS/MS), and chlorophyll-a. We developed a novel microcystin congener-normalized equivalent toxin metric to compare CyanoHAB impacted waters; this microcystin-LR normalized sum-of-congeners approach yields lower predicted toxicity than parallel ELISA results suggesting ELISA is conservative for assessment. A significant linear relationship existed between chlorophyll-a and microcystin for lakes throughout Iowa (R² = 0.39, p < 0.001); lakes with low watershed:lake area ratio and long residence times exhibited a stronger correlation. We then developed a novel geometry-based image processing approach to allow for stitching over-water drone images, a previous barrier in photogrammetry. We applied our mutli-modal framework to a case study on Green Valley Lake to assess initial viability and predicted microcystin concentrations within 33%. We concluded that multispectral imaging is possible but may presently be insufficient for predicting microcystin concentrations due to limitations in the spectral capabilities of the multispectral camera, but technologies are quickly advancing, and lightweight hyperspectral imaging could soon become feasible for investigating spatial bloom variability on lakes.

Are the shoreline and eutrophication of desert lakes related to desert development?

Desert lakes are unique ecosystems found in oases within desert landscapes. Despite the numerous studies on oases, there are no reports regarding the spatiotemporal distribution and causes of eutrophication in the desert lakes that are located at the edge of the Linze Oasis in northwestern China. In this study, the seasonal shoreline and eutrophication of a desert lake were monitored using an unmanned aerial vehicle (UAV) and water sampling during three crop growth stages. The spatial extents of the shoreline and algal blooms and the chromophoric dissolved organic matter (CDOM) absorption coefficient were derived through UAV images. The desert lake shoreline declined during the crop growing stage, which exhibited the largest water demand and began to expand after this stage. The estimated CDOM absorption coefficient measurements and classified algal bloom area showed seasonal variations that increased from spring to late summer and then decreased in autumn. The first two crop growth stages accounted for most of the water and fertilizer requirements of the entire growth period, which may have contributed to large amounts of groundwater consumption and pollution and resulted in peak eutrophication of the lake in the second growth stage. However, the CDOM absorption coefficient of the third stage was not well correlated with that of the first two stages, suggesting that the lake may be affected by the dual effects of groundwater and precipitation recharge in the third stage. These results indicate that the water quality of desert lakes may be affected by agricultural cultivation. The agricultural demands for water and fertilizer may change the spatiotemporal changes in water quality in the lake, especially in the middle and early stages of crop growth.

A Forecasting Method for Harmful Algal Bloom(HAB)-Prone Regions Allowing Preemptive Countermeasures Based only on Acoustic Doppler Current Profiler Measurements in a Large River

Harmful algal blooms (HABs) have been recognized as a serious problem for aquatic ecosystems and a threat to drinking water systems. The proposed method aimed to develop a practical and rapid countermeasure, enabling preemptive responses to massive algal blooms, through which prior to the algal bloom season we can identify HAB-prone regions based on estimations of where harmful algae initiates and develops significantly. The HAB-prone regions were derived from temperature, depth, flow velocity, and sediment concentration data based only on acoustic Doppler current profilers (ADCPs) without relying further on supplementary data collection, such as the water quality. For HAB-prone regions, we employed hot-spot analysis using K-means clustering and the Getis-Ord G*, in conjunction with the spatial autocorrelation of Moran’s I and the local index of spatial association (LISA). The validation of the derived HAB-prone regions was conducted for ADCP measurements located at the downstream of Nam and Nakdong River confluence, South Korea, which preceded three months of algal bloom season monitored by unmanned aerial vehicles (UAVs). The visual inspection demonstrated that the comparison resulted in an acceptable range of agreement and consistency between the predicted HAB-prone regions and actual UAV-based observations of actual algal blooms.

How Far Can We Classify Macroalgae Remotely? An Example Using a New Spectral Library of Species from the South West Atlantic (Argentine Patagonia)

Macroalgae have attracted the interest of remote sensing as targets to study coastal marine ecosystems because of their key ecological role. The goal of this paper is to analyze a new spectral library, including 28 macroalgae from the South-West Atlantic coast, in order to assess its use in hyperspectral remote sensing. The library includes species collected in the Atlantic Patagonian coast (Argentina) with representatives of brown, red, and green algae, being 22 of the species included in a spectral library for the first time. The spectra of these main groups are described, and the intraspecific variability is also assessed, considering kelp differentiated tissues and depth range, discussing them from the point of view of their effects on spectral features. A classification and an independent component analysis using the spectral range and simulated bands of two state-of-the-art drone-borne hyperspectral sensors were performed. The results show spectral features and clusters identifying further algae taxonomic groups, showing the potential applications of this spectral library for drone-based mapping of this ecological and economical asset of our coastal marine ecosystems.

UAV-Derived Data Application for Environmental Monitoring of the Coastal Area of Lake Sevan, Armenia with a Changing Water Level

The paper presents the range and applications of thematic tasks for ultra-high spatial resolution data from small unmanned aerial vehicles (UAVs) in the integral system of environmental multi-platform and multi-scaled monitoring of Lake Sevan, which is one of the greatest freshwater lakes in Eurasia. From the 1930s, it had been subjected to human-driven changing of the water level with associated and currently exacerbated environmental issues. We elaborated the specific techniques of optical and thermal surveys for the different coastal sites and phenomena in study. UAV-derived optical imagery and thermal stream were processed by a Structure-from-Motion algorithm to create digital surface models (DSMs) and ortho-imagery for several key sites. UAV imagery were used as additional sources of detailed spatial data under large-scale mapping of current land-use and point sources of water pollution in the coastal zone, and a main data source on environmental violations, especially sewage discharge or illegal landfills. The revealed present-day coastal types were mapped at a large scale, and the net changes of shoreline position and rates of shore erosion were calculated on multi-temporal UAV data using modified Hausdorff’s distance. Based on highly-detailed DSMs, we revealed the areas and objects at risk of flooding under the projected water level rise to 1903.5 m along the west coasts of Minor Sevan being the most popular recreational area. We indicated that the structural and environmental state of marsh coasts and coastal wetlands as potential sources of lake eutrophication and associated algal blooms could be more efficiently studied under thermal UAV surveys than optical ones. We proposed to consider UAV surveys as a necessary intermediary between ground data and satellite imagery with different spatial resolutions for the complex environmental monitoring of the coastal area and water body of Lake Sevan as a whole.

Data assimilation in surface water quality modeling: A review

Data assimilation (DA) techniques are powerful means of dynamic natural system modeling that allow for the use of data as soon as it appears to improve model predictions and reduce prediction uncertainty by correcting state variables, model parameters, and boundary and initial conditions. The objectives of this review are to explore existing approaches and advances in DA applications for surface water quality modeling and to identify future research prospects. We first reviewed the DA methods used in water quality modeling as reported in literature. We then addressed observations and suggestions regarding various factors of DA performance, such as the mismatch between both lateral and vertical spatial detail of measurements and modeling, subgrid heterogeneity, presence of temporally stable spatial patterns in water quality parameters and related biases, evaluation of uncertainty in data and modeling results, mismatch between scales and schedules of data from multiple sources, selection of parameters to be updated along with state variables, update frequency and forecast skill. The review concludes with the outlook section that outlines current challenges and opportunities related to growing role of novel data sources, scale mismatch between model discretization and observation, structural uncertainty of models and conversion of measured to simulated vales, experimentation with DA prior to applications, using DA performance or model selection, the role of sensitivity analysis, and the expanding use of DA in water quality management.

Intraseasonal variation of phycocyanin concentrations and environmental covariates in two agricultural irrigation ponds in Maryland, USA

Recently, cyanobacteria blooms have become a concern for agricultural irrigation water quality. Numerous studies have shown that cyanotoxins from these harmful algal blooms (HABs) can be transported to and assimilated into crops when present in irrigation waters. Phycocyanin is a pigment known only to occur in cyanobacteria and is often used to indicate cyanobacteria presence in waters. The objective of this work was to identify the most influential environmental covariates affecting the phycocyanin concentrations in agricultural irrigation ponds that experience cyanobacteria blooms of the potentially toxigenic species Microcystis and Aphanizomenon using machine learning methodology. The study was performed at two agricultural irrigation ponds over a 5-month period in the summer of 2018. Phycocyanin concentrations, along with sensor-based and fluorometer-based water quality parameters including turbidity (NTU), pH, dissolved oxygen (DO), fluorescent dissolved organic matter (fDOM), conductivity, chlorophyll, color dissolved organic matter (CDOM), and extracted chlorophyll were measured. Regression tree analyses were used to determine the most influential water quality parameters on phycocyanin concentrations. Nearshore sampling locations had higher phycocyanin concentrations than interior sampling locations and "zones" of consistently higher concentrations of phycocyanin were found in both ponds. The regression tree analyses indicated extracted chlorophyll, CDOM, and NTU were the three most influential parameters on phycocyanin concentrations. This study indicates that sensor-based and fluorometer-based water quality parameters could be useful to identify spatial patterns of phycocyanin concentrations and therefore, cyanobacteria blooms, in agricultural irrigation ponds and potentially other water bodies.

Application of UAV Imagery to Detect and Quantify Submerged Filamentous Algae and Rooted Macrophytes in a Non-Wadeable River

Imagery from unoccupied aerial vehicles (UAVs) is useful for mapping floating and emerged primary producers, as well as single taxa of submerged primary producers in shallow, clear lakes and streams. However, there is little research on the effectiveness of UAV imagery-based detection and quantification of submerged filamentous algae and rooted macrophytes in deeper rivers using a standard red-green-blue (RGB) camera. This study provides a novel application of UAV imagery analysis for monitoring a non-wadeable river, the Klamath River in northern California, USA. River depth and solar angle during flight were analyzed to understand their effects on benthic primary producer detection. A supervised, pixel-based Random Trees classifier was utilized as a detection mechanism to estimate the percent cover of submerged filamentous algae and rooted macrophytes from aerial photos within 32 sites along the river in June and July 2019. In-situ surveys conducted via wading and snorkeling were used to validate these data. Overall accuracy was 82% for all sites and the highest overall accuracy of classified UAV images was associated with solar angles between 47.5 and 58.72° (10:04 a.m. to 11:21 a.m.). Benthic algae were detected at depths of 1.9 m underwater and submerged macrophytes were detected down to 1.2 m (river depth) via the UAV imagery in this relatively clear river (Secchi depth > 2 m). Percent cover reached a maximum of 31% for rooted macrophytes and 39% for filamentous algae within all sites. Macrophytes dominated the upstream reaches, while filamentous algae dominated the downstream reaches closer to the Pacific Ocean. In upcoming years, four proposed dam removals are expected to alter the species composition and abundance of benthic filamentous algae and rooted macrophytes, and aerial imagery provides an effective method to monitor these changes.

Applications of Unmanned Aerial Vehicles in Mining from Exploration to Reclamation: A Review

Over the past decade, unmanned aerial vehicles (UAVs) have been used in the mining industry for various applications from mineral exploration to mine reclamation. This study aims to review academic papers on the applications of UAVs in mining by classifying the mining process into three phases: exploration, exploitation, and reclamation. Systematic reviews were performed to summarize the results of 65 articles (June 2010 to May 2020) and outline the research trend for applying UAVs in mining. This study found that UAVs are used at mining sites for geological and structural analysis via remote sensing, aerial geophysical survey, topographic surveying, rock slope analysis, working environment analysis, underground surveying, and monitoring of soil, water, ecological restoration, and ground subsidence. This study contributes to the classification of current UAV applications during the mining process as well as the identification of prevalent UAV types, data acquired by sensors, scales of targeted areas, and styles of flying control for the applications of UAVs in mining.

Low-Cost Unmanned Aerial Multispectral Imagery for Siltation Monitoring in Reservoirs

The recent and continuous development of unmanned aerial vehicles (UAV) and small cameras with different spectral resolutions and imaging systems promotes new remote sensing platforms that can supply ultra-high spatial and temporal resolution, filling the gap between ground-based surveys and orbital sensors. This work aimed to monitor siltation in two large rural and urban reservoirs by recording water color variations within a savanna biome in the central region of Brazil using a low cost and very light unmanned platform. Airborne surveys were conducted using a Parrot Sequoia camera (~0.15 kg) onboard a DJI Phantom 4 UAV (~1.4 kg) during dry and rainy seasons over inlet areas of both reservoirs. Field measurements of total suspended solids (TSS) and water clarity were made jointly with the airborne survey campaigns. Field hyperspectral radiometry data were also collected during two field surveys. Bio-optical models for TSS were tested for all spectral bands of the Sequoia camera. The near-infrared single band was found to perform the best (R2: 0.94; RMSE: 7.8 mg L−1) for a 0–180 mg L−1 TSS range and was used to produce time series of TSS concentration maps of the study areas. This flexible platform enabled monitoring of the increase of TSS concentration at a ~13 cm spatial resolution in urban and rural drainages in the rainy season. Aerial surveys allowed us to map TSS load fluctuations in a 1 week period during which no satellite images were available due to continuous cloud coverage in the rainy season. This work demonstrates that a low-cost configuration allows dense TSS monitoring at the inlet areas of reservoirs and thus enables mapping of the sources of sediment inputs, supporting the definition of mitigation plans to limit the siltation process.

Drone-based imaging to assess the microbial water quality in an irrigation pond: A pilot study

Microbial water quality datasets are essential in irrigated agricultural practices to detect and inform measures to prevent the contamination of produce. Escherichia coli (E. coli) concentrations are commonly used to evaluate microbial water quality. Remote sensing imagery has been successfully used to retrieve several water quality parameters that can be determinants of E. coli habitats in waterbodies. This pilot study was conducted to test the possibility of using imagery from a small unmanned aerial vehicle (sUAV or drone) to improve the estimation of microbial water quality in small irrigation ponds. In situ measurements of pH, turbidity, specific conductance, and concentrations of dissolved oxygen, chlorophyll-a, phycocyanin, and fluorescent dissolved organic matter were taken at depths of 0-15 cm in 23 locations across a pond in Central Maryland, USA. The pond surface was concurrently imaged using a drone with three modified GoPro cameras, and a multispectral MicaSense RedEdge camera with five spectral bands. The GoPro imagery was decomposed into red, blue, and green components. Mean digital numbers for 1-m radius areas in the images were combined with the water quality data to provide input for a regression tree-based analysis. The accuracy of the regression-tree data description with "only imagery" inputs was the same or better than that of trees constructed with "only water-quality parameters" as inputs. From multiple cross-validation runs with "only imagery" inputs for the regression trees, the average (±SD) determination coefficient and root-mean-squared error of the decimal logarithm of E. coli concentrations were 0.793 ± 0.035 and 0.131 ± 0.011, respectively. The results of this study demonstrate the opportunities for using sUAV imagery for obtaining a more accurate delineation of the spatial variation of E. coli concentrations in irrigation ponds.

A Method for Chlorophyll-a and Suspended Solids Prediction through Remote Sensing and Machine Learning

Total Suspended Solids (TSS) and chlorophyll-a concentration are two critical parameters to monitor water quality. Since directly collecting samples for laboratory analysis can be expensive, this paper presents a methodology to estimate this information through remote sensing and Machine Learning (ML) techniques. TSS and chlorophyll-a are optically active components, therefore enabling measurement by remote sensing. Two study cases in distinct water bodies are performed, and those cases use different spatial resolution data from Sentinel-2 spectral images and unmanned aerial vehicles together with laboratory analysis data. In consonance with the methodology, supervised ML algorithms are trained to predict the concentration of TSS and chlorophyll-a. The predictions are evaluated separately in both study areas, where both TSS and chlorophyll-a models achieved R-squared values above 0.8.

A High-Resolution Global Map of Giant Kelp (Macrocystis pyrifera) Forests and Intertidal Green Algae (Ulvophyceae) with Sentinel-2 Imagery

Giant kelp (Macrocystis pyrifera) is the most widely distributed kelp species on the planet, constituting one of the richest and most productive ecosystems on Earth, but detailed information on its distribution is entirely missing in some marine ecoregions, especially in the high latitudes of the Southern Hemisphere. Here, we present an algorithm based on a series of filter thresholds to detect giant kelp employing Sentinel-2 imagery. Given the overlap between the reflectances of giant kelp and intertidal green algae (Ulvophyceae), the latter are also detected on shallow rocky intertidal areas. The kelp filter algorithm was applied separately to vegetation indices, the Floating Algae Index (FAI), the Normalised Difference Vegetation Index (NDVI), and a novel formula (the Kelp Difference, KD). Training data from previously surveyed kelp forests and other coastal and ocean features were used to identify reflectance threshold values. This procedure was validated with independent field data collected with UAV imagery at a high spatial resolution and point-georeferenced sites at a low spatial resolution. When comparing UAV with Sentinel data (high-resolution validation), an average overall accuracy ≥ 0.88 and Cohen’s kappa ≥ 0.64 coefficients were found in all three indices for canopies reaching the surface with extensions greater than 1 hectare, with the KD showing the highest average kappa score (0.66). Measurements between previously surveyed georeferenced points and remotely-sensed kelp grid cells (low-resolution validation) showed that 66% of the georeferenced points had grid cells indicating kelp presence within a linear distance of 300 m. We employed the KD in our kelp filter algorithm to estimate the global extent of giant kelp and intertidal green algae per marine ecoregion and province, producing a high-resolution global map of giant kelp and intertidal green algae, powered by Google Earth Engine.

Adaptive Water Sampling Device for Aerial Robots

Water quality monitoring and predicting the changes in water characteristics require the collection of water samples in a timely manner. Water sample collection based on in situ measurable water quality indicators can increase the efficiency and precision of data collection while reducing the cost of laboratory analyses. The objective of this research was to develop an adaptive water sampling device for an aerial robot and demonstrate the accuracy of its functions in laboratory and field conditions. The prototype device consisted of a sensor node with dissolved oxygen, pH, electrical conductivity, temperature, turbidity, and depth sensors, a microcontroller, and a sampler with three cartridges. Activation of water capturing cartridges was based on in situ measurements from the sensor node. The activation mechanism of the prototype device was tested with standard solutions in the laboratory and with autonomous water sampling flights over the 11-ha section of a lake. A total of seven sampling locations were selected based on a grid system. Each cartridge collected 130 mL of water samples at a 3.5 m depth. Mean water quality parameters were measured as 8.47 mg/L of dissolved oxygen, pH of 5.34, 7 µS/cm of electrical conductivity, temperature of 18 °C, and 37 Formazin Nephelometric Unit (FNU) of turbidity. The dissolved oxygen was within allowable limits that were pre-set in the self-activation computer program while the pH, electrical conductivity, and temperature were outside of allowable limits that were specified by Environmental Protection Agency (EPA). Therefore, the activation mechanism of the device was triggered and water samples were collected from all the sampling locations successfully. The adaptive water sampling with Unmanned Aerial Vehicle-assisted water sampling device was proved to be a successful method for water quality evaluation.

Unmanned Aerial Vehicle for Remote Sensing Applications—A Review

The unmanned aerial vehicle (UAV) sensors and platforms nowadays are being used in almost every application (e.g., agriculture, forestry, and mining) that needs observed information from the top or oblique views. While they intend to be a general remote sensing (RS) tool, the relevant RS data processing and analysis methods are still largely ad-hoc to applications. Although the obvious advantages of UAV data are their high spatial resolution and flexibility in acquisition and sensor integration, there is in general a lack of systematic analysis on how these characteristics alter solutions for typical RS tasks such as land-cover classification, change detection, and thematic mapping. For instance, the ultra-high-resolution data (less than 10 cm of Ground Sampling Distance (GSD)) bring more unwanted classes of objects (e.g., pedestrian and cars) in land-cover classification; the often available 3D data generated from photogrammetric images call for more advanced techniques for geometric and spectral analysis. In this paper, we perform a critical review on RS tasks that involve UAV data and their derived products as their main sources including raw perspective images, digital surface models, and orthophotos. In particular, we focus on solutions that address the “new” aspects of the UAV data including (1) ultra-high resolution; (2) availability of coherent geometric and spectral data; and (3) capability of simultaneously using multi-sensor data for fusion. Based on these solutions, we provide a brief summary of existing examples of UAV-based RS in agricultural, environmental, urban, and hazards assessment applications, etc., and by discussing their practical potentials, we share our views in their future research directions and draw conclusive remarks.